AT3G24820

BSD domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013523
Physical Location & Seq
Reverse (-)
9062354 .. 9064476
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24820.1

Sequence Viewer

Length: 561 bp
ATGAATATAGCTTCGAGGATTCGACGAAGTTTTTTAAGAGAGAAGAAGGAATCTTCAGATGGGAATAGCTTGAAGAATGGATCGAGTGTTAAGGAAGAAGGTAAAGATGAGATTTTGGGAGTTACTGATGAGTTAATCGATCATGTCAGATCCTTCACCATTGATACGTTTAAGAACTTCTCTCTGGAAGATGAAGAAGAAGAAGTATCTGTGAATCCTTTGGGAGATGAAGATAATGGAATGAGTTCATCTGCAAATGTGAAGAAGGATTTGTCTGATTGGCAGGAGAAACACGCGGTTCTCGTGTTATCGAAATCGAAGGAACTCTCACAGTTGAGATTCAAGTTATGCCCGCGAGTTTTAAAGGAACATCAGTTTTGGAGGATATATTTCCAGCTTGTGAGGAAGATTGTGGCAAAATATGAGGTGCTAGCAATCCAACAGGCTCAAATCAGGAGGATGGCCATGGAAGACAGTAAAACTTCTGAAAGCAAGGGTGTATATGAAGTTGAAATGTCAGAAACAAAGCAAAGGTTGAGTACAGGACCTGCAACTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

186

Amino Acids

21.32

Weight (kDa)

6.02

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 89 - 141 1.1e-13 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccII CGCG 2 cut(s) 296, 355
AciI CCGC 2 cut(s) 296, 353
AclWI GGATC 2 cut(s) 88, 144
AcoI YGGCCR 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 541
AgsI TTSAA 3 cut(s) 73, 343, 512
AluBI AGCT 3 cut(s) 11, 69, 397
AluI AGCT 3 cut(s) 11, 69, 397
AlwI GGATC 2 cut(s) 88, 144
AlwNI CAGNNNCTG 1 cut(s) 548
AoxI GGCC 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 148
AsuNHI GCTAGC 1 cut(s) 430
AvaII GGWCC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 464
BauI CACGAG 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 477
BccI CCATC 2 cut(s) 53, 454
BfaI CTAG 1 cut(s) 431
BfuAI ACCTGC 1 cut(s) 556
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmtI GCTAGC 1 cut(s) 434
BpiI GAAGAC 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 1 cut(s) 465
Bsh1236I CGCG 2 cut(s) 296, 355
BshFI GGCC 1 cut(s) 464
BshVI ATCGAT 1 cut(s) 138
BsnI GGCC 1 cut(s) 464
Bsp143I GATC 3 cut(s) 80, 139, 149
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 2 cut(s) 296, 353
BspANI GGCC 1 cut(s) 464
BspDI ATCGAT 1 cut(s) 138
BspFNI CGCG 2 cut(s) 296, 355
BspMI ACCTGC 1 cut(s) 556
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 2 cut(s) 88, 144
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 3 cut(s) 80, 139, 149
BssSI CACGAG 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 333, 476
BstC8I GCNNGC 2 cut(s) 353, 432
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 1 cut(s) 465
BstFNI CGCG 2 cut(s) 296, 355
BstKTI GATC 3 cut(s) 83, 142, 152
BstMBI GATC 3 cut(s) 80, 139, 149
BstUI CGCG 2 cut(s) 296, 355
BstV2I GAAGAC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 1 cut(s) 464
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 465
BtsCI GGATG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 2 cut(s) 353, 432
CaiI CAGNNNCTG 1 cut(s) 548
Cfr13I GGNCC 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 1 cut(s) 540
CviAII CATG 2 cut(s) 143, 466
CviJI RGCY 5 cut(s) 11, 69, 397, 446, 464
CviKI_1 RGCY 5 cut(s) 11, 69, 397, 446, 464
CviQI GTAC 1 cut(s) 540
DpnI GATC 3 cut(s) 82, 141, 151
DpnII GATC 3 cut(s) 80, 139, 149
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 146, 469
FaiI YATR 8 cut(s) 8, 144, 349, 388, 423, 467, 502, 504
FatI CATG 2 cut(s) 142, 465
FauI CCCGC 1 cut(s) 360
FokI GGATG 1 cut(s) 472
FspBI CTAG 1 cut(s) 431
HaeIII GGCC 1 cut(s) 464
Hin1II CATG 2 cut(s) 146, 469
HinfI GANTC 4 cut(s) 19, 50, 214, 339
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 5 cut(s) 58, 149, 277, 487, 520
Hpy188III TCNNGA 2 cut(s) 185, 454
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 5 cut(s) 40, 92, 163, 259, 313
HpyCH4III ACNGT 2 cut(s) 333, 476
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 254, 551
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 2 cut(s) 146, 469
Kzo9I GATC 3 cut(s) 80, 139, 149
LpnPI CCDG 6 cut(s) 170, 269, 407, 428, 439, 528
MaeI CTAG 1 cut(s) 431
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 121
MalI GATC 3 cut(s) 82, 141, 151
MboI GATC 3 cut(s) 80, 139, 149
MflI RGATCY 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 464
MluNI TGGCCA 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 5 cut(s) 9, 375, 396, 418, 450
Mox20I TGGCCA 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 464
MseI TTAA 5 cut(s) 35, 90, 134, 171, 362
Msp20I TGGCCA 1 cut(s) 464
MvnI CGCG 2 cut(s) 296, 355
NcoI CCATGG 1 cut(s) 465
NdeII GATC 3 cut(s) 80, 139, 149
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 2 cut(s) 146, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 244
PfeI GAWTC 4 cut(s) 19, 50, 214, 339
PpuMI RGGWCCY 1 cut(s) 545
Psp5II RGGWCCY 1 cut(s) 545
PspPI GGNCC 1 cut(s) 545
PspPPI RGGWCCY 1 cut(s) 545
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
SaqAI TTAA 5 cut(s) 35, 90, 134, 171, 362
Sau3AI GATC 3 cut(s) 80, 139, 149
Sau96I GGNCC 1 cut(s) 545
SetI ASST 8 cut(s) 13, 71, 103, 170, 399, 429, 536, 550
SinI GGWCC 1 cut(s) 545
SsiI CCGC 2 cut(s) 296, 353
SspMI CTAG 1 cut(s) 431
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 333, 476
TaiI ACGT 1 cut(s) 170
TaqI TCGA 6 cut(s) 14, 22, 83, 138, 311, 317
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 4 cut(s) 19, 50, 214, 339
Tru1I TTAA 5 cut(s) 35, 90, 134, 171, 362
Tru9I TTAA 5 cut(s) 35, 90, 134, 171, 362
TspDTI ATGAA 5 cut(s) 17, 207, 237, 243, 519
TspGWI ACGGA 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 244
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.