MD10G1164600.v1.1

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013523
Physical Location & Seq
Forward (+)
25535307 .. 25537585
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1164600.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGATTTATCTTCGTGGTTCCGACGCAAACTCTTGAAGAATAGCGAAGAGACCAAAAGCCCAGATCCCTCAGAGCAAACCCTCATTCCCCAACAAAACAAAAAGGAAGAAGAGCAGCTGGGAGTCACAGAACAATTGGTCGATCTTGTCAAGTCCTTCACTTTGGACACTTTCAGGAATTTCCCACTTCCAGATGGTGAGGGAGCTGAAGAAGATGAAGATCTGTCTGGATGGCAGGAAAGGCATGCCACCATTGTGCTTTCAAGAGTGAAGGAGCTTTCACATCTGAGATATAAGCTATGCCCCCGCTACCTGAAGGAACGTCAATTTTGGAGAGTGTACTTTATGCTTGTCAAGAAACAAGTGGCGGCATACGAGCTGTGTGCGATACAGCAAGAGAGGATCAAAGAAATGGCAGTGGAGAATGAAAAGTCTACAAATACCAGTGCATGTGAAGTCGAAATGTCAGAAGCAAAGCAGGGAGCAAAATTAGCGCCTCCAACGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

170

Amino Acids

19.64

Weight (kDa)

5.41

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 74 - 120 3.6e-09 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 434
AciI CCGC 2 cut(s) 307, 368
AclWI GGATC 2 cut(s) 59, 410
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 228, 335
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 2 cut(s) 37, 264
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 5 cut(s) 118, 206, 277, 298, 379
AluI AGCT 5 cut(s) 118, 206, 277, 298, 379
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 59, 410
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 178
AspLEI GCGC 1 cut(s) 496
AsuHPI GGTGA 1 cut(s) 209
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 188, 225
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcoDI GTCTC 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 497
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 116, 369
BlsI GCNGC 2 cut(s) 117, 370
BmiI GGNNCC 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 444
Bse8I GATNNNNATC 1 cut(s) 219
BseGI GGATG 1 cut(s) 236
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 2 cut(s) 84, 278
BseNI ACTGG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 127
BseYI CCCAGC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 4 cut(s) 64, 142, 220, 402
BspACI CCGC 2 cut(s) 307, 368
BspCNI CTCAG 2 cut(s) 83, 279
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 59, 410
BspQI GCTCTTC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 444
BssMI GATC 4 cut(s) 64, 142, 220, 402
Bst6I CTCTTC 2 cut(s) 42, 105
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 70, 287
BstF5I GGATG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 4 cut(s) 67, 145, 223, 405
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 64, 142, 220, 402
BstMWI GCNNNNNNNGC 3 cut(s) 241, 491, 502
BstNSI RCATGY 2 cut(s) 248, 453
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 64, 220
BstYI RGATCY 2 cut(s) 64, 220
BtsCI GGATG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 423, 451
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 1 cut(s) 496
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 245, 450
CviJI RGCY 6 cut(s) 60, 118, 206, 277, 298, 379
CviKI_1 RGCY 6 cut(s) 60, 118, 206, 277, 298, 379
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 70, 287
DpnI GATC 4 cut(s) 66, 144, 222, 404
DpnII GATC 4 cut(s) 64, 142, 220, 402
Eam1104I CTCTTC 2 cut(s) 42, 105
EarI CTCTTC 2 cut(s) 42, 105
Eco31I GGTCTC 1 cut(s) 44
Eco57I CTGAAG 2 cut(s) 228, 335
FaeI CATG 2 cut(s) 248, 453
FaiI YATR 7 cut(s) 246, 294, 301, 347, 373, 451, 508
FatI CATG 2 cut(s) 244, 449
FauI CCCGC 1 cut(s) 314
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 116, 369
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 116, 369
GlaI GCGC 1 cut(s) 495
GluI GCNGC 2 cut(s) 116, 369
GsaI CCCAGC 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 497
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 496
Hin1II CATG 2 cut(s) 248, 453
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HinfI GANTC 1 cut(s) 123
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 340, 435
Hpy188I TCNGA 4 cut(s) 23, 73, 288, 469
Hpy188III TCNNGA 6 cut(s) 34, 175, 191, 228, 264, 355
Hpy8I GTNNAC 2 cut(s) 340, 435
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 166, 265, 310
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 491, 502
HpyF3I CTNAG 2 cut(s) 70, 287
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 2 cut(s) 248, 453
HspAI GCGC 1 cut(s) 494
Kzo9I GATC 4 cut(s) 64, 142, 220, 402
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 3 cut(s) 203, 274, 482
LpnPI CCDG 9 cut(s) 75, 104, 160, 204, 213, 221, 326, 457, 464
Lsp1109I GCAGC 1 cut(s) 127
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 66, 144, 222, 404
MboI GATC 4 cut(s) 64, 142, 220, 402
MboII GAAGA 8 cut(s) 3, 49, 59, 119, 122, 221, 224, 230
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 2 cut(s) 64, 220
MluCI AATT 4 cut(s) 134, 178, 326, 488
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 79, 92, 193, 393, 507
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 118
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 241, 491, 502
NdeII GATC 4 cut(s) 64, 142, 220, 402
NlaIII CATG 2 cut(s) 248, 453
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 248, 453
OliI CACNNNNGTG 1 cut(s) 254
PaeI GCATGC 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 105
PkrI GCNGC 2 cut(s) 117, 370
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 64, 220
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 116, 369
Sau3AI GATC 4 cut(s) 64, 142, 220, 402
SchI GAGTC 1 cut(s) 132
SetI ASST 7 cut(s) 120, 208, 279, 300, 315, 325, 381
SmiMI CAYNNNNRTG 1 cut(s) 254
SphI GCATGC 1 cut(s) 248
Sse9I AATT 4 cut(s) 134, 178, 326, 488
SsiI CCGC 2 cut(s) 307, 368
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 141, 459
TasI AATT 4 cut(s) 134, 178, 326, 488
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 371
TscAI CASTG 2 cut(s) 423, 451
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 231, 441
TspRI CASTG 2 cut(s) 423, 451
XapI RAATTY 1 cut(s) 178
XceI RCATGY 2 cut(s) 248, 453
XmiI GTMKAC 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.