Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016026

Physical Location & Seq

Genomic Coordinates Reverse (-)

9146271 .. 9148525

Gene Structure 2255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTTGAAGCTTTCGTGTAATGTGACTGATTCTAAGTTACAGAGAAGCTTACTCTTCTTCTCCCATTCATATCGATCTGATCCGGTGAATTTCATCCGTCGGAGAATTGTCTCTTGTTCTCAGACGAAGAAGACAGGTTTGGTTCCTTTGCGTGCTGTTGTATCTGCTGATCAAGGAAGTGTGGTTCAAGGTTTGGCTACTCTCGCGGATCAGCTCCGATTAGGTAGTTTGACTGAAGATGGTTTATCTTATAAAGAGAAGTTTGTTGTTAGATCTTACGAAGTGGGTAGTAACAAAACCGCTACTGTTGAAACCATTGCTAATCTTTTACAGGAGGTGGGATGTAATCATGCACAAAGTGTTGGTTTTTCGACTGATGGGTTTGCAACAACAACTACTATGAGGAAGTTGCATCTCATTTGGGTTACTGCGAGAATGCATATCGAGATCTATAAGTACCCTGCTTGGGGTGATGTGGTTGAGATAGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGGATTCTTAAGGATTCTGTCACTGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATGATGAACCAAGACACGAGACGGCTTCAGAAAGTTTCTGATGATGTTCGGGACGAGTACTTGGTCTTCTGTCCTCAAGAACCGAGGTTAGCATTTCCGGAAGAGAATAACAGAAGCTTGAAGAAAATCCCGAAACTCGAAGATCCGGCTCAGTATTCAATGATTGGGCTTAAGCCTAGACGAGCTGATCTCGACATGAACCAGCATGTCAATAATGTCACCTATATTGGATGGGTTCTCGAGAGCATACCACAAGAAATTGTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTATAGAAGAGAATGTCAACAAGACGATGTGGTGGATTCACTCACCACCACCACCTCTGAAATTGGTGGAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCACCTCCTGAGGTTGTCTGGAGATGGTCAGGAGATCAACCGCGGGACAACTCTGTGGAGAAAGAAGCCTTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 map00061

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

362

Amino Acids

40.82

Weight (kDa)

7.08

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-ACP_TE	PF01643	81 - 217	3.9e-44	Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C	PF20791	245 - 358	1.4e-29	Acyl-ACP thioesterase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25110
fragaria_vesca	FvH4_2g18600
malus_domestica	MD02G1127500.v1.1 MD05G1172000.v1.1
prunus_persica	Prupe.8G199400_v2.0.a1
pyrus_communis	pycom02g09960 pycom05g15870
rosa_chinensis	RchiOBHm_Chr6g0284171
rosa_laevigata	RLG00000012762
rosa_multiflora	Rmu_sc0003778.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184830
rosa_rugosa	Rorug06G0161500
rosa_samantha	Rh6BG274800 Rh6DG269200
rosa_wichuraiana	Rw6G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	855
AccII	CGCG	2 cut(s)	206, 1053
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	4 cut(s)	206, 300, 1051, 1053
AclWI	GGATC	3 cut(s)	74, 216, 728
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	3 cut(s)	255, 602, 854
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	2 cut(s)	458, 650
AfiI	CCNNNNNNNGG	2 cut(s)	466, 467
AflII	CTTAAG	2 cut(s)	539, 761
AgsI	TTSAA	6 cut(s)	7, 188, 311, 712, 750, 1083
AhdI	GACNNNNNGTC	1 cut(s)	495
AjiI	CACGTC	1 cut(s)	975
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 498, 530
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	6 cut(s)	10, 48, 214, 708, 776, 868
AluI	AGCT	6 cut(s)	10, 48, 214, 708, 776, 868
Alw26I	GTCTC	3 cut(s)	115, 482, 604
AlwI	GGATC	3 cut(s)	74, 216, 728
Ama87I	CYCGRG	1 cut(s)	830
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	2 cut(s)	568, 988
ApoI	RAATTY	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	988
AsuHPI	GGTGA	6 cut(s)	97, 482, 569, 601, 802, 922
AvaI	CYCGRG	1 cut(s)	830
AxyI	CCTNAGG	1 cut(s)	1019
BarI	GAAGNNNNNNTAC	2 cut(s)	641, 673
BauI	CACGAG	2 cut(s)	607, 863
BbsI	GAAGAC	2 cut(s)	137, 649
BccI	CCATC	4 cut(s)	233, 371, 816, 1028
BceAI	ACGGC	2 cut(s)	555, 629
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	115, 482, 604
BfaI	CTAG	1 cut(s)	768
BfrI	CTTAAG	2 cut(s)	539, 761
BglII	AGATCT	2 cut(s)	272, 447
BmcAI	AGTACT	1 cut(s)	650
BmeRI	GACNNNNNGTC	1 cut(s)	495
BmeT110I	CYCGRG	1 cut(s)	830
BmgBI	CACGTC	1 cut(s)	975
BmgT120I	GGNCC	1 cut(s)	988
BmiI	GGNNCC	2 cut(s)	144, 958
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	2 cut(s)	137, 649
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BpmI	CTGGAG	1 cut(s)	1050
BpuEI	CTTGAG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	674, 1051
BsaWI	WCCGGW	2 cut(s)	82, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	466, 467
Bse1I	ACTGG	3 cut(s)	559, 571, 1003
Bse21I	CCTNAGG	1 cut(s)	1019
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	688
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	674, 1051
BseGI	GGATG	3 cut(s)	93, 347, 827
BseLI	CCNNNNNNNGG	2 cut(s)	466, 467
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	134, 755, 1010
BseNI	ACTGG	3 cut(s)	559, 571, 1003
Bsh1236I	CGCG	2 cut(s)	206, 1053
BshFI	GGCC	2 cut(s)	570, 990
BshVI	ATCGAT	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	830
BsiSI	CCGG	3 cut(s)	83, 689, 737
BslFI	GGGAC	3 cut(s)	532, 656, 1069
BslI	CCNNNNNNNGG	2 cut(s)	466, 467
BsmAI	GTCTC	3 cut(s)	115, 482, 604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	3 cut(s)	532, 656, 1069
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	570, 990
BsoBI	CYCGRG	1 cut(s)	830
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
BspACI	CCGC	4 cut(s)	206, 300, 1051, 1053
BspANI	GGCC	2 cut(s)	570, 990
BspCNI	CTCAG	3 cut(s)	133, 754, 1011
BspDI	ATCGAT	1 cut(s)	73
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	2 cut(s)	206, 1053
BspLI	GGNNCC	2 cut(s)	144, 958
BspPI	GGATC	3 cut(s)	74, 216, 728
BspTI	CTTAAG	2 cut(s)	539, 761
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	559, 571, 1003
BssECI	CCNNGG	2 cut(s)	674, 1051
BssMI	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
BssSI	CACGAG	2 cut(s)	607, 863
Bst2BI	CACGAG	2 cut(s)	607, 863
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	3 cut(s)	59, 687, 889
BstAFI	CTTAAG	2 cut(s)	539, 761
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	4 cut(s)	33, 120, 741, 1019
BstDSI	CCRYGG	1 cut(s)	1051
BstF5I	GGATG	3 cut(s)	93, 347, 827
BstFNI	CGCG	2 cut(s)	206, 1053
BstKTI	GATC	9 cut(s)	77, 82, 172, 211, 275, 450, 736, 781, 1047
BstMAI	GTCTC	3 cut(s)	115, 482, 604
BstMBI	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 987
BstNSI	RCATGY	1 cut(s)	800
BstUI	CGCG	2 cut(s)	206, 1053
BstV2I	GAAGAC	2 cut(s)	137, 649
BstX2I	RGATCY	3 cut(s)	272, 447, 733
BstYI	RGATCY	3 cut(s)	272, 447, 733
Bsu15I	ATCGAT	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	1019
BsuRI	GGCC	2 cut(s)	570, 990
BsuTUI	ATCGAT	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	1051
BtrI	CACGTC	1 cut(s)	975
BtsCI	GGATG	3 cut(s)	93, 347, 827
BtsIMutI	CAGTG	2 cut(s)	552, 564
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	988
Cfr42I	CCGCGG	1 cut(s)	1054
ClaI	ATCGAT	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	457, 649
CviAII	CATG	3 cut(s)	350, 787, 797
CviQI	GTAC	2 cut(s)	457, 649
DdeI	CTNAG	4 cut(s)	33, 120, 741, 1019
DpnI	GATC	9 cut(s)	76, 81, 171, 210, 274, 449, 735, 780, 1046
DpnII	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
DraIII	CACNNNGTG	1 cut(s)	359
DriI	GACNNNNNGTC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	3 cut(s)	59, 687, 889
Eam1105I	GACNNNNNGTC	1 cut(s)	495
EarI	CTCTTC	3 cut(s)	59, 687, 889
Eco57I	CTGAAG	3 cut(s)	255, 602, 854
Eco81I	CCTNAGG	1 cut(s)	1019
Eco88I	CYCGRG	1 cut(s)	830
EcoT22I	ATGCAT	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	3 cut(s)	353, 790, 800
FaqI	GGGAC	3 cut(s)	532, 656, 1069
FatI	CATG	3 cut(s)	349, 786, 796
FauI	CCCGC	1 cut(s)	1046
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	855
FokI	GGATG	3 cut(s)	80, 354, 834
FspBI	CTAG	1 cut(s)	768
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	570, 990
HapII	CCGG	3 cut(s)	83, 689, 737
Hin1II	CATG	3 cut(s)	353, 790, 800
HincII	GTYRAC	1 cut(s)	905
HindII	GTYRAC	1 cut(s)	905
HindIII	AAGCTT	3 cut(s)	8, 46, 706
HinfI	GANTC	4 cut(s)	29, 535, 545, 923
HpaII	CCGG	3 cut(s)	83, 689, 737
HphI	GGTGA	6 cut(s)	97, 482, 569, 601, 802, 922
Hpy166II	GTNNAC	2 cut(s)	856, 905
Hpy188I	TCNGA	8 cut(s)	79, 102, 123, 218, 501, 621, 631, 946
Hpy8I	GTNNAC	2 cut(s)	856, 905
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	3 cut(s)	500, 504, 1089
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	974
HpyCH4V	TGCA	5 cut(s)	353, 386, 412, 439, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 987
HpyF3I	CTNAG	4 cut(s)	33, 120, 741, 1019
HpySE526I	ACGT	1 cut(s)	974
Hsp92II	CATG	3 cut(s)	353, 790, 800
Kpn2I	TCCGGA	1 cut(s)	688
Ksp22I	TGATCA	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	1054
Kzo9I	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
LmnI	GCTCC	1 cut(s)	219
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	1 cut(s)	974
MaeIII	GTNAC	7 cut(s)	22, 36, 290, 424, 550, 562, 808
MalI	GATC	9 cut(s)	76, 81, 171, 210, 274, 449, 735, 780, 1046
MboI	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
MflI	RGATCY	3 cut(s)	272, 447, 733
MluCI	AATT	4 cut(s)	88, 105, 849, 948
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	328, 396, 669, 675, 952, 1014, 1025
Mph1103I	ATGCAT	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	688
MseI	TTAA	3 cut(s)	540, 762, 1087
MspA1I	CMGCKG	1 cut(s)	1053
MspCI	CTTAAG	2 cut(s)	539, 761
MspI	CCGG	3 cut(s)	83, 689, 737
Mva1269I	GAATGC	1 cut(s)	441
MvnI	CGCG	2 cut(s)	206, 1053
MwoI	GCNNNNNNNGC	2 cut(s)	203, 987
NdeII	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
NlaIII	CATG	3 cut(s)	353, 790, 800
NlaIV	GGNNCC	2 cut(s)	144, 958
NmuCI	GTSAC	4 cut(s)	22, 550, 562, 808
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	800
PaeR7I	CTCGAG	1 cut(s)	830
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	4 cut(s)	29, 535, 545, 923
PsiI	TTATAA	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	144, 958
PspPI	GGNCC	1 cut(s)	988
PsuI	RGATCY	3 cut(s)	272, 447, 733
RsaI	GTAC	2 cut(s)	458, 650
RsaNI	GTAC	2 cut(s)	457, 649
SacII	CCGCGG	1 cut(s)	1054
SaqAI	TTAA	3 cut(s)	540, 762, 1087
Sau3AI	GATC	9 cut(s)	74, 79, 169, 208, 272, 447, 733, 778, 1044
Sau96I	GGNCC	1 cut(s)	988
ScaI	AGTACT	1 cut(s)	650
SfaNI	GCATC	1 cut(s)	421
Sfr274I	CTCGAG	1 cut(s)	830
Sfr303I	CCGCGG	1 cut(s)	1054
SgrBI	CCGCGG	1 cut(s)	1054
SlaI	CTCGAG	1 cut(s)	830
SmlI	CTYRAG	4 cut(s)	539, 666, 761, 830
SmoI	CTYRAG	4 cut(s)	539, 666, 761, 830
Sse9I	AATT	4 cut(s)	88, 105, 849, 948
SsiI	CCGC	4 cut(s)	206, 300, 1051, 1053
SspMI	CTAG	1 cut(s)	768
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	977
TaqI	TCGA	6 cut(s)	73, 371, 444, 729, 783, 831
TasI	AATT	4 cut(s)	88, 105, 849, 948
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	4 cut(s)	29, 535, 545, 923
Tru1I	TTAA	3 cut(s)	540, 762, 1087
Tru9I	TTAA	3 cut(s)	540, 762, 1087
TscAI	CASTG	2 cut(s)	559, 571
TseFI	GTSAC	4 cut(s)	22, 550, 562, 808
Tsp45I	GTSAC	4 cut(s)	22, 550, 562, 808
TspDTI	ATGAA	4 cut(s)	57, 82, 611, 803
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	559, 571
Vha464I	CTTAAG	2 cut(s)	539, 761
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	830
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	1 cut(s)	768
ZrmI	AGTACT	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.