Rroxscaffold_7G00184830

Plays an essential role in chain termination during de novo fatty acid synthesis

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
24118781 .. 24121568
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184830.1

Sequence Viewer

Length: 1152 bp
ATGATGAAGCTTTCCTGCAATGCGGTGGACCAAATCCACGGCGGGGCCCAATGCCGCTTCTTGGGCCCGCAGAAGTCCCGGCCCGGCTTCGCTCGCCGCCGGAAAGAAGCTCCTCCTTCTCCGCCTTCGATTGTTACGTACAGCGGTGGTTCGTCTTCGTCGAGGAGGGGGATTGTGGCGGTGGTGTCGGACCGGGGAGCCGTGGGCGCGGAGAATGGGCCGGGTCGGGTCGAGCCCATCAGCCTGGCGGAGAGGCTGAGGCAGGGGAGCTTGGCGGAGGACGGCAAGTCGTATAGGGAGTCCTTTATAGTCAGGAGCTATGAGGTTGGGATGAACAAGACTGCTACTGTGGAGACCATTGCCAATCTGTTGCAGGAGGTTGGATGCAACCATGCTCAAGTTGTGGGATTTTCAACCGACGGGTTTGCAACGACAACCACCATGAGGGAATTGCATCTAATATGGGTTACTGCTCGCATGCACATTGAAATCTACAAATATCCAGCTTGGAGTGATGTTGTTGAAATAGAAACGTGGTGCCAAGGGGAAGGGAGAATTGGAACTAGACGTGATTGGATACTTAAGGACTATGCCACTGGGCAAGTCATTGGAAGAGCGACAAGCAAGTGGGTGATGATGAACCAAGACACTAGGAGGCTTCAGAAAGTCAGTGATGATGTTCGCGAAGAGCATCTAGCTTTTGCTCCACGAGAGCTAAGATTAGCATTCCCCGAGAAGAACAATAGTAGCTTGAAGAAAATAGCTAAACTAGAAGATCCTGCTCAGTATTCCAGACTAGGACTCGTGCCAAGGAGAGCAGACCTGGACATGAACCAGCATGTTAATAATGTCACCTACATAGGATGGGTTCTAGAGAGCATGCCTCAAGAAGTCATTGATAGCCATGAACTCCAGACTATCACCTTAGATTACAGGCGAGAGTGTCAACAAGATGACATAGTCGATTCCCTTACTAATGTGGAAAATGTAGAGAATGCTGAAGCAAGTTCGAAGGGAACAAATGGGTCTCCTGCTGCAACAGAAAATCAAAACGACTACCGTCAGTTCTTGCATCTACTGAGAATATCAGGCGATGGATCAGAAATAAACAGAGGACGCACAGTGTGGAGAAAGAAACCGGCAAGACGATAA

Protein Analysis

383

Amino Acids

42.99

Weight (kDa)

8.72

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 95 - 230 2.2e-44 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 259 - 378 3.1e-28 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25110
fragaria_vesca FvH4_2g18600
malus_domestica MD02G1127500.v1.1 MD05G1172000.v1.1
prunus_persica Prupe.8G199400_v2.0.a1
pyrus_communis pycom02g09960 pycom05g15870
rosa_chinensis RchiOBHm_Chr6g0284171
rosa_laevigata RLG00000012762
rosa_multiflora Rmu_sc0003778.1_g000013
rosa_roxburghii Rroxscaffold_7G00184830
rosa_rugosa Rorug06G0161500
rosa_samantha Rh6BG274800 Rh6DG269200
rosa_wichuraiana Rw6G023590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 537
AccII CGCG 2 cut(s) 209, 684
AclWI GGATC 2 cut(s) 770, 1105
AcuI CTGAAG 2 cut(s) 644, 1020
AdeI CACNNNGTG 1 cut(s) 1125
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 43, 61, 444
AflII CTTAAG 1 cut(s) 581
AgsI TTSAA 4 cut(s) 414, 488, 524, 754
AhdI GACNNNNNGTC 1 cut(s) 286
AjiI CACGTC 1 cut(s) 569
AjnI CCWGG 2 cut(s) 243, 822
AjuI GAANNNNNNNTTGG 2 cut(s) 540, 572
AluBI AGCT 9 cut(s) 10, 110, 270, 318, 506, 698, 715, 750, 764
AluI AGCT 9 cut(s) 10, 110, 270, 318, 506, 698, 715, 750, 764
Alw26I GTCTC 2 cut(s) 347, 1032
AlwI GGATC 2 cut(s) 770, 1105
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 4 cut(s) 45, 64, 80, 218
ApaI GGGCCC 2 cut(s) 49, 68
ApeKI GCWGC 1 cut(s) 1034
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 190, 218
AsuC2I CCSGG 4 cut(s) 79, 84, 194, 222
AsuHPI GGTGA 3 cut(s) 643, 844, 913
AsuII TTCGAA 1 cut(s) 1010
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 2 cut(s) 28, 190
BaeGI GKGCMC 2 cut(s) 49, 68
BanI GGYRCC 1 cut(s) 537
BanII GRGCYC 3 cut(s) 49, 68, 237
BauI CACGAG 2 cut(s) 708, 803
BbsI GAAGAC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 1021
BccI CCATC 3 cut(s) 245, 858, 1088
BceAI ACGGC 3 cut(s) 55, 185, 298
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 2 cut(s) 245, 824
BciVI GTATCC 1 cut(s) 570
BcnI CCSGG 4 cut(s) 79, 84, 194, 222
BcoDI GTCTC 2 cut(s) 347, 1032
BfaI CTAG 6 cut(s) 564, 651, 695, 770, 797, 872
BfrI CTTAAG 1 cut(s) 581
BfuI GTATCC 1 cut(s) 570
BisI GCNGC 3 cut(s) 55, 97, 1035
BlsI GCNGC 3 cut(s) 56, 98, 1036
Bme1390I CCNGG 6 cut(s) 79, 84, 194, 222, 245, 824
Bme18I GGWCC 2 cut(s) 28, 190
BmeRI GACNNNNNGTC 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 569
BmgT120I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 190, 218
BmiI GGNNCC 5 cut(s) 46, 47, 66, 199, 539
BmrFI CCNGG 6 cut(s) 79, 84, 194, 222, 245, 824
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 4 cut(s) 374, 463, 700, 1081
BmuI ACTGGG 1 cut(s) 606
BoxI GACNNNNGTC 1 cut(s) 1059
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 868, 900
BpmI CTGGAG 1 cut(s) 896
Bpu10I CCTNAGC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 1010
BpuEI CTTGAG 2 cut(s) 381, 870
BpuMI CCSGG 4 cut(s) 79, 84, 194, 222
BsaAI YACGTR 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 347, 1032
BsaJI CCNNGG 5 cut(s) 37, 193, 201, 541, 809
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 61, 444
Bse118I RCCGGY 1 cut(s) 1138
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 2 cut(s) 25, 357
BseBI CCWGG 2 cut(s) 245, 824
BseDI CCNNGG 5 cut(s) 37, 193, 201, 541, 809
BseGI GGATG 3 cut(s) 336, 389, 869
BseLI CCNNNNNNNGG 3 cut(s) 43, 61, 444
BseMI GCAATG 2 cut(s) 25, 357
BseMII CTCAG 3 cut(s) 248, 797, 1070
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 2 cut(s) 102, 178
BseSI GKGCMC 2 cut(s) 49, 68
BseXI GCAGC 1 cut(s) 1021
Bsh1236I CGCG 2 cut(s) 209, 684
BshFI GGCC 4 cut(s) 47, 66, 82, 220
BshNI GGYRCC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 6 cut(s) 79, 84, 100, 193, 221, 1139
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 43, 61, 444
BsmAI GTCTC 2 cut(s) 347, 1032
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 2 cut(s) 725, 1000
BsnI GGCC 4 cut(s) 47, 66, 82, 220
Bso31I GGTCTC 2 cut(s) 347, 1032
BsoBI CYCGRG 1 cut(s) 731
Bsp119I TTCGAA 1 cut(s) 1010
Bsp120I GGGCCC 2 cut(s) 45, 64
Bsp1286I GDGCHC 3 cut(s) 49, 68, 237
Bsp143I GATC 2 cut(s) 775, 1097
Bsp68I TCGCGA 1 cut(s) 684
BspANI GGCC 4 cut(s) 47, 66, 82, 220
BspCNI CTCAG 3 cut(s) 249, 796, 1071
BspFNI CGCG 2 cut(s) 209, 684
BspLI GGNNCC 5 cut(s) 46, 47, 66, 199, 539
BspPI GGATC 2 cut(s) 770, 1105
BspQI GCTCTTC 2 cut(s) 607, 681
BspT104I TTCGAA 1 cut(s) 1010
BspT107I GGYRCC 1 cut(s) 537
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 2 cut(s) 347, 1032
BsrDI GCAATG 2 cut(s) 25, 357
BsrFI RCCGGY 1 cut(s) 1138
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 1138
BssECI CCNNGG 5 cut(s) 37, 193, 201, 541, 809
BssMI GATC 2 cut(s) 775, 1097
BssSI CACGAG 2 cut(s) 708, 803
BssT1I CCWWGG 2 cut(s) 541, 809
Bst2BI CACGAG 2 cut(s) 708, 803
Bst2UI CCWGG 2 cut(s) 245, 824
Bst4CI ACNGT 3 cut(s) 349, 1061, 1123
Bst6I CTCTTC 2 cut(s) 607, 681
BstAFI CTTAAG 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 1010
BstC8I GCNNGC 5 cut(s) 68, 94, 475, 479, 881
BstDEI CTNAG 5 cut(s) 257, 716, 783, 925, 1079
BstDSI CCRYGG 2 cut(s) 37, 201
BstF5I GGATG 3 cut(s) 336, 389, 869
BstFNI CGCG 2 cut(s) 209, 684
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 2 cut(s) 778, 1100
BstMAI GTCTC 2 cut(s) 347, 1032
BstMBI GATC 2 cut(s) 775, 1097
BstMWI GCNNNNNNNGC 3 cut(s) 63, 93, 206
BstNI CCWGG 2 cut(s) 245, 824
BstNSI RCATGY 3 cut(s) 481, 842, 883
BstPAI GACNNNNGTC 1 cut(s) 1059
BstSCI CCNGG 6 cut(s) 77, 82, 192, 220, 243, 822
BstSLI GKGCMC 2 cut(s) 49, 68
BstSNI TACGTA 1 cut(s) 138
BstUI CGCG 2 cut(s) 209, 684
BstV1I GCAGC 1 cut(s) 1021
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 1 cut(s) 775
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 4 cut(s) 47, 66, 82, 220
BtgI CCRYGG 2 cut(s) 37, 201
BtgZI GCGATG 1 cut(s) 1107
BtrI CACGTC 1 cut(s) 569
BtsCI GGATG 3 cut(s) 336, 389, 869
BtsIMutI CAGTG 3 cut(s) 594, 676, 1128
BtuMI TCGCGA 1 cut(s) 684
Cac8I GCNNGC 5 cut(s) 68, 94, 475, 479, 881
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 1138
Cfr13I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 190, 218
CpoI CGGWCCG 1 cut(s) 190
CseI GACGC 1 cut(s) 1125
Csp6I GTAC 1 cut(s) 139
CspI CGGWCCG 1 cut(s) 190
CviAII CATG 7 cut(s) 392, 442, 478, 829, 839, 880, 905
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 5 cut(s) 257, 716, 783, 925, 1079
DpnI GATC 2 cut(s) 777, 1099
DpnII GATC 2 cut(s) 775, 1097
DraIII CACNNNGTG 1 cut(s) 1125
DriI GACNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 607, 681
Eam1105I GACNNNNNGTC 1 cut(s) 286
EarI CTCTTC 2 cut(s) 607, 681
EciI GGCGGA 3 cut(s) 111, 263, 290
Eco105I TACGTA 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 541, 809
Eco24I GRGCYC 3 cut(s) 49, 68, 237
Eco31I GGTCTC 2 cut(s) 347, 1032
Eco47I GGWCC 2 cut(s) 28, 190
Eco57I CTGAAG 2 cut(s) 644, 1020
Eco88I CYCGRG 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 243, 822
EcoT14I CCWWGG 2 cut(s) 541, 809
EcoT38I GRGCYC 3 cut(s) 49, 68, 237
ErhI CCWWGG 2 cut(s) 541, 809
FaeI CATG 7 cut(s) 395, 445, 481, 832, 842, 883, 908
FaqI GGGAC 1 cut(s) 61
FatI CATG 7 cut(s) 391, 441, 477, 828, 838, 879, 904
FauI CCCGC 2 cut(s) 35, 75
Fnu4HI GCNGC 3 cut(s) 55, 97, 1035
FokI GGATG 3 cut(s) 343, 396, 876
FriOI GRGCYC 3 cut(s) 49, 68, 237
Fsp4HI GCNGC 3 cut(s) 55, 97, 1035
FspBI CTAG 6 cut(s) 564, 651, 695, 770, 797, 872
GlaI GCGC 1 cut(s) 208
GluI GCNGC 3 cut(s) 55, 97, 1035
GsuI CTGGAG 1 cut(s) 896
HaeIII GGCC 4 cut(s) 47, 66, 82, 220
HapII CCGG 6 cut(s) 79, 84, 100, 193, 221, 1139
HgaI GACGC 1 cut(s) 1125
HhaI GCGC 1 cut(s) 209
Hin1II CATG 7 cut(s) 395, 445, 481, 832, 842, 883, 908
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 1 cut(s) 947
HindII GTYRAC 1 cut(s) 947
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 299, 801, 965
HpaII CCGG 6 cut(s) 79, 84, 100, 193, 221, 1139
HphI GGTGA 3 cut(s) 643, 844, 913
Hpy166II GTNNAC 2 cut(s) 28, 947
Hpy188I TCNGA 3 cut(s) 190, 663, 1102
Hpy188III TCNNGA 6 cut(s) 313, 683, 792, 872, 887, 913
Hpy8I GTNNAC 2 cut(s) 28, 947
Hpy99I CGWCG 2 cut(s) 163, 422
HpyAV CCTTC 4 cut(s) 126, 135, 542, 1006
HpyCH4III ACNGT 3 cut(s) 349, 1061, 1123
HpyCH4IV ACGT 3 cut(s) 137, 533, 568
HpyCH4V TGCA 8 cut(s) 18, 373, 387, 428, 454, 481, 1037, 1072
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 93, 206
HpyF3I CTNAG 5 cut(s) 257, 716, 783, 925, 1079
HpySE526I ACGT 3 cut(s) 137, 533, 568
Hsp92II CATG 7 cut(s) 395, 445, 481, 832, 842, 883, 908
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 775, 1097
LguI GCTCTTC 2 cut(s) 607, 681
LmnI GCTCC 5 cut(s) 115, 197, 267, 315, 709
Lsp1109I GCAGC 1 cut(s) 1021
LweI GCATC 4 cut(s) 374, 463, 700, 1081
MaeI CTAG 6 cut(s) 564, 651, 695, 770, 797, 872
MaeII ACGT 3 cut(s) 137, 533, 568
MaeIII GTNAC 3 cut(s) 133, 466, 850
MalI GATC 2 cut(s) 777, 1099
MboI GATC 2 cut(s) 775, 1097
MboII GAAGA 6 cut(s) 147, 624, 698, 748, 766, 785
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 3 cut(s) 49, 68, 237
MluCI AATT 2 cut(s) 449, 555
MlyI GAGTC 2 cut(s) 308, 795
MmeI TCCRAC 2 cut(s) 168, 361
MseI TTAA 2 cut(s) 582, 843
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 6 cut(s) 79, 84, 100, 193, 221, 1139
MspR9I CCNGG 6 cut(s) 79, 84, 194, 222, 245, 824
Mva1269I GAATGC 2 cut(s) 725, 1000
MvaI CCWGG 2 cut(s) 245, 824
MvnI CGCG 2 cut(s) 209, 684
MwoI GCNNNNNNNGC 3 cut(s) 63, 93, 206
NciI CCSGG 4 cut(s) 79, 84, 194, 222
NdeII GATC 2 cut(s) 775, 1097
NlaIII CATG 7 cut(s) 395, 445, 481, 832, 842, 883, 908
NlaIV GGNNCC 5 cut(s) 46, 47, 66, 199, 539
NmuCI GTSAC 1 cut(s) 850
NruI TCGCGA 1 cut(s) 684
NspI RCATGY 3 cut(s) 481, 842, 883
NspV TTCGAA 1 cut(s) 1010
PaeI GCATGC 2 cut(s) 481, 883
PciSI GCTCTTC 2 cut(s) 607, 681
PcsI WCGNNNNNNNCGW 2 cut(s) 134, 158
PctI GAATGC 2 cut(s) 725, 1000
PfeI GAWTC 1 cut(s) 965
PflFI GACNNNGTC 1 cut(s) 959
PkrI GCNGC 3 cut(s) 56, 98, 1036
PleI GAGTC 2 cut(s) 307, 795
PpsI GAGTC 2 cut(s) 307, 795
Ppu21I YACGTR 1 cut(s) 138
PshAI GACNNNNGTC 1 cut(s) 1059
Psp6I CCWGG 2 cut(s) 243, 822
PspGI CCWGG 2 cut(s) 243, 822
PspN4I GGNNCC 5 cut(s) 46, 47, 66, 199, 539
PspOMI GGGCCC 2 cut(s) 45, 64
PspPI GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 190, 218
PsuI RGATCY 1 cut(s) 775
PsyI GACNNNGTC 1 cut(s) 959
RruI TCGCGA 1 cut(s) 684
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
Rsr2I CGGWCCG 1 cut(s) 190
RsrII CGGWCCG 1 cut(s) 190
SapI GCTCTTC 2 cut(s) 607, 681
SaqAI TTAA 2 cut(s) 582, 843
SatI GCNGC 3 cut(s) 55, 97, 1035
Sau3AI GATC 2 cut(s) 775, 1097
Sau96I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 190, 218
SchI GAGTC 2 cut(s) 308, 795
ScrFI CCNGG 6 cut(s) 79, 84, 194, 222, 245, 824
SduI GDGCHC 3 cut(s) 49, 68, 237
SfaNI GCATC 4 cut(s) 374, 463, 700, 1081
SfuI TTCGAA 1 cut(s) 1010
SinI GGWCC 2 cut(s) 28, 190
SmlI CTYRAG 3 cut(s) 396, 581, 885
SmoI CTYRAG 3 cut(s) 396, 581, 885
SnaBI TACGTA 1 cut(s) 138
SphI GCATGC 2 cut(s) 481, 883
Sse9I AATT 2 cut(s) 449, 555
SspMI CTAG 6 cut(s) 564, 651, 695, 770, 797, 872
StyD4I CCNGG 6 cut(s) 77, 82, 192, 220, 243, 822
StyI CCWWGG 2 cut(s) 541, 809
TaaI ACNGT 3 cut(s) 349, 1061, 1123
TaiI ACGT 3 cut(s) 140, 536, 571
TaqI TCGA 5 cut(s) 128, 161, 231, 963, 1010
TasI AATT 2 cut(s) 449, 555
TauI GCSGC 2 cut(s) 57, 99
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 2 cut(s) 582, 843
Tru9I TTAA 2 cut(s) 582, 843
TscAI CASTG 3 cut(s) 601, 676, 1128
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 1 cut(s) 1034
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 5 cut(s) 20, 347, 653, 845, 921
TspRI CASTG 3 cut(s) 601, 676, 1128
Tth111I GACNNNGTC 1 cut(s) 959
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 28, 190
XbaI TCTAGA 1 cut(s) 871
XceI RCATGY 3 cut(s) 481, 842, 883
XspI CTAG 6 cut(s) 564, 651, 695, 770, 797, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.