RchiOBHm_Chr6g0284171

Plays an essential role in chain termination during de novo fatty acid synthesis

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
47467472 .. 47470622
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25485

Sequence Viewer

Length: 1137 bp
ATGATGAAGCTTTCCTGCAATGCGGTGGACCAAATCCACGGCGGGGCCCAATGCCGCTTCTTGGGCCCGCAGAAGTCCCGGCCCGGCTTCGCTCTCCGCCGGAAAGAAGCTCCGCCTTCGATTGTTACGTACAGCTGCGGTGGTTCGTCTTCGTCGAGGAGGGGGATTGTGGCGGTGGTGTCGGACCGGGGAGCCGTGGGCGCCGAGAATGGGCCGGGTCGGGTCGAGCCCATCAGCCTGGCGGACAGGCTGAGGCAGGGGAGCTTGGCGGAGGACGGCAAGTCGTATAGGGAGTGCTTTATAGTCAGGAGCTATGAGGTTGGGATGAACAAGACTGCTACCGTGGAGACGATTGCCAATCTGTTGCAGGAGGTTGGATGCAACCATGCTCAAGTTGTGGGATTTTCAACCGACGGGTTTGCAACGACAACCACCATGAGGGAATTGCATCTAATATGGGTCACTGCTCGCATGCACATTGAAATCTACAAATATCCAGCTTGGAGTGATGTTGTTGAAATAGAAACGTGGTGCCAAGGGGAAGGGAGAATTGGAACTAGACGTGATTGGATACTTAAGGACTATGCCACTGGGCAAGTCATTGGAAGAGCGACAAGTAAGTGGGTGATGATGAACCAAGACACTAGGAGGCTTCAGAAAGTCAGTGATGATGTTCGCGAAGAGCATCTAGCTTTTGCTCCACGAGAGCTAAGATTAGCATTCCCAGAGAAGAACAATAGTAGCTTGAAGAAAATAGCTAAACTAGAAGATCCTGCTCAGTATTCCAGACTAGGACTCGTGCCAAGGAGAGCAGACCTGGACATGAACCAGCATGTTAATAATGTCACCTACATAGGATGGGTTCTAGAGAGCATGCCTCAAGAAGTCATTGATAGCCATGAACTCCAGACTATCACCTTAGATTACAGGCGAGAGTGTCAACAAGATGACATAGTCGATTCCCTTACTAATGTAGAAAATGCTGAAGCGAGTTTGAAGGGAACAAATGGGTCTCCTGCTGCAACAGAAAATCAAAATGACTACCATCAGTTTTTGCATCTACTGAGAATATCAGGCGATGGATCAGAAATAAACAGAGGACGCACAGTGTGGAGAAAGAAACCGGCAAGACGATAA

Protein Analysis

378

Amino Acids

42.44

Weight (kDa)

8.41

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-ACP_TE PF01643 93 - 228 7.6e-44 Acyl-ACP thioesterase N-terminal domain
Acyl-ACP_TE_C PF20791 257 - 373 1.2e-28 Acyl-ACP thioesterase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016026)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25110
fragaria_vesca FvH4_2g18600
malus_domestica MD02G1127500.v1.1 MD05G1172000.v1.1
prunus_persica Prupe.8G199400_v2.0.a1
pyrus_communis pycom02g09960 pycom05g15870
rosa_chinensis RchiOBHm_Chr6g0284171
rosa_laevigata RLG00000012762
rosa_multiflora Rmu_sc0003778.1_g000013
rosa_roxburghii Rroxscaffold_7G00184830
rosa_rugosa Rorug06G0161500
rosa_samantha Rh6BG274800 Rh6DG269200
rosa_wichuraiana Rw6G023590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 200, 531
AccII CGCG 1 cut(s) 678
AclWI GGATC 2 cut(s) 764, 1090
AcuI CTGAAG 2 cut(s) 638, 1005
AcyI GRCGYC 1 cut(s) 201
AdeI CACNNNGTG 1 cut(s) 1110
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 43, 61, 210, 438
AflII CTTAAG 1 cut(s) 575
AgsI TTSAA 5 cut(s) 408, 482, 518, 748, 997
AhdI GACNNNNNGTC 1 cut(s) 280
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 2 cut(s) 237, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
Alw26I GTCTC 2 cut(s) 341, 1017
AlwI GGATC 2 cut(s) 764, 1090
AoxI GGCC 4 cut(s) 45, 64, 80, 212
ApaI GGGCCC 2 cut(s) 49, 68
ApeKI GCWGC 2 cut(s) 135, 1019
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 184, 212
AsuC2I CCSGG 4 cut(s) 79, 84, 188, 216
AsuHPI GGTGA 3 cut(s) 637, 838, 907
AvaII GGWCC 2 cut(s) 28, 184
BaeGI GKGCMC 2 cut(s) 49, 68
BanI GGYRCC 2 cut(s) 200, 531
BanII GRGCYC 3 cut(s) 49, 68, 231
BauI CACGAG 2 cut(s) 702, 797
BbsI GAAGAC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 122, 1006
BccI CCATC 4 cut(s) 239, 852, 1053, 1073
BceAI ACGGC 3 cut(s) 55, 179, 292
BcgI CGANNNNNNTGC 2 cut(s) 401, 435
BciT130I CCWGG 2 cut(s) 239, 818
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 4 cut(s) 79, 84, 188, 216
BcoDI GTCTC 2 cut(s) 341, 1017
BfaI CTAG 6 cut(s) 558, 645, 689, 764, 791, 866
BfoI RGCGCY 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 575
BfuI GTATCC 1 cut(s) 564
BisI GCNGC 3 cut(s) 55, 136, 1020
BlsI GCNGC 3 cut(s) 56, 137, 1021
Bme1390I CCNGG 6 cut(s) 79, 84, 188, 216, 239, 818
Bme18I GGWCC 2 cut(s) 28, 184
BmeRI GACNNNNNGTC 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 184, 212
BmiI GGNNCC 6 cut(s) 46, 47, 66, 193, 202, 533
BmrFI CCNGG 6 cut(s) 79, 84, 188, 216, 239, 818
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 4 cut(s) 368, 457, 694, 1066
BmuI ACTGGG 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 2 cut(s) 862, 894
BpmI CTGGAG 1 cut(s) 890
Bpu10I CCTNAGC 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 375, 864
BpuMI CCSGG 4 cut(s) 79, 84, 188, 216
BsaAI YACGTR 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 1017
BsaJI CCNNGG 6 cut(s) 37, 187, 195, 342, 535, 803
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 61, 210, 438
Bse118I RCCGGY 1 cut(s) 1123
Bse1I ACTGG 1 cut(s) 595
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 239, 818
BseDI CCNNGG 6 cut(s) 37, 187, 195, 342, 535, 803
BseGI GGATG 3 cut(s) 330, 383, 863
BseLI CCNNNNNNNGG 4 cut(s) 43, 61, 210, 438
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 242, 791, 1055
BseNI ACTGG 1 cut(s) 595
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 2 cut(s) 49, 68
BseXI GCAGC 2 cut(s) 122, 1006
Bsh1236I CGCG 1 cut(s) 678
BshFI GGCC 4 cut(s) 47, 66, 82, 214
BshNI GGYRCC 2 cut(s) 200, 531
BsiSI CCGG 6 cut(s) 79, 84, 100, 187, 215, 1124
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 4 cut(s) 43, 61, 210, 438
BsmAI GTCTC 2 cut(s) 341, 1017
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 719
BsnI GGCC 4 cut(s) 47, 66, 82, 214
Bso31I GGTCTC 1 cut(s) 1017
Bsp120I GGGCCC 2 cut(s) 45, 64
Bsp1286I GDGCHC 3 cut(s) 49, 68, 231
Bsp143I GATC 2 cut(s) 769, 1082
Bsp68I TCGCGA 1 cut(s) 678
BspANI GGCC 4 cut(s) 47, 66, 82, 214
BspCNI CTCAG 3 cut(s) 243, 790, 1056
BspFNI CGCG 1 cut(s) 678
BspLI GGNNCC 6 cut(s) 46, 47, 66, 193, 202, 533
BspPI GGATC 2 cut(s) 764, 1090
BspQI GCTCTTC 2 cut(s) 601, 675
BspT107I GGYRCC 2 cut(s) 200, 531
BspTI CTTAAG 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 1017
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 1123
BsrI ACTGG 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 1123
BssECI CCNNGG 6 cut(s) 37, 187, 195, 342, 535, 803
BssMI GATC 2 cut(s) 769, 1082
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 2 cut(s) 702, 797
BssT1I CCWWGG 2 cut(s) 535, 803
Bst2BI CACGAG 2 cut(s) 702, 797
Bst2UI CCWGG 2 cut(s) 239, 818
Bst4CI ACNGT 2 cut(s) 343, 1108
Bst6I CTCTTC 2 cut(s) 601, 675
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 68, 469, 473, 875
BstDEI CTNAG 5 cut(s) 251, 710, 777, 919, 1064
BstDSI CCRYGG 3 cut(s) 37, 195, 342
BstF5I GGATG 3 cut(s) 330, 383, 863
BstFNI CGCG 1 cut(s) 678
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 772, 1085
BstMAI GTCTC 2 cut(s) 341, 1017
BstMBI GATC 2 cut(s) 769, 1082
BstMWI GCNNNNNNNGC 2 cut(s) 63, 200
BstNI CCWGG 2 cut(s) 239, 818
BstNSI RCATGY 3 cut(s) 475, 836, 877
BstSCI CCNGG 6 cut(s) 77, 82, 186, 214, 237, 816
BstSLI GKGCMC 2 cut(s) 49, 68
BstSNI TACGTA 1 cut(s) 129
BstUI CGCG 1 cut(s) 678
BstV1I GCAGC 2 cut(s) 122, 1006
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 769
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 4 cut(s) 47, 66, 82, 214
BtgI CCRYGG 3 cut(s) 37, 195, 342
BtgZI GCGATG 1 cut(s) 1092
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 3 cut(s) 330, 383, 863
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 4 cut(s) 462, 588, 670, 1113
BtuMI TCGCGA 1 cut(s) 678
Cac8I GCNNGC 4 cut(s) 68, 469, 473, 875
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 1123
Cfr13I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 184, 212
CpoI CGGWCCG 1 cut(s) 184
CseI GACGC 1 cut(s) 1110
Csp6I GTAC 1 cut(s) 130
CspI CGGWCCG 1 cut(s) 184
CviAII CATG 7 cut(s) 386, 436, 472, 823, 833, 874, 899
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 5 cut(s) 251, 710, 777, 919, 1064
DinI GGCGCC 1 cut(s) 202
DpnI GATC 2 cut(s) 771, 1084
DpnII GATC 2 cut(s) 769, 1082
DraIII CACNNNGTG 1 cut(s) 1110
DriI GACNNNNNGTC 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 601, 675
Eam1105I GACNNNNNGTC 1 cut(s) 280
EarI CTCTTC 2 cut(s) 601, 675
EciI GGCGGA 4 cut(s) 86, 102, 257, 284
Eco105I TACGTA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 535, 803
Eco24I GRGCYC 3 cut(s) 49, 68, 231
Eco31I GGTCTC 1 cut(s) 1017
Eco47I GGWCC 2 cut(s) 28, 184
Eco57I CTGAAG 2 cut(s) 638, 1005
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 237, 816
EcoT14I CCWWGG 2 cut(s) 535, 803
EcoT38I GRGCYC 3 cut(s) 49, 68, 231
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
ErhI CCWWGG 2 cut(s) 535, 803
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 7 cut(s) 389, 439, 475, 826, 836, 877, 902
FaqI GGGAC 1 cut(s) 61
FatI CATG 7 cut(s) 385, 435, 471, 822, 832, 873, 898
FauI CCCGC 2 cut(s) 35, 75
Fnu4HI GCNGC 3 cut(s) 55, 136, 1020
FokI GGATG 3 cut(s) 337, 390, 870
FriOI GRGCYC 3 cut(s) 49, 68, 231
Fsp4HI GCNGC 3 cut(s) 55, 136, 1020
FspBI CTAG 6 cut(s) 558, 645, 689, 764, 791, 866
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 55, 136, 1020
GsuI CTGGAG 1 cut(s) 890
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 4 cut(s) 47, 66, 82, 214
HapII CCGG 6 cut(s) 79, 84, 100, 187, 215, 1124
HgaI GACGC 1 cut(s) 1110
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 7 cut(s) 389, 439, 475, 826, 836, 877, 902
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 941
HindII GTYRAC 1 cut(s) 941
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 795, 959
HpaII CCGG 6 cut(s) 79, 84, 100, 187, 215, 1124
HphI GGTGA 3 cut(s) 637, 838, 907
Hpy166II GTNNAC 2 cut(s) 28, 941
Hpy188I TCNGA 3 cut(s) 184, 657, 1087
Hpy188III TCNNGA 6 cut(s) 307, 677, 786, 866, 881, 907
Hpy8I GTNNAC 2 cut(s) 28, 941
Hpy99I CGWCG 2 cut(s) 157, 416
HpyAV CCTTC 3 cut(s) 126, 536, 991
HpyCH4III ACNGT 2 cut(s) 343, 1108
HpyCH4IV ACGT 3 cut(s) 128, 527, 562
HpyCH4V TGCA 8 cut(s) 18, 367, 381, 422, 448, 475, 1022, 1057
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 200
HpyF3I CTNAG 5 cut(s) 251, 710, 777, 919, 1064
HpySE526I ACGT 3 cut(s) 128, 527, 562
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 7 cut(s) 389, 439, 475, 826, 836, 877, 902
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
Kzo9I GATC 2 cut(s) 769, 1082
LguI GCTCTTC 2 cut(s) 601, 675
LmnI GCTCC 5 cut(s) 115, 191, 261, 309, 703
Lsp1109I GCAGC 2 cut(s) 122, 1006
LweI GCATC 4 cut(s) 368, 457, 694, 1066
MaeI CTAG 6 cut(s) 558, 645, 689, 764, 791, 866
MaeII ACGT 3 cut(s) 128, 527, 562
MaeIII GTNAC 3 cut(s) 124, 460, 844
MalI GATC 2 cut(s) 771, 1084
MboI GATC 2 cut(s) 769, 1082
MboII GAAGA 6 cut(s) 141, 618, 692, 742, 760, 779
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 3 cut(s) 49, 68, 231
MluCI AATT 2 cut(s) 443, 549
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 789
MmeI TCCRAC 2 cut(s) 162, 355
MseI TTAA 2 cut(s) 576, 837
MspA1I CMGCKG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 6 cut(s) 79, 84, 100, 187, 215, 1124
MspR9I CCNGG 6 cut(s) 79, 84, 188, 216, 239, 818
Mva1269I GAATGC 1 cut(s) 719
MvaI CCWGG 2 cut(s) 239, 818
MvnI CGCG 1 cut(s) 678
MwoI GCNNNNNNNGC 2 cut(s) 63, 200
NarI GGCGCC 1 cut(s) 201
NciI CCSGG 4 cut(s) 79, 84, 188, 216
NdeII GATC 2 cut(s) 769, 1082
NlaIII CATG 7 cut(s) 389, 439, 475, 826, 836, 877, 902
NlaIV GGNNCC 6 cut(s) 46, 47, 66, 193, 202, 533
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 460, 844
NruI TCGCGA 1 cut(s) 678
NspI RCATGY 3 cut(s) 475, 836, 877
PaeI GCATGC 2 cut(s) 475, 877
PciSI GCTCTTC 2 cut(s) 601, 675
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 152
PctI GAATGC 1 cut(s) 719
PfeI GAWTC 1 cut(s) 959
PflFI GACNNNGTC 1 cut(s) 953
PkrI GCNGC 3 cut(s) 56, 137, 1021
PleI GAGTC 1 cut(s) 789
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 789
Ppu21I YACGTR 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 237, 816
PspGI CCWGG 2 cut(s) 237, 816
PspN4I GGNNCC 6 cut(s) 46, 47, 66, 193, 202, 533
PspOMI GGGCCC 2 cut(s) 45, 64
PspPI GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 184, 212
PsuI RGATCY 1 cut(s) 769
PsyI GACNNNGTC 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 135
RruI TCGCGA 1 cut(s) 678
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
Rsr2I CGGWCCG 1 cut(s) 184
RsrII CGGWCCG 1 cut(s) 184
SapI GCTCTTC 2 cut(s) 601, 675
SaqAI TTAA 2 cut(s) 576, 837
SatI GCNGC 3 cut(s) 55, 136, 1020
Sau3AI GATC 2 cut(s) 769, 1082
Sau96I GGNCC 8 cut(s) 28, 45, 46, 64, 65, 81, 184, 212
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 6 cut(s) 79, 84, 188, 216, 239, 818
SduI GDGCHC 3 cut(s) 49, 68, 231
SfaNI GCATC 4 cut(s) 368, 457, 694, 1066
SfoI GGCGCC 1 cut(s) 202
SinI GGWCC 2 cut(s) 28, 184
SmlI CTYRAG 3 cut(s) 390, 575, 879
SmoI CTYRAG 3 cut(s) 390, 575, 879
SnaBI TACGTA 1 cut(s) 129
SphI GCATGC 2 cut(s) 475, 877
Sse9I AATT 2 cut(s) 443, 549
SspDI GGCGCC 1 cut(s) 200
SspMI CTAG 6 cut(s) 558, 645, 689, 764, 791, 866
StyD4I CCNGG 6 cut(s) 77, 82, 186, 214, 237, 816
StyI CCWWGG 2 cut(s) 535, 803
TaaI ACNGT 2 cut(s) 343, 1108
TaiI ACGT 3 cut(s) 131, 530, 565
TaqI TCGA 4 cut(s) 119, 155, 225, 957
TasI AATT 2 cut(s) 443, 549
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 959
Tru1I TTAA 2 cut(s) 576, 837
Tru9I TTAA 2 cut(s) 576, 837
TscAI CASTG 4 cut(s) 469, 595, 670, 1113
TseFI GTSAC 2 cut(s) 460, 844
TseI GCWGC 2 cut(s) 135, 1019
Tsp45I GTSAC 2 cut(s) 460, 844
TspDTI ATGAA 5 cut(s) 20, 341, 647, 839, 915
TspRI CASTG 4 cut(s) 469, 595, 670, 1113
Tth111I GACNNNGTC 1 cut(s) 953
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 2 cut(s) 28, 184
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 3 cut(s) 475, 836, 877
XspI CTAG 6 cut(s) 558, 645, 689, 764, 791, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.