Rh6CG282800

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013523
Physical Location & Seq
Forward (+)
46016310 .. 46021586
5277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG282800.1

Sequence Viewer

Length: 390 bp
ATGGACTTATCTTCGTGGTTCCGGCGCAACCTTCTGCGGAACACTGAAAAGACCCAGAACCCAGATCCCCCAAAGCCAAATGAACCTGAACAAGAGCTACTTGGAGTCACGGAGCAGTTGATCAATCATGTCAAGTCTTTCACTTTAGAAACCTTCAAGACTTTCCCTCTCCCAGATGATGAAGGAGCTACTTCTGGTGACAACTCTCTGACAACTTCAAGCAACATTCAGAAAGATCTCTCGGAATGGCAGGAAAGGCATGCCATGTTTGTGCTCTCAAAAGTGAAGGAACTTTCCCACCTAAGATATAAGCTATGCCCAGGCCACATGAAGGAACATCAATTTTGGAGAGTATACTTTATGCTTGTCAAGAAACAGGTGGCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

129

Amino Acids

15.15

Weight (kDa)

6.52

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 79 - 125 4.3e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 157, 219
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 3 cut(s) 97, 188, 313
AluI AGCT 3 cut(s) 97, 188, 313
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 1 cut(s) 59
AoxI GGCC 2 cut(s) 322, 381
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 120
BglII AGATCT 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 331
BshFI GGCC 2 cut(s) 324, 383
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 331
BsnI GGCC 2 cut(s) 324, 383
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 64, 120, 235
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 324, 383
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 64, 120, 235
BssNAI GTATAC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 3 cut(s) 67, 123, 238
BstMBI GATC 3 cut(s) 64, 120, 235
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 64, 235
BstYI RGATCY 2 cut(s) 64, 235
BstZ17I GTATAC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 324, 383
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 27
CviAII CATG 4 cut(s) 128, 260, 265, 328
CviJI RGCY 6 cut(s) 76, 97, 188, 313, 324, 383
CviKI_1 RGCY 6 cut(s) 76, 97, 188, 313, 324, 383
DdeI CTNAG 1 cut(s) 302
DpnI GATC 3 cut(s) 66, 122, 237
DpnII GATC 3 cut(s) 64, 120, 235
EaeI YGGCCR 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 4 cut(s) 131, 263, 268, 331
FaiI YATR 8 cut(s) 129, 261, 266, 309, 316, 329, 355, 362
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 4 cut(s) 127, 259, 264, 327
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 354
GlaI GCGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 324, 383
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 131, 263, 268, 331
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 3 cut(s) 210, 231, 244
Hpy188III TCNNGA 2 cut(s) 157, 370
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 5 cut(s) 41, 163, 176, 280, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 4 cut(s) 131, 263, 268, 331
HspAI GCGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 3 cut(s) 64, 120, 235
LmnI GCTCC 2 cut(s) 112, 185
MaeIII GTNAC 2 cut(s) 106, 197
MalI GATC 3 cut(s) 66, 122, 237
MboI GATC 3 cut(s) 64, 120, 235
MboII GAAGA 1 cut(s) 3
MflI RGATCY 2 cut(s) 64, 235
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 3 cut(s) 64, 120, 235
NlaIII CATG 4 cut(s) 131, 263, 268, 331
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 106, 197
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 20
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PsuI RGATCY 2 cut(s) 64, 235
RseI CAYNNNNRTG 1 cut(s) 269
Sau3AI GATC 3 cut(s) 64, 120, 235
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 276
SetI ASST 8 cut(s) 33, 88, 99, 155, 190, 303, 315, 381
SmiMI CAYNNNNRTG 1 cut(s) 269
SphI GCATGC 1 cut(s) 263
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 319
TasI AATT 1 cut(s) 341
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 106, 197
Tsp45I GTSAC 2 cut(s) 106, 197
TspDTI ATGAA 3 cut(s) 96, 195, 344
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.