Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016026

Physical Location & Seq

Genomic Coordinates Forward (+)

19337640 .. 19340256

Gene Structure 2617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15870.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTTGAGGCTCTCGACGTACAATGGAGTGGACCAAATTCACGGCGTGGCGGCCCAATGCCGCTTCCTTGGCCCACCCAAGCCCAACCCAATATTCCCCCGCCGGAAAGACGGCGCCTTTCTTGCCCACTGCGCTGCCTCACCTTCCAAAACGCCGGTTCTCGCCGTCGTATCGGACCGGGGGCCCGGAAGCGTGGCGGGTCGGGTCGAGACGAATACCGGGCCGGTCACCCTTGCGGACCGGCTGAGGCAGGGGAGCATGGCGGAGGACTGGAAGTCCTATAAGGAGTGCTTTATAGTAAGGTGTTATGAGGTCGGGATTAACAAGACTGCCACCGTCGAGACGATTGCCAATCTCTTGCAGGAGGTAGGATGCAACCATGCTCAAGCTGTTGGCTTTTCTACTGACGGATTTGCGACCACAACCACCATGAGAAAAATGCATCTCATTTGGGTTACTGCTCGCATGCATATTGAAATCTACAAATATCCAGCTTGGAGTGATGTCGTTGAAATAGAAACATGGTGCCAAGGGGAAGGGAGAATTGGCACTAGGCGTGATTGGATACTCAAGGACTATGCCACCGGTGAAGTCATTGGAAGAGCGACGAGCAAGTGGGTGATGATGAACCAAGACACTAGGCGACTTGTGAAAGTCACCGATGATGTTAGGGAAGAGCATTTAGTTTTTGCTCCACGGGAACTGAGATTAGCATTTCCAGAGCCTAACAATAGTAGCTTGAAGAAAATCGCCAAACTTGAAGATCCTGCTCAGTATTCTACACTGGGACTTGTGCCAAGAAGAGCAGATCTCGACATGAACCAGCATGTTAATAATGTCGCCTATATCGGATGGGTTCTAGAGGATGACATAGTCGATTCCCTTACTAGCGTTGAACCTTTAGACGATGCTCCAGCTCTTTCAGGTAACGGAACAAATCGATCCCCTACTGCAACAGAAGATGATAAGGACTACCGTCAGTATTTGCATCTACTAAGATTAGCAGGCGATGGTTCAGAAATAAACCGGGGACGAACTATCTGGAGAGAAAAACCTGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 map00061

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

355

Amino Acids

39.6

Weight (kDa)

7.09

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25110
fragaria_vesca	FvH4_2g18600
malus_domestica	MD02G1127500.v1.1 MD05G1172000.v1.1
prunus_persica	Prupe.8G199400_v2.0.a1
pyrus_communis	pycom02g09960 pycom05g15870
rosa_chinensis	RchiOBHm_Chr6g0284171
rosa_laevigata	RLG00000012762
rosa_multiflora	Rmu_sc0003778.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184830
rosa_rugosa	Rorug06G0161500
rosa_samantha	Rh6BG274800 Rh6DG269200
rosa_wichuraiana	Rw6G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	113, 525
AciI	CCGC	6 cut(s)	50, 61, 100, 197, 236, 263
AclWI	GGATC	2 cut(s)	758, 936
AcsI	RAATTY	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	20
AgeI	ACCGGT	1 cut(s)	584
AgsI	TTSAA	5 cut(s)	476, 512, 742, 761, 896
AhdI	GACNNNNNGTC	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	4 cut(s)	77, 109, 528, 560
AluBI	AGCT	4 cut(s)	389, 494, 738, 917
AluI	AGCT	4 cut(s)	389, 494, 738, 917
Alw26I	GTCTC	2 cut(s)	203, 335
AlwI	GGATC	2 cut(s)	758, 936
AoxI	GGCC	4 cut(s)	51, 70, 182, 221
ApaI	GGGCCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	584
AspLEI	GCGC	2 cut(s)	116, 134
AspS9I	GGNCC	8 cut(s)	31, 52, 71, 175, 182, 183, 221, 238
AsuC2I	CCSGG	4 cut(s)	179, 186, 220, 1028
AsuHPI	GGTGA	5 cut(s)	132, 220, 599, 631, 649
AvaII	GGWCC	3 cut(s)	31, 175, 238
BaeGI	GKGCMC	1 cut(s)	186
BanI	GGYRCC	2 cut(s)	113, 525
BanII	GRGCYC	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	846, 1004
BceAI	ACGGC	3 cut(s)	58, 127, 149
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciVI	GTATCC	1 cut(s)	558
BcnI	CCSGG	4 cut(s)	179, 186, 220, 1028
BcoDI	GTCTC	2 cut(s)	203, 335
BfaI	CTAG	4 cut(s)	552, 639, 860, 888
BfoI	RGCGCY	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	558
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	3 cut(s)	51, 61, 135
BlsI	GCNGC	3 cut(s)	52, 62, 136
Bme1390I	CCNGG	4 cut(s)	179, 186, 220, 1028
Bme18I	GGWCC	3 cut(s)	31, 175, 238
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	8 cut(s)	31, 52, 71, 175, 182, 183, 221, 238
BmiI	GGNNCC	4 cut(s)	115, 183, 184, 527
BmrFI	CCNGG	4 cut(s)	179, 186, 220, 1028
BmrI	ACTGGG	1 cut(s)	794
BmsI	GCATC	4 cut(s)	362, 451, 898, 997
BmuI	ACTGGG	1 cut(s)	794
BoxI	GACNNNNGTC	1 cut(s)	975
BplI	GAGNNNNNCTC	2 cut(s)	795, 827
BpmI	CTGGAG	2 cut(s)	897, 1063
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	369, 554
BpuMI	CCSGG	4 cut(s)	179, 186, 220, 1028
Bsa29I	ATCGAT	1 cut(s)	940
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	5 cut(s)	67, 178, 529, 695, 1027
BsaWI	WCCGGW	1 cut(s)	584
Bse118I	RCCGGY	4 cut(s)	154, 223, 240, 584
Bse1I	ACTGG	2 cut(s)	275, 789
BseCI	ATCGAT	1 cut(s)	940
BseDI	CCNNGG	5 cut(s)	67, 178, 529, 695, 1027
BseGI	GGATG	3 cut(s)	377, 857, 871
BseMII	CTCAG	3 cut(s)	236, 695, 785
BseNI	ACTGG	2 cut(s)	275, 789
BseSI	GKGCMC	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	4 cut(s)	53, 72, 184, 223
BshNI	GGYRCC	2 cut(s)	113, 525
BshTI	ACCGGT	1 cut(s)	584
BshVI	ATCGAT	1 cut(s)	940
BsiSI	CCGG	9 cut(s)	103, 155, 178, 186, 219, 224, 241, 585, 1027
BslFI	GGGAC	2 cut(s)	801, 1044
BsmAI	GTCTC	2 cut(s)	203, 335
BsmBI	CGTCTC	2 cut(s)	203, 335
BsmFI	GGGAC	2 cut(s)	801, 1044
BsnI	GGCC	4 cut(s)	53, 72, 184, 223
Bsp120I	GGGCCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	763, 808, 941
BspACI	CCGC	6 cut(s)	50, 61, 100, 197, 236, 263
BspANI	GGCC	4 cut(s)	53, 72, 184, 223
BspCNI	CTCAG	3 cut(s)	237, 696, 784
BspDI	ATCGAT	1 cut(s)	940
BspLI	GGNNCC	4 cut(s)	115, 183, 184, 527
BspPI	GGATC	2 cut(s)	758, 936
BspQI	GCTCTTC	3 cut(s)	595, 669, 796
BspT107I	GGYRCC	2 cut(s)	113, 525
BsrFI	RCCGGY	4 cut(s)	154, 223, 240, 584
BsrI	ACTGG	2 cut(s)	275, 789
BssAI	RCCGGY	4 cut(s)	154, 223, 240, 584
BssECI	CCNNGG	5 cut(s)	67, 178, 529, 695, 1027
BssMI	GATC	3 cut(s)	763, 808, 941
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	67, 529
Bst4CI	ACNGT	2 cut(s)	337, 977
Bst6I	CTCTTC	3 cut(s)	595, 669, 796
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	463, 467, 1006
BstDEI	CTNAG	4 cut(s)	245, 704, 771, 995
BstDSI	CCRYGG	1 cut(s)	695
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	3 cut(s)	377, 857, 871
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	116, 134
BstKTI	GATC	3 cut(s)	766, 811, 944
BstMAI	GTCTC	2 cut(s)	203, 335
BstMBI	GATC	3 cut(s)	763, 808, 941
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 122, 131
BstNSI	RCATGY	2 cut(s)	469, 830
BstPAI	GACNNNNGTC	1 cut(s)	975
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	4 cut(s)	177, 184, 218, 1026
BstSLI	GKGCMC	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	763, 808
BstYI	RGATCY	2 cut(s)	763, 808
Bsu15I	ATCGAT	1 cut(s)	940
BsuI	GTATCC	1 cut(s)	558
BsuRI	GGCC	4 cut(s)	53, 72, 184, 223
BsuTUI	ATCGAT	1 cut(s)	940
BtgI	CCRYGG	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	3 cut(s)	377, 857, 871
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	127, 782
Cac8I	GCNNGC	3 cut(s)	463, 467, 1006
CfoI	GCGC	2 cut(s)	116, 134
Cfr10I	RCCGGY	4 cut(s)	154, 223, 240, 584
Cfr13I	GGNCC	8 cut(s)	31, 52, 71, 175, 182, 183, 221, 238
ClaI	ATCGAT	1 cut(s)	940
CpoI	CGGWCCG	2 cut(s)	175, 238
Csp6I	GTAC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	584
CspI	CGGWCCG	2 cut(s)	175, 238
CviAII	CATG	7 cut(s)	259, 380, 430, 466, 522, 817, 827
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	4 cut(s)	245, 704, 771, 995
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	3 cut(s)	765, 810, 943
DpnII	GATC	3 cut(s)	763, 808, 941
DraIII	CACNNNGTG	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	3 cut(s)	595, 669, 796
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	3 cut(s)	595, 669, 796
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	67, 529
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	3 cut(s)	31, 175, 238
Eco91I	GGTNACC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	67, 529
EcoT22I	ATGCAT	2 cut(s)	444, 471
EcoT38I	GRGCYC	1 cut(s)	186
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	2 cut(s)	67, 529
Esp3I	CGTCTC	2 cut(s)	203, 335
FaeI	CATG	7 cut(s)	262, 383, 433, 469, 525, 820, 830
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	2 cut(s)	801, 1044
FatI	CATG	7 cut(s)	258, 379, 429, 465, 521, 816, 826
FauI	CCCGC	2 cut(s)	107, 190
Fnu4HI	GCNGC	3 cut(s)	51, 61, 135
FokI	GGATG	3 cut(s)	384, 864, 878
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	51, 61, 135
FspBI	CTAG	4 cut(s)	552, 639, 860, 888
GlaI	GCGC	2 cut(s)	115, 133
GluI	GCNGC	3 cut(s)	51, 61, 135
GsuI	CTGGAG	2 cut(s)	897, 1063
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	53, 72, 184, 223
HapII	CCGG	9 cut(s)	103, 155, 178, 186, 219, 224, 241, 585, 1027
HhaI	GCGC	2 cut(s)	116, 134
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	7 cut(s)	262, 383, 433, 469, 525, 820, 830
Hin6I	GCGC	2 cut(s)	114, 132
HinP1I	GCGC	2 cut(s)	114, 132
HinfI	GANTC	1 cut(s)	878
HpaII	CCGG	9 cut(s)	103, 155, 178, 186, 219, 224, 241, 585, 1027
HphI	GGTGA	5 cut(s)	132, 220, 599, 631, 649
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	175, 851, 1018
Hpy188III	TCNNGA	8 cut(s)	13, 208, 316, 340, 719, 812, 860, 1042
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	4 cut(s)	19, 170, 341, 610
HpyAV	CCTTC	2 cut(s)	153, 530
HpyCH4III	ACNGT	2 cut(s)	337, 977
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	7 cut(s)	361, 375, 442, 469, 953, 988, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 122, 131
HpyF3I	CTNAG	4 cut(s)	245, 704, 771, 995
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	7 cut(s)	262, 383, 433, 469, 525, 820, 830
HspAI	GCGC	2 cut(s)	114, 132
KasI	GGCGCC	1 cut(s)	113
Kzo9I	GATC	3 cut(s)	763, 808, 941
LguI	GCTCTTC	3 cut(s)	595, 669, 796
LmnI	GCTCC	3 cut(s)	255, 697, 916
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	4 cut(s)	362, 451, 898, 997
MaeI	CTAG	4 cut(s)	552, 639, 860, 888
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	4 cut(s)	226, 454, 655, 926
MalI	GATC	3 cut(s)	765, 810, 943
MboI	GATC	3 cut(s)	763, 808, 941
MboII	GAAGA	6 cut(s)	612, 686, 754, 773, 813, 971
MflI	RGATCY	2 cut(s)	763, 808
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	36, 543
Mly113I	GGCGCC	1 cut(s)	114
MnlI	CCTC	6 cut(s)	148, 240, 259, 304, 358, 856
Mph1103I	ATGCAT	2 cut(s)	444, 471
MseI	TTAA	2 cut(s)	321, 831
MspI	CCGG	9 cut(s)	103, 155, 178, 186, 219, 224, 241, 585, 1027
MspR9I	CCNGG	4 cut(s)	179, 186, 220, 1028
MwoI	GCNNNNNNNGC	3 cut(s)	69, 122, 131
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	4 cut(s)	179, 186, 220, 1028
NdeII	GATC	3 cut(s)	763, 808, 941
NlaIII	CATG	7 cut(s)	262, 383, 433, 469, 525, 820, 830
NlaIV	GGNNCC	4 cut(s)	115, 183, 184, 527
NmuCI	GTSAC	2 cut(s)	226, 655
NsiI	ATGCAT	2 cut(s)	444, 471
NspI	RCATGY	2 cut(s)	469, 830
PaeI	GCATGC	1 cut(s)	469
PciSI	GCTCTTC	3 cut(s)	595, 669, 796
PfeI	GAWTC	1 cut(s)	878
PflFI	GACNNNGTC	1 cut(s)	872
PinAI	ACCGGT	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	52, 62, 136
PluTI	GGCGCC	1 cut(s)	117
PshAI	GACNNNNGTC	1 cut(s)	975
PspEI	GGTNACC	1 cut(s)	226
PspN4I	GGNNCC	4 cut(s)	115, 183, 184, 527
PspOMI	GGGCCC	1 cut(s)	182
PspPI	GGNCC	8 cut(s)	31, 52, 71, 175, 182, 183, 221, 238
PsuI	RGATCY	2 cut(s)	763, 808
PsyI	GACNNNGTC	1 cut(s)	872
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
Rsr2I	CGGWCCG	2 cut(s)	175, 238
RsrII	CGGWCCG	2 cut(s)	175, 238
SapI	GCTCTTC	3 cut(s)	595, 669, 796
SaqAI	TTAA	2 cut(s)	321, 831
SatI	GCNGC	3 cut(s)	51, 61, 135
Sau3AI	GATC	3 cut(s)	763, 808, 941
Sau96I	GGNCC	8 cut(s)	31, 52, 71, 175, 182, 183, 221, 238
ScrFI	CCNGG	4 cut(s)	179, 186, 220, 1028
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	4 cut(s)	362, 451, 898, 997
SfoI	GGCGCC	1 cut(s)	115
SgrAI	CRCCGGYG	1 cut(s)	584
SinI	GGWCC	3 cut(s)	31, 175, 238
SmlI	CTYRAG	2 cut(s)	384, 569
SmoI	CTYRAG	2 cut(s)	384, 569
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	2 cut(s)	36, 543
SsiI	CCGC	6 cut(s)	50, 61, 100, 197, 236, 263
SspDI	GGCGCC	1 cut(s)	113
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	4 cut(s)	552, 639, 860, 888
StyD4I	CCNGG	4 cut(s)	177, 184, 218, 1026
StyI	CCWWGG	2 cut(s)	67, 529
TaaI	ACNGT	2 cut(s)	337, 977
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	6 cut(s)	14, 207, 339, 813, 876, 940
TasI	AATT	2 cut(s)	36, 543
TauI	GCSGC	2 cut(s)	53, 63
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	2 cut(s)	321, 831
Tru9I	TTAA	2 cut(s)	321, 831
TscAI	CASTG	2 cut(s)	134, 789
TseFI	GTSAC	2 cut(s)	226, 655
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	226, 655
TspDTI	ATGAA	2 cut(s)	641, 833
TspGWI	ACGGA	2 cut(s)	423, 945
TspRI	CASTG	2 cut(s)	134, 789
Tth111I	GACNNNGTC	1 cut(s)	872
VpaK11BI	GGWCC	3 cut(s)	31, 175, 238
XapI	RAATTY	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	859
XceI	RCATGY	2 cut(s)	469, 830
XspI	CTAG	4 cut(s)	552, 639, 860, 888
Zsp2I	ATGCAT	2 cut(s)	444, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.