MD05G1175500.v1.1

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013523
Physical Location & Seq
Forward (+)
30325375 .. 30327585
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1175500.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGATTTATCTTCGTGGTTCCGACGCAAACTCTTGAAGAATAGTGAAAAGACCAGTAACCCAGATCCCTCAGAGCAAACCCTCCTTCCCCAGCAAAACGAAAGGGAAGAAGAGCAGCTGGGAGTCACGGAGCAGTTGGTCGATCTTGTCAAGTCCTTCACTTTGGACACTTTCAGGAATTTCCCACTTCCAGACGATGAGGGAGCTGAAGAAGATGAAGATCTGTCTGAATGGCAGGAAAGGCATGCCACCATTGTGCTCTCAAGAGTGAAGGAACTTTCACATTTGAGATATAAGCTATGCCCCCGCTACTTGAAGGAACGTCAATTTTGGAGAGTGTACTTTGTGCTTGTCAAGAAACAAGTGGCGGAATACGAGCTGCGTGCCATACAACAAGCGAGGATCAAAGAAATGGCAGTGGAGAATGAAAAGTCTACAAATACCAGTGCATGTGAAGTCGAAATGTCAGAAGCAAAGCAGGGAGCAAAATTAGCGCCTCCAACGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

170

Amino Acids

19.8

Weight (kDa)

5.17

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 72 - 120 4.5e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 434
AciI CCGC 2 cut(s) 307, 368
AclWI GGATC 2 cut(s) 59, 410
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 2 cut(s) 37, 316
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 4 cut(s) 118, 206, 298, 379
AluI AGCT 4 cut(s) 118, 206, 298, 379
Alw21I GWGCWC 1 cut(s) 261
AlwI GGATC 2 cut(s) 59, 410
ApeKI GCWGC 2 cut(s) 115, 379
ApoI RAATTY 1 cut(s) 178
AspLEI GCGC 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 127, 366
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BfoI RGCGCY 1 cut(s) 497
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 116, 380
BlsI GCNGC 2 cut(s) 117, 381
BmiI GGNNCC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 219
Bse1I ACTGG 2 cut(s) 54, 444
Bse8I GATNNNNATC 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 54, 444
BseXI GCAGC 2 cut(s) 127, 366
BseYI CCCAGC 2 cut(s) 90, 118
BsiHKAI GWGCWC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 4 cut(s) 64, 142, 220, 402
BspACI CCGC 2 cut(s) 307, 368
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 59, 410
BspQI GCTCTTC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 54, 444
BssMI GATC 4 cut(s) 64, 142, 220, 402
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 246, 384
BstDEI CTNAG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 4 cut(s) 67, 145, 223, 405
BstMBI GATC 4 cut(s) 64, 142, 220, 402
BstMWI GCNNNNNNNGC 3 cut(s) 241, 491, 502
BstNSI RCATGY 2 cut(s) 248, 453
BstV1I GCAGC 2 cut(s) 127, 366
BstX2I RGATCY 2 cut(s) 64, 220
BstYI RGATCY 2 cut(s) 64, 220
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 423, 451
Cac8I GCNNGC 2 cut(s) 246, 384
CfoI GCGC 1 cut(s) 496
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 245, 450
CviJI RGCY 4 cut(s) 118, 206, 298, 379
CviKI_1 RGCY 4 cut(s) 118, 206, 298, 379
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 70
DpnI GATC 4 cut(s) 66, 144, 222, 404
DpnII GATC 4 cut(s) 64, 142, 220, 402
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 383
Eco57I CTGAAG 1 cut(s) 228
FaeI CATG 2 cut(s) 248, 453
FaiI YATR 6 cut(s) 246, 294, 301, 389, 451, 508
FatI CATG 2 cut(s) 244, 449
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 116, 380
Fsp4HI GCNGC 2 cut(s) 116, 380
GlaI GCGC 1 cut(s) 495
GluI GCNGC 2 cut(s) 116, 380
GsaI CCCAGC 2 cut(s) 94, 122
HaeII RGCGCY 1 cut(s) 497
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 496
Hin1II CATG 2 cut(s) 248, 453
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 340, 435
Hpy188I TCNGA 4 cut(s) 23, 73, 229, 469
Hpy188III TCNNGA 5 cut(s) 34, 175, 191, 264, 355
Hpy8I GTNNAC 2 cut(s) 340, 435
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 95, 166, 265, 310
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 491, 502
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 2 cut(s) 248, 453
HspAI GCGC 1 cut(s) 494
Kzo9I GATC 4 cut(s) 64, 142, 220, 402
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 3 cut(s) 130, 203, 482
LpnPI CCDG 9 cut(s) 67, 75, 104, 104, 160, 204, 221, 457, 464
Lsp1109I GCAGC 2 cut(s) 127, 366
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 56, 124
MalI GATC 4 cut(s) 66, 144, 222, 404
MboI GATC 4 cut(s) 64, 142, 220, 402
MboII GAAGA 7 cut(s) 3, 49, 119, 122, 221, 224, 230
MflI RGATCY 2 cut(s) 64, 220
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 3 cut(s) 178, 326, 488
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 79, 92, 193, 393, 507
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 241, 491, 502
NdeII GATC 4 cut(s) 64, 142, 220, 402
NlaIII CATG 2 cut(s) 248, 453
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 248, 453
OliI CACNNNNGTG 1 cut(s) 254
PaeI GCATGC 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 117, 381
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspFI CCCAGC 2 cut(s) 90, 118
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 64, 220
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 116, 380
Sau3AI GATC 4 cut(s) 64, 142, 220, 402
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 261
SetI ASST 5 cut(s) 120, 208, 300, 325, 381
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 248
Sse9I AATT 3 cut(s) 178, 326, 488
SsiI CCGC 2 cut(s) 307, 368
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 141, 459
TasI AATT 3 cut(s) 178, 326, 488
TatI WGTACW 1 cut(s) 339
TscAI CASTG 2 cut(s) 423, 451
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 115, 379
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 231, 441
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 423, 451
XapI RAATTY 1 cut(s) 178
XceI RCATGY 2 cut(s) 248, 453
XmiI GTMKAC 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.