Rorug06G0168200

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013523
Physical Location & Seq
Forward (+)
24738863 .. 24742922
4060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0168200.1

Sequence Viewer

Length: 654 bp
ATGACCAAGCTCTCCACGATCTCTTCTCTCGTCTCCGATGTCCTCATCGTCCTCCTCTGCTCTCTCGTCATTCTCGGCCTTCTCTTCCGCCAAATGAACATCTCTCCGGGCTCTCTTATTTCTAATGGTAGAAAAGGCTCAGCTGACGGAAATTTCAATAATGAAAAGGTAGAGTTGTATTCAAATGCTCTAAACTCTGCCCTCAATGAGGAAATGTCCGCCGATCCGAAAGCGTTTTTGATGGGTGAAGAGGTTGGGAGTATCAATGTGCTTACAAGCTACAAACTTGACAAGCTGGCCTTTTTAGTCACATTTTGTTCCCTTCATGTGGCTTTGAGGATGAGATTCTTTGAACAAAAACCTCTGGATCAAAAGATTGTTATGAGGTGTGGGATTATGAATGGGATCTCCATAGGACTTTTAGACCTGAGCCTGGGGTTTAATTCTATTGGCTTTTATCAGAACCTGGGCCTCATTCGTCTTCTTGATTACATTGTTAATGACATTCCAAAACATGCCCAAAAAGCGTTGTTTCCCGGTATATGGTTGACGGAGGTCTCAGTTGATTCGTACAAGGTTCCTGAATTCCCTGAAAATGTCAAGGTATTTTTGCTTTCTTCTGAGTTCTCTCTGAAAGTTTCATGCTTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

217

Amino Acids

24.06

Weight (kDa)

6.3

Isoelectric Point (pI)

22.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 88, 219
AclWI GGATC 3 cut(s) 218, 375, 413
AcsI RAATTY 2 cut(s) 151, 584
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 4 cut(s) 208, 328, 433, 543
AgsI TTSAA 3 cut(s) 157, 183, 353
AjnI CCWGG 2 cut(s) 432, 465
AluBI AGCT 4 cut(s) 10, 143, 279, 295
AluI AGCT 4 cut(s) 10, 143, 279, 295
Alw26I GTCTC 2 cut(s) 37, 562
AlwI GGATC 3 cut(s) 218, 375, 413
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 3 cut(s) 76, 297, 469
ApoI RAATTY 2 cut(s) 151, 584
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 2 cut(s) 108, 537
AsuHPI GGTGA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 473
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 434, 467
BcnI CCSGG 2 cut(s) 108, 537
BcoDI GTCTC 2 cut(s) 37, 562
BlpI GCTNAGC 1 cut(s) 139
Bme1390I CCNGG 4 cut(s) 108, 434, 467, 537
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 4 cut(s) 108, 434, 467, 537
BoxI GACNNNNGTC 1 cut(s) 554
BpiI GAAGAC 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 139
BpuMI CCSGG 2 cut(s) 108, 537
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 433, 466
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 328, 433, 543
BseBI CCWGG 2 cut(s) 434, 467
BseDI CCNNGG 2 cut(s) 433, 466
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 4 cut(s) 208, 328, 433, 543
BseMII CTCAG 4 cut(s) 153, 419, 573, 612
BseRI GAGGAG 1 cut(s) 44
BshFI GGCC 3 cut(s) 78, 299, 471
BsiSI CCGG 2 cut(s) 107, 537
BslI CCNNNNNNNGG 4 cut(s) 208, 328, 433, 543
BsmAI GTCTC 2 cut(s) 37, 562
BsmBI CGTCTC 1 cut(s) 37
BsnI GGCC 3 cut(s) 78, 299, 471
Bso31I GGTCTC 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 4 cut(s) 18, 223, 367, 405
Bsp1720I GCTNAGC 1 cut(s) 139
BspACI CCGC 2 cut(s) 88, 219
BspANI GGCC 3 cut(s) 78, 299, 471
BspCNI CTCAG 4 cut(s) 152, 420, 572, 613
BspLI GGNNCC 1 cut(s) 579
BspPI GGATC 3 cut(s) 218, 375, 413
BspTNI GGTCTC 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 433, 466
BssMI GATC 4 cut(s) 18, 223, 367, 405
Bst2UI CCWGG 2 cut(s) 434, 467
Bst6I CTCTTC 3 cut(s) 28, 89, 243
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 139, 428, 559, 621
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 4 cut(s) 21, 226, 370, 408
BstMAI GTCTC 2 cut(s) 37, 562
BstMBI GATC 4 cut(s) 18, 223, 367, 405
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 2 cut(s) 434, 467
BstNSI RCATGY 1 cut(s) 518
BstPAI GACNNNNGTC 1 cut(s) 554
BstSCI CCNGG 4 cut(s) 106, 432, 465, 535
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
BsuRI GGCC 3 cut(s) 78, 299, 471
BtsCI GGATG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 571
CviAII CATG 3 cut(s) 326, 515, 642
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 4 cut(s) 139, 428, 559, 621
DpnI GATC 4 cut(s) 20, 225, 369, 407
DpnII GATC 4 cut(s) 18, 223, 367, 405
Eam1104I CTCTTC 3 cut(s) 28, 89, 243
EarI CTCTTC 3 cut(s) 28, 89, 243
EciI GGCGGA 2 cut(s) 77, 208
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 432, 465
EcoT38I GRGCYC 1 cut(s) 113
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 3 cut(s) 329, 518, 645
FaiI YATR 8 cut(s) 327, 383, 398, 413, 516, 542, 544, 643
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 3 cut(s) 325, 514, 641
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 113
HaeIII GGCC 3 cut(s) 78, 299, 471
HapII CCGG 2 cut(s) 107, 537
Hin1II CATG 3 cut(s) 329, 518, 645
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 2 cut(s) 345, 566
HpaII CCGG 2 cut(s) 107, 537
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 5 cut(s) 37, 228, 462, 622, 633
Hpy188III TCNNGA 3 cut(s) 365, 485, 581
Hpy8I GTNNAC 1 cut(s) 549
HpyAV CCTTC 2 cut(s) 89, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 4 cut(s) 139, 428, 559, 621
Hsp92II CATG 3 cut(s) 329, 518, 645
Kzo9I GATC 4 cut(s) 18, 223, 367, 405
MaeIII GTNAC 1 cut(s) 307
MalI GATC 4 cut(s) 20, 225, 369, 407
MboI GATC 4 cut(s) 18, 223, 367, 405
MboII GAAGA 5 cut(s) 15, 76, 260, 473, 609
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 151, 442, 584
MseI TTAA 2 cut(s) 441, 498
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 107, 537
MspR9I CCNGG 4 cut(s) 108, 434, 467, 537
MvaI CCWGG 2 cut(s) 434, 467
MwoI GCNNNNNNNGC 1 cut(s) 524
NciI CCSGG 2 cut(s) 108, 537
NdeII GATC 4 cut(s) 18, 223, 367, 405
NlaIII CATG 3 cut(s) 329, 518, 645
NlaIV GGNNCC 1 cut(s) 579
NmeAIII GCCGAG 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 518
PfeI GAWTC 2 cut(s) 345, 566
PshAI GACNNNNGTC 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 432, 465
PspGI CCWGG 2 cut(s) 432, 465
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 405
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
SaqAI TTAA 2 cut(s) 441, 498
Sau3AI GATC 4 cut(s) 18, 223, 367, 405
Sau96I GGNCC 1 cut(s) 469
ScrFI CCNGG 4 cut(s) 108, 434, 467, 537
SduI GDGCHC 1 cut(s) 113
Sse9I AATT 3 cut(s) 151, 442, 584
SsiI CCGC 2 cut(s) 88, 219
StyD4I CCNGG 4 cut(s) 106, 432, 465, 535
TasI AATT 3 cut(s) 151, 442, 584
TfiI GAWTC 2 cut(s) 345, 566
Tru1I TTAA 2 cut(s) 441, 498
Tru9I TTAA 2 cut(s) 441, 498
TseFI GTSAC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 6 cut(s) 110, 177, 314, 413, 630, 638
TspGWI ACGGA 2 cut(s) 162, 566
XagI CCTNNNNNAGG 1 cut(s) 206
XapI RAATTY 2 cut(s) 151, 584
XceI RCATGY 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.