RchiOBHm_Chr6g0284891

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013523
Physical Location & Seq
Forward (+)
48187113 .. 48193284
6172 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25551

Sequence Viewer

Length: 531 bp
ATGGACTTATCTTCGTGGTTCCGGCGCAACCTTCTGCGGAACACTGAAAAGACCCAGAACCCAGATCCCCCAAAGCCAAATGAACCTGAACAAGAGCTACTTGGAGTCACGGAGCAGTTGATCAATCATGTCAAGTCTTTCACTTTAGAAACCTTCAAGACTTTCCCTCTCCCAGATGATGAAGGAGCTACTTCTGGTGACAACTCTCTGACAACTTCAAGCAACATTCAGAAAGATCTCTCGGAATGGCAGGAAAGGCATGCCATGTTTGTGCTCTCAAAAGTGAAGGAACTTTCCCACCTAAGATATAAGCTATGCCCAGGCCACATGAAGGAACATCAATTTTGGAGAGTATACTTTATGCTTGTCAAGAAACAGGTGGCCGAATATGAGCTACGTGCCATACAACTAGCAAGGCTCAAAGAAGTGACAATGGAAAATGAAAGGTCAAGTGCTGCTGATGGATGTGAAGTTGAAATGGCAGAAGCAAAGCACAATGCAGTTGCAAGCTTAGCACCTACAAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

176

Amino Acids

20.24

Weight (kDa)

5.89

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 79 - 125 6.4e-10 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 157, 219, 476
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 5 cut(s) 97, 188, 313, 394, 510
AluI AGCT 5 cut(s) 97, 188, 313, 394, 510
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 1 cut(s) 59
AoxI GGCC 2 cut(s) 322, 381
ApeKI GCWGC 1 cut(s) 455
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 455
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 120
BfaI CTAG 1 cut(s) 410
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 456
BlpI GCTNAGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 511
BsaAI YACGTR 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 324, 383
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 331
BsnI GGCC 2 cut(s) 324, 383
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 64, 120, 235
Bsp1720I GCTNAGC 1 cut(s) 511
BspACI CCGC 1 cut(s) 37
BspANI GGCC 2 cut(s) 324, 383
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 64, 120, 235
BssNAI GTATAC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 261, 508
BstDEI CTNAG 2 cut(s) 302, 511
BstF5I GGATG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 3 cut(s) 67, 123, 238
BstMBI GATC 3 cut(s) 64, 120, 235
BstMWI GCNNNNNNNGC 2 cut(s) 256, 512
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 2 cut(s) 64, 235
BstYI RGATCY 2 cut(s) 64, 235
BstZ17I GTATAC 1 cut(s) 355
BsuRI GGCC 2 cut(s) 324, 383
BtsCI GGATG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 261, 508
CfoI GCGC 1 cut(s) 27
CviAII CATG 4 cut(s) 128, 260, 265, 328
CviJI RGCY 9 cut(s) 76, 97, 188, 313, 324, 383, 394, 418, 510
CviKI_1 RGCY 9 cut(s) 76, 97, 188, 313, 324, 383, 394, 418, 510
DdeI CTNAG 2 cut(s) 302, 511
DpnI GATC 3 cut(s) 66, 122, 237
DpnII GATC 3 cut(s) 64, 120, 235
EaeI YGGCCR 1 cut(s) 381
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 4 cut(s) 131, 263, 268, 331
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FatI CATG 4 cut(s) 127, 259, 264, 327
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 410
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 324, 383
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 27
Hin1II CATG 4 cut(s) 131, 263, 268, 331
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 508
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 3 cut(s) 210, 231, 244
Hpy188III TCNNGA 2 cut(s) 157, 370
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 5 cut(s) 41, 163, 176, 280, 325
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 2 cut(s) 500, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 512
HpyF3I CTNAG 2 cut(s) 302, 511
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 4 cut(s) 131, 263, 268, 331
HspAI GCGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 3 cut(s) 64, 120, 235
LmnI GCTCC 2 cut(s) 112, 185
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 3 cut(s) 106, 197, 427
MalI GATC 3 cut(s) 66, 122, 237
MboI GATC 3 cut(s) 64, 120, 235
MboII GAAGA 1 cut(s) 3
MflI RGATCY 2 cut(s) 64, 235
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 256, 512
NdeII GATC 3 cut(s) 64, 120, 235
NlaIII CATG 4 cut(s) 131, 263, 268, 331
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 3 cut(s) 106, 197, 427
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 20
PsrI GAACNNNNNNTAC 2 cut(s) 81, 113
PsuI RGATCY 2 cut(s) 64, 235
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 3 cut(s) 64, 120, 235
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 269
SphI GCATGC 1 cut(s) 263
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 319
TaiI ACGT 1 cut(s) 400
TasI AATT 1 cut(s) 341
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 3 cut(s) 106, 197, 427
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 3 cut(s) 106, 197, 427
TspDTI ATGAA 4 cut(s) 96, 195, 344, 456
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 49
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.