Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002402.1

Orthogroup ID

OG0011314

Physical Location & Seq

Genomic Coordinates Forward (+)

32885 .. 34505

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002402.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggagaaggaagagaacaactactcggctgctttcctgccaactaattttaacggtctggattacaccttagaccaccatcatgatgaagatcagcagcagcagcagatgaactcatcccatgtcgacctgacttcttcgagtcacgaaaacaacaatggaatgatcaattacttgatgaatgatcatcaccatgatcagcttcaacttcaacatcaacagccacaacagacgcaacatcctcctccggcagggtttagtggtgcttcaactacttcttttgataagctgagcttcgcggacgtgatgcagtttgccgattttggacccaaactagccttaaaccaaaccaagatctcagaagaagaatccgggattgacccggtttacttcctcaagtttccggttttgaacgacaagttggacgacgatgacgatcagtctctgatggttccgcggcaggatggaccggacagtcatcaggaagagagatttacaaagtccggggaagaagaggaaactcgaggggtttcgggtagtactaattcggtgcagctccggtttcttggagatgatgttccaaaccctagaggaggactaccggagctgccaaagaacaagaggaaaagaccaagaagtactaagacgagtcaggaagttgagagccagaggatgactcacatcgccgttgagaggaaccgaaggaagcaaatgaatgagcatcttcgagtgctcaggtccctcatgcccggttcatatgtacaaaggggggatcaagcttctattattggaggagccatagactttgttagagaattggagcagctcctgcagtgcttggaatcacagaagcggagaaggctcttaggtgaagcgcctcctccgagacaagtgggagctgaccctactgcggctgctaatatggcggtgctaccttcacagccagatcatcaaggcggtggtggtgtgccgttctttccggctcctaatctgcctcttaatccaaatgatccaatcaagtttgtggactttgaaacggggctccgcgaagaaactgccgagatcaagtcgtgcttcgcagatgttgaagtgaaggttttagggggtgatgccatgatcaagattctttctcagagaagaccgggccagctcattaaggccattgctgcccttgaagatttgcagcttaaaattcttcacactaacatcaccaccatcgaacaaactgttctatattgctttaaggttgcaagtgattcgaggttcacggctgaagatatagcaagttcggttcagcagatattcagctttatccatgcaaacaccgccagcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010377 GO:0010440 GO:0010444 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010639 GO:0019219 GO:0019222 GO:0030154 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051302 GO:0051782 GO:0060255 GO:0061085 GO:0061086 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0140110 GO:1902275 GO:1902680 GO:1903506 GO:1903508 GO:1905268 GO:2000112 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

445

Amino Acids

49.77

Weight (kDa)

5.29

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24140 AT3G24140
fragaria_vesca	FvH4_1g23290 FvH4_4g15850 FvH4_4g15850
malus_domestica	MD04G1006400.v1.1
prunus_persica	Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1 Prupe.1G006600_v2.0.a1
pyrus_communis	pycom04g00580
rosa_chinensis	RchiOBHm_Chr4g0415421
rosa_laevigata	RLG00000008071
rosa_multiflora	Rmu_sc0002402.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359180
rosa_rugosa	Rorug04G0134300
rosa_samantha	Rh4AG194600 Rh4BG193300 Rh4CG205600 Rh4DG192300
rosa_wichuraiana	Rw4G016570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	3 cut(s)	299, 457, 1047
AciI	CCGC	9 cut(s)	299, 455, 457, 853, 911, 926, 957, 1045, 1326
AclWI	GGATC	2 cut(s)	780, 1004
AcsI	RAATTY	1 cut(s)	1191
AcuI	CTGAAG	1 cut(s)	1293
AfaI	GTAC	3 cut(s)	541, 640, 762
AfiI	CCNNNNNNNGG	4 cut(s)	251, 593, 693, 910
AgsI	TTSAA	7 cut(s)	206, 212, 270, 412, 1034, 1088, 1175
AhdI	GACNNNNNGTC	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	2 cut(s)	447, 880
AlwI	GGATC	2 cut(s)	780, 1004
AlwNI	CAGNNNCTG	2 cut(s)	445, 829
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	2 cut(s)	1144, 1158
ApoI	RAATTY	1 cut(s)	1191
AspLEI	GCGC	1 cut(s)	877
AspS9I	GGNCC	4 cut(s)	326, 467, 738, 1144
AsuC2I	CCSGG	5 cut(s)	373, 383, 505, 750, 1143
AsuHPI	GGTGA	4 cut(s)	182, 881, 1118, 1201
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	3 cut(s)	326, 467, 738
BanII	GRGCYC	1 cut(s)	1044
BbsI	GAAGAC	1 cut(s)	1144
Bbv12I	GWGCWC	1 cut(s)	735
BccI	CCATC	4 cut(s)	87, 442, 458, 1223
BceAI	ACGGC	3 cut(s)	671, 955, 1284
BcgI	CGANNNNNNTGC	4 cut(s)	1037, 1071, 1239, 1273
BclI	TGATCA	4 cut(s)	165, 184, 196, 1116
BcnI	CCSGG	5 cut(s)	373, 383, 505, 750, 1143
BcoDI	GTCTC	2 cut(s)	447, 880
BfaI	CTAG	2 cut(s)	335, 588
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	878
BglII	AGATCT	1 cut(s)	354
BlpI	GCTNAGC	1 cut(s)	290
BmcAI	AGTACT	2 cut(s)	541, 640
Bme1390I	CCNGG	5 cut(s)	373, 383, 505, 750, 1143
Bme18I	GGWCC	3 cut(s)	326, 467, 738
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	522
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	4 cut(s)	326, 467, 738, 1144
BmiI	GGNNCC	7 cut(s)	328, 453, 698, 740, 796, 984, 1043
BmrFI	CCNGG	5 cut(s)	373, 383, 505, 750, 1143
BmsI	GCATC	3 cut(s)	297, 730, 1099
BpiI	GAAGAC	1 cut(s)	1144
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
Bpu10I	CCTNAGC	1 cut(s)	734
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	5 cut(s)	373, 383, 505, 750, 1143
BsaBI	GATNNNNATC	2 cut(s)	90, 435
BsaJI	CCNNGG	2 cut(s)	455, 504
BsaWI	WCCGGW	4 cut(s)	403, 469, 558, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 593, 693, 910
Bse3DI	GCAATG	1 cut(s)	1161
Bse8I	GATNNNNATC	2 cut(s)	90, 435
BseDI	CCNNGG	2 cut(s)	455, 504
BseGI	GGATG	4 cut(s)	116, 238, 469, 678
BseJI	GATNNNNATC	2 cut(s)	90, 435
BseLI	CCNNNNNNNGG	4 cut(s)	251, 593, 693, 910
BseMI	GCAATG	1 cut(s)	1161
BseMII	CTCAG	4 cut(s)	281, 372, 748, 1145
BseRI	GAGGAG	4 cut(s)	234, 606, 807, 870
BsgI	GTGCAG	1 cut(s)	572
Bsh1236I	CGCG	3 cut(s)	299, 457, 1047
BshFI	GGCC	2 cut(s)	1146, 1160
BsiHKAI	GWGCWC	1 cut(s)	735
BsiHKCI	CYCGRG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	4 cut(s)	251, 593, 693, 910
BsmAI	GTCTC	2 cut(s)	447, 880
BsmFI	GGGAC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	1146, 1160
BsoBI	CYCGRG	1 cut(s)	522
Bsp1286I	GDGCHC	2 cut(s)	735, 1044
Bsp1407I	TGTACA	1 cut(s)	760
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	9 cut(s)	299, 455, 457, 853, 911, 926, 957, 1045, 1326
BspANI	GGCC	2 cut(s)	1146, 1160
BspCNI	CTCAG	4 cut(s)	282, 371, 747, 1144
BspFNI	CGCG	3 cut(s)	299, 457, 1047
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	7 cut(s)	328, 453, 698, 740, 796, 984, 1043
BspMAI	CTGCAG	1 cut(s)	834
BspPI	GGATC	2 cut(s)	780, 1004
BsrDI	GCAATG	1 cut(s)	1161
BsrGI	TGTACA	1 cut(s)	760
BssECI	CCNNGG	2 cut(s)	455, 504
Bst4CI	ACNGT	3 cut(s)	56, 476, 1228
Bst6I	CTCTTC	3 cut(s)	6, 480, 507
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstAUI	TGTACA	1 cut(s)	760
BstC8I	GCNNGC	2 cut(s)	1148, 1330
BstDEI	CTNAG	7 cut(s)	70, 290, 358, 642, 734, 865, 1131
BstDSI	CCRYGG	1 cut(s)	455
BstENI	CCTNNNNNAGG	2 cut(s)	249, 591
BstF5I	GGATG	4 cut(s)	116, 238, 469, 678
BstFNI	CGCG	3 cut(s)	299, 457, 1047
BstH2I	RGCGCY	1 cut(s)	878
BstHHI	GCGC	1 cut(s)	877
BstMAI	GTCTC	2 cut(s)	447, 880
BstMWI	GCNNNNNNNGC	6 cut(s)	103, 829, 859, 923, 1166, 1325
BstNSI	RCATGY	1 cut(s)	1336
BstSCI	CCNGG	5 cut(s)	371, 381, 503, 748, 1141
BstSFI	CTRYAG	1 cut(s)	830
BstUI	CGCG	3 cut(s)	299, 457, 1047
BstV2I	GAAGAC	1 cut(s)	1144
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	1146, 1160
BtgI	CCRYGG	1 cut(s)	455
BtgZI	GCGATG	1 cut(s)	667
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	116, 238, 469, 678
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	1 cut(s)	839
Cac8I	GCNNGC	2 cut(s)	1148, 1330
CaiI	CAGNNNCTG	2 cut(s)	445, 829
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	877
Cfr13I	GGNCC	4 cut(s)	326, 467, 738, 1144
Cfr42I	CCGCGG	1 cut(s)	458
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	540, 639, 761
CviAII	CATG	7 cut(s)	83, 122, 194, 745, 1114, 1316, 1333
CviQI	GTAC	3 cut(s)	540, 639, 761
DdeI	CTNAG	7 cut(s)	70, 290, 358, 642, 734, 865, 1131
DrdI	GACNNNNNNGTC	1 cut(s)	474
DriI	GACNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	6, 480, 507
Eam1105I	GACNNNNNGTC	1 cut(s)	439
EarI	CTCTTC	3 cut(s)	6, 480, 507
Eco24I	GRGCYC	1 cut(s)	1044
Eco47I	GGWCC	3 cut(s)	326, 467, 738
Eco57I	CTGAAG	1 cut(s)	1293
Eco88I	CYCGRG	1 cut(s)	522
EcoNI	CCTNNNNNAGG	2 cut(s)	249, 591
EcoO109I	RGGNCCY	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	1044
FaeI	CATG	7 cut(s)	86, 125, 197, 748, 1117, 1319, 1336
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 1058, 1090
FaqI	GGGAC	1 cut(s)	724
FatI	CATG	7 cut(s)	82, 121, 193, 744, 1113, 1315, 1332
FauNDI	CATATG	1 cut(s)	757
FbaI	TGATCA	4 cut(s)	165, 184, 196, 1116
FblI	GTMKAC	1 cut(s)	126
FokI	GGATG	4 cut(s)	103, 225, 476, 685
FriOI	GRGCYC	1 cut(s)	1044
FspBI	CTAG	2 cut(s)	335, 588
GlaI	GCGC	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	878
HaeIII	GGCC	2 cut(s)	1146, 1160
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	877
Hin1II	CATG	7 cut(s)	86, 125, 197, 748, 1117, 1319, 1336
Hin6I	GCGC	1 cut(s)	875
HinP1I	GCGC	1 cut(s)	875
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	7 cut(s)	142, 368, 649, 676, 842, 1123, 1256
HphI	GGTGA	4 cut(s)	182, 881, 1118, 1201
Hpy166II	GTNNAC	4 cut(s)	127, 388, 1027, 1266
Hpy188I	TCNGA	4 cut(s)	361, 447, 885, 1134
Hpy188III	TCNNGA	6 cut(s)	59, 83, 146, 482, 653, 1120
Hpy8I	GTNNAC	4 cut(s)	127, 388, 1027, 1266
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	696, 852, 945, 1087
HpyCH4III	ACNGT	3 cut(s)	56, 476, 1228
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	6 cut(s)	310, 553, 832, 1183, 1250, 1319
HpyF10VI	GCNNNNNNNGC	6 cut(s)	103, 829, 859, 923, 1166, 1325
HpyF3I	CTNAG	7 cut(s)	70, 290, 358, 642, 734, 865, 1131
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	7 cut(s)	86, 125, 197, 748, 1117, 1319, 1336
HspAI	GCGC	1 cut(s)	875
Ksp22I	TGATCA	4 cut(s)	165, 184, 196, 1116
KspI	CCGCGG	1 cut(s)	458
LmnI	GCTCC	8 cut(s)	561, 604, 794, 820, 831, 896, 988, 1047
LweI	GCATC	3 cut(s)	297, 730, 1099
MaeI	CTAG	2 cut(s)	335, 588
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	143
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	2 cut(s)	735, 1044
MluCI	AATT	5 cut(s)	46, 169, 544, 815, 1191
MlyI	GAGTC	3 cut(s)	151, 658, 670
MmeI	TCCRAC	1 cut(s)	402
MseI	TTAA	6 cut(s)	51, 341, 999, 1155, 1188, 1242
MslI	CAYNNNNRTG	3 cut(s)	81, 84, 192
MspA1I	CMGCKG	1 cut(s)	457
MspR9I	CCNGG	5 cut(s)	373, 383, 505, 750, 1143
MvnI	CGCG	3 cut(s)	299, 457, 1047
MwoI	GCNNNNNNNGC	6 cut(s)	103, 829, 859, 923, 1166, 1325
NciI	CCSGG	5 cut(s)	373, 383, 505, 750, 1143
NdeI	CATATG	1 cut(s)	757
NlaIII	CATG	7 cut(s)	86, 125, 197, 748, 1117, 1319, 1336
NlaIV	GGNNCC	7 cut(s)	328, 453, 698, 740, 796, 984, 1043
NmeAIII	GCCGAG	2 cut(s)	5, 1084
NmuCI	GTSAC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	1336
PaeR7I	CTCGAG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PfeI	GAWTC	4 cut(s)	368, 842, 1123, 1256
PfoI	TCCNGGA	1 cut(s)	371
PleI	GAGTC	3 cut(s)	150, 657, 670
PpsI	GAGTC	3 cut(s)	150, 657, 670
PpuMI	RGGWCCY	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	738
PspN4I	GGNNCC	7 cut(s)	328, 453, 698, 740, 796, 984, 1043
PspPI	GGNCC	4 cut(s)	326, 467, 738, 1144
PspPPI	RGGWCCY	1 cut(s)	738
PspXI	VCTCGAGB	1 cut(s)	522
PstI	CTGCAG	1 cut(s)	834
PstNI	CAGNNNCTG	2 cut(s)	445, 829
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	3 cut(s)	541, 640, 762
RsaNI	GTAC	3 cut(s)	540, 639, 761
RseI	CAYNNNNRTG	3 cut(s)	81, 84, 192
SacII	CCGCGG	1 cut(s)	458
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	6 cut(s)	51, 341, 999, 1155, 1188, 1242
Sau96I	GGNCC	4 cut(s)	326, 467, 738, 1144
ScaI	AGTACT	2 cut(s)	541, 640
SchI	GAGTC	3 cut(s)	151, 658, 670
ScrFI	CCNGG	5 cut(s)	373, 383, 505, 750, 1143
SduI	GDGCHC	2 cut(s)	735, 1044
SfaNI	GCATC	3 cut(s)	297, 730, 1099
SfcI	CTRYAG	1 cut(s)	830
Sfr274I	CTCGAG	1 cut(s)	522
Sfr303I	CCGCGG	1 cut(s)	458
SgrBI	CCGCGG	1 cut(s)	458
SinI	GGWCC	3 cut(s)	326, 467, 738
SlaI	CTCGAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	3 cut(s)	81, 84, 192
SmlI	CTYRAG	2 cut(s)	395, 522
SmoI	CTYRAG	2 cut(s)	395, 522
Sse9I	AATT	5 cut(s)	46, 169, 544, 815, 1191
SsiI	CCGC	9 cut(s)	299, 455, 457, 853, 911, 926, 957, 1045, 1326
SspMI	CTAG	2 cut(s)	335, 588
StyD4I	CCNGG	5 cut(s)	371, 381, 503, 748, 1141
TaaI	ACNGT	3 cut(s)	56, 476, 1228
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	6 cut(s)	126, 140, 523, 727, 1218, 1259
TasI	AATT	5 cut(s)	46, 169, 544, 815, 1191
TatI	WGTACW	3 cut(s)	539, 638, 760
TauI	GCSGC	2 cut(s)	460, 914
TfiI	GAWTC	4 cut(s)	368, 842, 1123, 1256
Tru1I	TTAA	6 cut(s)	51, 341, 999, 1155, 1188, 1242
Tru9I	TTAA	6 cut(s)	51, 341, 999, 1155, 1188, 1242
TscAI	CASTG	1 cut(s)	839
TseFI	GTSAC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	102, 125, 194, 728, 744
TspRI	CASTG	1 cut(s)	839
VpaK11BI	GGWCC	3 cut(s)	326, 467, 738
XagI	CCTNNNNNAGG	2 cut(s)	249, 591
XapI	RAATTY	1 cut(s)	1191
XceI	RCATGY	1 cut(s)	1336
XhoI	CTCGAG	1 cut(s)	522
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	335, 588
ZrmI	AGTACT	2 cut(s)	541, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.