FvH4_2g19070

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013523
Physical Location & Seq
Forward (+)
16259709 .. 16266950
7242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19070.t1

Sequence Viewer

Length: 531 bp
ATGGACTTATCTTCGTGGTTCCGGCGCACCCATTTACGGAACACTGAAAAGACCCAGAACCCAGATCCCCCAAAGCAAAATGAACCTGAACAAGAGCTTTTTGGAGTCACTGAGCAGCTGATCAATCTTGTCAAGTCCTTCACTTTAGAAACTTTCAAGAGCTTCCCTCTCCCAGATGATGAAGGAGCTACTTGTGGTGACAACTCTCTGACAACTTCAAGCAACATTCAGAAAGATCTCTCGGAATGGCAGGAAAGGCATGCCATGCTTGTGCTCTCGAAAGTGAAGGAACTTTCCCACCTAAGATATAAGCTATGCCCAGGCCACTTGAAGGAACATCAATTTTGGAGAGTATATTTTATGCTTGTCAAGAAACAGGTGGCTGAATACGAGCTACACGCCATACAACTAGCAAAGCTTAAGGAAGTGAAAATGGAAAATGAAAGGTGTACTAGTGCTGATGCATGTGAAGTTGAAATGGCAGAAGCAAAGCACATTGGAGTAGCAAGCTTAGCACCTACAACTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

177

Amino Acids

20.26

Weight (kDa)

5.99

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 79 - 125 2.2e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 59
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 36, 331
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 4 cut(s) 157, 219, 331, 476
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 8 cut(s) 97, 118, 162, 188, 313, 394, 418, 510
AluI AGCT 8 cut(s) 97, 118, 162, 188, 313, 394, 418, 510
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 2 cut(s) 410, 453
BfrI CTTAAG 1 cut(s) 419
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 151, 183
Bpu1102I GCTNAGC 1 cut(s) 511
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 331
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 36, 331
BseMII CTCAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 36, 331
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 64, 120, 235
Bsp1720I GCTNAGC 1 cut(s) 511
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 64, 120, 235
Bst2UI CCWGG 1 cut(s) 321
BstAFI CTTAAG 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 261, 508
BstDEI CTNAG 3 cut(s) 111, 302, 511
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 3 cut(s) 67, 123, 238
BstMBI GATC 3 cut(s) 64, 120, 235
BstMWI GCNNNNNNNGC 3 cut(s) 256, 265, 512
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 2 cut(s) 263, 468
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 64, 235
BstYI RGATCY 2 cut(s) 64, 235
BsuRI GGCC 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 42, 108
Cac8I GCNNGC 2 cut(s) 261, 508
CfoI GCGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 450
CviAII CATG 3 cut(s) 260, 265, 465
CviQI GTAC 1 cut(s) 450
DdeI CTNAG 3 cut(s) 111, 302, 511
DpnI GATC 3 cut(s) 66, 122, 237
DpnII GATC 3 cut(s) 64, 120, 235
EcoRII CCWGG 1 cut(s) 319
EcoT22I ATGCAT 1 cut(s) 466
FaeI CATG 3 cut(s) 263, 268, 468
FaiI YATR 9 cut(s) 261, 266, 309, 316, 355, 362, 404, 466, 529
FatI CATG 3 cut(s) 259, 264, 464
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 2 cut(s) 410, 453
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 263, 268, 468
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 2 cut(s) 416, 508
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 3 cut(s) 210, 231, 244
Hpy188III TCNNGA 3 cut(s) 157, 277, 370
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 4 cut(s) 148, 176, 280, 325
HpyCH4V TGCA 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 265, 512
HpyF3I CTNAG 3 cut(s) 111, 302, 511
Hsp92II CATG 3 cut(s) 263, 268, 468
HspAI GCGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 3 cut(s) 64, 120, 235
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 9 cut(s) 35, 68, 75, 99, 186, 236, 306, 333, 362
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 410, 453
MaeIII GTNAC 2 cut(s) 106, 197
MalI GATC 3 cut(s) 66, 122, 237
MboI GATC 3 cut(s) 64, 120, 235
MboII GAAGA 1 cut(s) 3
MflI RGATCY 2 cut(s) 64, 235
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 466
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 118
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 256, 265, 512
NdeII GATC 3 cut(s) 64, 120, 235
NlaIII CATG 3 cut(s) 263, 268, 468
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 106, 197
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 2 cut(s) 263, 468
PaeI GCATGC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 64, 235
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 3 cut(s) 64, 120, 235
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 452
SphI GCATGC 1 cut(s) 263
Sse9I AATT 1 cut(s) 341
SspMI CTAG 2 cut(s) 410, 453
StyD4I CCNGG 1 cut(s) 319
TaqI TCGA 1 cut(s) 278
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 449
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 2 cut(s) 49, 115
TseFI GTSAC 2 cut(s) 106, 197
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 2 cut(s) 106, 197
TspDTI ATGAA 3 cut(s) 96, 195, 456
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 2 cut(s) 49, 115
Vha464I CTTAAG 1 cut(s) 419
XceI RCATGY 2 cut(s) 263, 468
XspI CTAG 2 cut(s) 410, 453
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.