Prupe.8G203200_v2.0.a1

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013523
Physical Location & Seq
Forward (+)
19114472 .. 19117029
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G203200.3

Sequence Viewer

Length: 528 bp
ATGGATTTGTCTTCGTGGTTCCGACGCAGCCTCTTAAGGAAGAGTGAAAAAACCAAAAACCCAGATCCCTCTGAGCAAACTCTCCTGCCCCGAAGTGAAGAAGAAGAGCAACTGGGAGTCACAGAGGAACTGATCGACCATGTCAAGTCTTTCACTTTAGACACTTTCAAGAATTTCCCTCTCCCAGATGATGAGGGAGCTGAAAATTCTCCGACAACTTCGAGCAACACTCAAAAAGATCTATCTGAATGGCAGGAAAAACATGCCACTCTTGTGCTCTCAAAAGTGAAGGAACTTTCCCATCTGAGATATAAACTATGCCCGGGATACTTGAAGGAGCATCAATTTTGGAGAATATACTTTCTGCTTGTAAAGAAACAAGTGGCTGAATACGAGCTGCGTGCCATACAACTAGCAAGGCTGAAAGAAATGGCAGTGGAGAATGAGAAGTCTACAAATTCCATTGTACATGAAGTTGAAATGTCAGAGGCAAAGCAGGGAGCAAGCTTAGCCCTTCCAACTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

176

Amino Acids

20.23

Weight (kDa)

5.62

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 452
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 3 cut(s) 172, 205, 457
AfaI GTAC 1 cut(s) 468
AflII CTTAAG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 169, 334, 479
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 3 cut(s) 200, 397, 507
AluI AGCT 3 cut(s) 200, 397, 507
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 27, 397
ApoI RAATTY 3 cut(s) 172, 205, 457
AsuC2I CCSGG 2 cut(s) 323, 324
AvaI CYCGRG 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 3
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 39, 384
BccI CCATC 1 cut(s) 309
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciVI GTATCC 1 cut(s) 320
BcnI CCSGG 2 cut(s) 323, 324
BfaI CTAG 1 cut(s) 413
BfrI CTTAAG 1 cut(s) 34
BfuI GTATCC 1 cut(s) 320
BglII AGATCT 1 cut(s) 238
BisI GCNGC 2 cut(s) 28, 398
BlpI GCTNAGC 1 cut(s) 508
BlsI GCNGC 2 cut(s) 29, 399
Bme1390I CCNGG 2 cut(s) 323, 324
BmeT110I CYCGRG 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 2 cut(s) 323, 324
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 3
BplI GAGNNNNNCTC 2 cut(s) 214, 246
Bpu1102I GCTNAGC 1 cut(s) 508
BpuMI CCSGG 2 cut(s) 323, 324
BsaJI CCNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 63, 296
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 39, 384
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 3 cut(s) 64, 132, 238
Bsp1720I GCTNAGC 1 cut(s) 508
BspCNI CTCAG 2 cut(s) 64, 297
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 99
BspTI CTTAAG 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 466
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 3 cut(s) 64, 132, 238
Bst6I CTCTTC 2 cut(s) 35, 99
BstAFI CTTAAG 1 cut(s) 34
BstAUI TGTACA 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 402, 505
BstDEI CTNAG 3 cut(s) 72, 305, 508
BstKTI GATC 3 cut(s) 67, 135, 241
BstMBI GATC 3 cut(s) 64, 132, 238
BstMWI GCNNNNNNNGC 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 321, 322
BstV1I GCAGC 2 cut(s) 39, 384
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 2 cut(s) 64, 238
BstYI RGATCY 2 cut(s) 64, 238
BsuI GTATCC 1 cut(s) 320
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 402, 505
Cfr9I CCCGGG 1 cut(s) 322
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 467
CviAII CATG 3 cut(s) 140, 263, 470
CviJI RGCY 7 cut(s) 30, 200, 386, 397, 421, 507, 512
CviKI_1 RGCY 7 cut(s) 30, 200, 386, 397, 421, 507, 512
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 3 cut(s) 72, 305, 508
DpnI GATC 3 cut(s) 66, 134, 240
DpnII GATC 3 cut(s) 64, 132, 238
Eam1104I CTCTTC 2 cut(s) 35, 99
EarI CTCTTC 2 cut(s) 35, 99
Eco88I CYCGRG 1 cut(s) 322
FaeI CATG 3 cut(s) 143, 266, 473
FaiI YATR 8 cut(s) 141, 264, 312, 319, 358, 407, 471, 526
FatI CATG 3 cut(s) 139, 262, 469
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 28, 398
Fsp4HI GCNGC 2 cut(s) 28, 398
FspBI CTAG 1 cut(s) 413
GluI GCNGC 2 cut(s) 28, 398
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 143, 266, 473
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 1 cut(s) 117
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 6 cut(s) 23, 73, 213, 247, 306, 487
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 453
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 283, 328, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 509
HpyF3I CTNAG 3 cut(s) 72, 305, 508
Hsp92II CATG 3 cut(s) 143, 266, 473
Kzo9I GATC 3 cut(s) 64, 132, 238
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 197, 337, 500
LpnPI CCDG 7 cut(s) 75, 98, 98, 198, 239, 336, 482
Lsp1109I GCAGC 2 cut(s) 39, 384
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 118
MalI GATC 3 cut(s) 66, 134, 240
MboI GATC 3 cut(s) 64, 132, 238
MboII GAAGA 5 cut(s) 3, 52, 110, 113, 116
MflI RGATCY 2 cut(s) 64, 238
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 4 cut(s) 172, 205, 344, 457
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 2 cut(s) 46, 236
MnlI CCTC 6 cut(s) 41, 79, 118, 187, 189, 481
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 2 cut(s) 323, 324
MwoI GCNNNNNNNGC 1 cut(s) 509
NciI CCSGG 2 cut(s) 323, 324
NdeII GATC 3 cut(s) 64, 132, 238
NlaIII CATG 3 cut(s) 143, 266, 473
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 99
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 29, 399
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 64, 238
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 2 cut(s) 28, 398
Sau3AI GATC 3 cut(s) 64, 132, 238
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 2 cut(s) 323, 324
SduI GDGCHC 1 cut(s) 279
SetI ASST 3 cut(s) 202, 399, 509
SfaNI GCATC 1 cut(s) 349
SmaI CCCGGG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 4 cut(s) 172, 205, 344, 457
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 321, 322
TaqI TCGA 2 cut(s) 135, 221
TasI AATT 4 cut(s) 172, 205, 344, 457
TatI WGTACW 1 cut(s) 466
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 27, 397
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 486
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 1 cut(s) 441
Tth111I GACNNNGTC 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 34
XapI RAATTY 3 cut(s) 172, 205, 457
XceI RCATGY 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 452
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.