Rw6G024100

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013523
Physical Location & Seq
Forward (+)
46890848 .. 46896008
5161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024100.1

Sequence Viewer

Length: 474 bp
ATGGACTTATCTTCGTGGTTCCGGCGCACCCTTCTGCGGAACACTGAAAAGACCCAGAACCCAGATCCCCCAAAGCCAAATGAACCTGAACAAGAGCTACTTGGAGTCACGGAGCAGTTGGTCAATCATGTCAAGTCTTTCACTTTAGAAACCTTCAAGACTTTCCCTCTCCCAGAAAATCTCTCGGAATGGCAGGAAAGGCATGCCATGCTTGTGCTCTCAAAAGTGAAGGAACTTTCCCACCTAAGATATAAGCTATGCCCAGGCCACATGAAGGAACATCAATTTTGGAGAGTATACTTTATGCTTGTCAAGAAACAGGTGGCCGAATACGAGCTACGTGCCATACAACTAGCAAGGCTCAAAGAAGTGACAATGGAAAATGAAAGGTCTACAAGTGCTGATGCATGTGAAGTTGAAATGGCAGAAGCAAAGCACAATGCAGTAGCAAGCTTAGCACCTACAAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

157

Amino Acids

18.33

Weight (kDa)

6.6

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 63 - 106 1e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 297, 392
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 36, 274
AgsI TTSAA 2 cut(s) 157, 419
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 4 cut(s) 97, 256, 337, 453
AluI AGCT 4 cut(s) 97, 256, 337, 453
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 1 cut(s) 59
AoxI GGCC 2 cut(s) 265, 324
AspLEI GCGC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 1 cut(s) 353
BlpI GCTNAGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 394
Bpu1102I GCTNAGC 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 274
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 36, 274
BshFI GGCC 2 cut(s) 267, 326
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 36, 274
BsnI GGCC 2 cut(s) 267, 326
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 1 cut(s) 64
Bsp1720I GCTNAGC 1 cut(s) 454
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 267, 326
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 64
BssNAI GTATAC 1 cut(s) 298
Bst1107I GTATAC 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 204, 451
BstDEI CTNAG 2 cut(s) 245, 454
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 3 cut(s) 199, 208, 455
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 206, 411
BstSCI CCNGG 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 267, 326
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 204, 451
CfoI GCGC 1 cut(s) 27
CviAII CATG 5 cut(s) 128, 203, 208, 271, 408
CviJI RGCY 8 cut(s) 76, 97, 256, 267, 326, 337, 361, 453
CviKI_1 RGCY 8 cut(s) 76, 97, 256, 267, 326, 337, 361, 453
DdeI CTNAG 2 cut(s) 245, 454
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 5 cut(s) 131, 206, 211, 274, 411
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 5 cut(s) 127, 202, 207, 270, 407
FblI GTMKAC 2 cut(s) 297, 392
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 26
HaeIII GGCC 2 cut(s) 267, 326
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 27
Hin1II CATG 5 cut(s) 131, 206, 211, 274, 411
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 298, 393
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 157, 313
Hpy8I GTNNAC 2 cut(s) 298, 393
HpyAV CCTTC 4 cut(s) 41, 163, 223, 268
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 2 cut(s) 407, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 208, 455
HpyF3I CTNAG 2 cut(s) 245, 454
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 5 cut(s) 131, 206, 211, 274, 411
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 9 cut(s) 35, 68, 75, 99, 179, 186, 249, 276, 305
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 106, 370
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 284
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 409
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 199, 208, 455
NdeII GATC 1 cut(s) 64
NlaIII CATG 5 cut(s) 131, 206, 211, 274, 411
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 106, 370
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 2 cut(s) 206, 411
PaeI GCATGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 20
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PsuI RGATCY 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 212
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 212
SphI GCATGC 1 cut(s) 206
Sse9I AATT 1 cut(s) 284
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 343
TasI AATT 1 cut(s) 284
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 2 cut(s) 106, 370
Tsp45I GTSAC 2 cut(s) 106, 370
TspDTI ATGAA 3 cut(s) 96, 287, 399
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 49
XceI RCATGY 2 cut(s) 206, 411
XmiI GTMKAC 2 cut(s) 297, 392
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.