Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016026

Physical Location & Seq

Genomic Coordinates Forward (+)

23051881 .. 23053719

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0161500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGTCCAGGAAGCTGAACAATACGATCGACAGAAAATTTCCCTCTGTCATTCCGAGATGATCGAGTCCAAAGTTCAGGTACCCGAGACAAGCAGTGAGTTACCGCTGACATGGACATCCAATTTAAAGGCGTCAATACGTGATAAACTCAGCACAGTGGAAGATACAGAGTACTTGATCGTCCCCTACCCCAATAGAGAGGAAAAAATAAAAGCAGAGTTTTGCATCTATAGAGTTCCGGAGAAACTTCGAAAACTGAAGGAGGATGGCTACAACCCCCGTGTTGTCTCAATTGGACCTTTCCATCGAGATAAGGATAACCTTGCACCAATGTTACAACATAAATTGTCTTACATGGCATCCTTTCTTGATCAATACTATACTTTAGGTGAAGAAGATGATGCTAAATTCACGGAGCAAACTGAAAAATATGCTGATGAATGTTTGGAGGAATGCATCAATACTATTAAGGGTTTTGATAAAGTGATCCGTCAATGCTACATTGAAGAGATCAGTTGCAAAGATTATGAGCTAGCAGAAATGATGTTGATTGATGGCTGCTTCATATTGGAACTTTTCCTCAGGTCTGACCGAAACTTCAATTATATGGAGCCAGGAGATTACGAATCTGATCCGGTAATGAACAGTGCTTGGATTATGGCAGCTCTCAAGCATGATCTGGCTTTGCTTGAAAACCAGATTCCCTTCTTTATTCTCGAAATTTTGTATGACATTATCTGGCCTCGTGTGATGGAAAGGGGTAATTGTAAAGCACCAAAATCGGTTGCTGGTCTTGCTCTAAGCTTCTTCAAGCCTATGAGCCAAAAGTCGGATAAGATACATTTGGGGACAGAGTACAAGCACTTGCTTGATCTCTTACATAACTTCTACTTCCTCCCAGCTGCTGAAGACGGTGGCTTCTCAATCGATGTCAGTGATGTGGAATCAAATCCTCATCCAAGAAAACATAGTTCCGCAGCACGTCAAAGCACTTCAACCCTGTTCAGCAAACTGAGGAGGAAAAAATATAATCCCCGCACGGCTGAAAAAAAATGGGGGTTCAATTATTGTGCTTCCAAACTTTTGGAGTCTGGAATCGAGTTTCAAGTGGAGTCGAGTATCGAGGAAAGTTTGTCGAACATAACTTTCAATCCAAAGGATGGGGTAATCAATATACCCAAACTGTTCATTCATGATGCAACGAGTATTTCACTTTTCAGGAACTTGATTGCTTTCGAGCAATGCAGCCTTAACAGTAAGTACAACGTTGACACTTGTCCTAAGCAAGACTTACAGCCATCAACATTCAGCTTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 map00061

Pfam Domains

Protein Families

Acyl-ACP_TE

Protein Analysis

439

Amino Acids

50.7

Weight (kDa)

5.28

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	76 - 419	9.8e-71	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25110
fragaria_vesca	FvH4_2g18600
malus_domestica	MD02G1127500.v1.1 MD05G1172000.v1.1
prunus_persica	Prupe.8G199400_v2.0.a1
pyrus_communis	pycom02g09960 pycom05g15870
rosa_chinensis	RchiOBHm_Chr6g0284171
rosa_laevigata	RLG00000012762
rosa_multiflora	Rmu_sc0003778.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184830
rosa_rugosa	Rorug06G0161500
rosa_samantha	Rh6BG274800 Rh6DG269200
rosa_wichuraiana	Rw6G023590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	79
AccB7I	CCANNNNNTGG	1 cut(s)	1160
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	3 cut(s)	104, 975, 1036
AclI	AACGTT	1 cut(s)	1266
AclWI	GGATC	2 cut(s)	481, 626
AcsI	RAATTY	3 cut(s)	36, 407, 720
AcuI	CTGAAG	2 cut(s)	278, 927
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	4 cut(s)	81, 173, 857, 1262
AfiI	CCNNNNNNNGG	2 cut(s)	829, 1160
AgsI	TTSAA	8 cut(s)	506, 601, 692, 811, 996, 1063, 1106, 1150
AjiI	CACGTC	1 cut(s)	983
AjnI	CCWGG	2 cut(s)	6, 613
AluBI	AGCT	6 cut(s)	14, 532, 665, 804, 902, 1311
AluI	AGCT	6 cut(s)	14, 532, 665, 804, 902, 1311
Alw26I	GTCTC	2 cut(s)	80, 292
AlwI	GGATC	2 cut(s)	481, 626
AlwNI	CAGNNNCTG	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	5 cut(s)	558, 662, 902, 977, 1245
ApoI	RAATTY	3 cut(s)	36, 407, 720
Asp718I	GGTACC	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	4, 296
AsuHPI	GGTGA	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	250
AsuNHI	GCTAGC	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	4, 296
AxyI	CCTNAGG	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	915
BbvI	GCAGC	5 cut(s)	545, 674, 889, 989, 1257
BccI	CCATC	6 cut(s)	260, 312, 548, 745, 1154, 1306
BceAI	ACGGC	1 cut(s)	1056
BcgI	CGANNNNNNTGC	2 cut(s)	762, 796
BciT130I	CCWGG	2 cut(s)	8, 615
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	80, 292
BfaI	CTAG	1 cut(s)	533
BfmI	CTRYAG	1 cut(s)	229
BisI	GCNGC	5 cut(s)	559, 663, 903, 978, 1246
BlsI	GCNGC	5 cut(s)	560, 664, 904, 979, 1247
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	8, 615
Bme18I	GGWCC	2 cut(s)	4, 296
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	983
BmgT120I	GGNCC	2 cut(s)	4, 296
BmiI	GGNNCC	2 cut(s)	81, 612
BmrFI	CCNGG	2 cut(s)	8, 615
BmsI	GCATC	5 cut(s)	234, 368, 391, 465, 1186
BmtI	GCTAGC	1 cut(s)	536
BoxI	GACNNNNGTC	1 cut(s)	1275
BpiI	GAAGAC	1 cut(s)	915
Bpu10I	CCTNAGC	1 cut(s)	1281
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	653
Bsa29I	ATCGAT	1 cut(s)	927
BsaAI	YACGTR	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	131
BsaWI	WCCGGW	2 cut(s)	238, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	829, 1160
Bse21I	CCTNAGG	1 cut(s)	581
Bse3DI	GCAATG	1 cut(s)	1247
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	8, 615
BseCI	ATCGAT	1 cut(s)	927
BseGI	GGATG	5 cut(s)	116, 271, 359, 955, 1165
BseLI	CCNNNNNNNGG	2 cut(s)	829, 1160
BseMI	GCAATG	1 cut(s)	1247
BseMII	CTCAG	3 cut(s)	163, 595, 1004
BseRI	GAGGAG	1 cut(s)	1030
BseXI	GCAGC	5 cut(s)	545, 674, 889, 989, 1257
BseYI	CCCAGC	1 cut(s)	898
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	742
BshNI	GGYRCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	927
BsiEI	CGRYCG	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	239, 635
BslFI	GGGAC	2 cut(s)	167, 862
BslI	CCNNNNNNNGG	2 cut(s)	829, 1160
BsmAI	GTCTC	2 cut(s)	80, 292
BsmFI	GGGAC	2 cut(s)	167, 862
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	742
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	250
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
BspACI	CCGC	3 cut(s)	104, 975, 1036
BspANI	GGCC	1 cut(s)	742
BspCNI	CTCAG	3 cut(s)	162, 594, 1005
BspDI	ATCGAT	1 cut(s)	927
BspEI	TCCGGA	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	1192
BspLI	GGNNCC	2 cut(s)	81, 612
BspOI	GCTAGC	1 cut(s)	536
BspPI	GGATC	2 cut(s)	481, 626
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	1247
BssMI	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	2 cut(s)	8, 615
Bst4CI	ACNGT	5 cut(s)	157, 647, 914, 1185, 1256
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	5 cut(s)	149, 581, 800, 1013, 1281
BstF5I	GGATG	5 cut(s)	116, 271, 359, 955, 1165
BstKTI	GATC	9 cut(s)	28, 63, 180, 373, 489, 513, 634, 679, 874
BstMAI	GTCTC	2 cut(s)	80, 292
BstMBI	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	2 cut(s)	8, 615
BstPAI	GACNNNNGTC	1 cut(s)	1275
BstSCI	CCNGG	2 cut(s)	6, 613
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	5 cut(s)	545, 674, 889, 989, 1257
BstV2I	GAAGAC	1 cut(s)	915
BstXI	CCANNNNNNTGG	1 cut(s)	1084
Bsu15I	ATCGAT	1 cut(s)	927
Bsu36I	CCTNAGG	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	742
BsuTUI	ATCGAT	1 cut(s)	927
BtrI	CACGTC	1 cut(s)	983
BtsCI	GGATG	5 cut(s)	116, 271, 359, 955, 1165
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	4 cut(s)	100, 162, 652, 940
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	905
CciI	TCATGA	1 cut(s)	1192
Cfr13I	GGNCC	2 cut(s)	4, 296
ClaI	ATCGAT	1 cut(s)	927
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	4 cut(s)	80, 172, 856, 1261
CviAII	CATG	4 cut(s)	111, 355, 674, 1193
CviQI	GTAC	4 cut(s)	80, 172, 856, 1261
DdeI	CTNAG	5 cut(s)	149, 581, 800, 1013, 1281
DpnI	GATC	9 cut(s)	27, 62, 179, 372, 488, 512, 633, 678, 873
DpnII	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
DraI	TTTAAA	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	4, 296
Eco57I	CTGAAG	2 cut(s)	278, 927
Eco81I	CCTNAGG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	6, 613
EcoT22I	ATGCAT	1 cut(s)	458
FaeI	CATG	4 cut(s)	114, 358, 677, 1196
FalI	AAGNNNNNCTT	2 cut(s)	1274, 1306
FaqI	GGGAC	2 cut(s)	167, 862
FatI	CATG	4 cut(s)	110, 354, 673, 1192
FauI	CCCGC	1 cut(s)	1043
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	5 cut(s)	559, 663, 903, 978, 1246
FokI	GGATG	5 cut(s)	103, 278, 346, 942, 1172
Fsp4HI	GCNGC	5 cut(s)	559, 663, 903, 978, 1246
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	5 cut(s)	559, 663, 903, 978, 1246
GsaI	CCCAGC	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	742
HapII	CCGG	2 cut(s)	239, 635
HgaI	GACGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	114, 358, 677, 1196
HincII	GTYRAC	1 cut(s)	1270
HindII	GTYRAC	1 cut(s)	1270
HindIII	AAGCTT	1 cut(s)	802
HinfI	GANTC	7 cut(s)	65, 626, 700, 944, 1088, 1095, 1112
HpaII	CCGG	2 cut(s)	239, 635
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	1 cut(s)	1270
Hpy188I	TCNGA	4 cut(s)	55, 589, 631, 832
Hpy188III	TCNNGA	7 cut(s)	239, 308, 368, 716, 1092, 1193, 1219
Hpy8I	GTNNAC	1 cut(s)	1270
HpyAV	CCTTC	2 cut(s)	253, 715
HpyCH4III	ACNGT	5 cut(s)	157, 647, 914, 1185, 1256
HpyCH4IV	ACGT	3 cut(s)	139, 982, 1266
HpyCH4V	TGCA	6 cut(s)	225, 326, 456, 519, 1199, 1245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	5 cut(s)	149, 581, 800, 1013, 1281
HpySE526I	ACGT	3 cut(s)	139, 982, 1266
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	4 cut(s)	114, 358, 677, 1196
Kpn2I	TCCGGA	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
LmnI	GCTCC	2 cut(s)	415, 610
Lsp1109I	GCAGC	5 cut(s)	545, 674, 889, 989, 1257
LweI	GCATC	5 cut(s)	234, 368, 391, 465, 1186
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	3 cut(s)	139, 982, 1266
MaeIII	GTNAC	2 cut(s)	99, 333
MalI	GATC	9 cut(s)	27, 62, 179, 372, 488, 512, 633, 678, 873
MboI	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
MboII	GAAGA	6 cut(s)	173, 404, 407, 518, 799, 920
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	9 cut(s)	36, 121, 291, 344, 407, 601, 720, 763, 1063
MlyI	GAGTC	3 cut(s)	74, 1097, 1121
MmeI	TCCRAC	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	458
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	4 cut(s)	125, 468, 1251, 1313
MspA1I	CMGCKG	2 cut(s)	106, 902
MspI	CCGG	2 cut(s)	239, 635
MspR9I	CCNGG	2 cut(s)	8, 615
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	2 cut(s)	8, 615
MwoI	GCNNNNNNNGC	1 cut(s)	794
NdeII	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	114, 358, 677, 1196
NlaIV	GGNNCC	2 cut(s)	81, 612
NsiI	ATGCAT	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	250
PagI	TCATGA	1 cut(s)	1192
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	4 cut(s)	626, 700, 944, 1095
PflMI	CCANNNNNTGG	1 cut(s)	1160
PfoI	TCCNGGA	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	560, 664, 904, 979, 1247
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	3 cut(s)	73, 1096, 1120
PpsI	GAGTC	3 cut(s)	73, 1096, 1120
Ppu21I	YACGTR	1 cut(s)	140
PshAI	GACNNNNGTC	1 cut(s)	1275
Psp1406I	AACGTT	1 cut(s)	1266
Psp6I	CCWGG	2 cut(s)	6, 613
PspFI	CCCAGC	1 cut(s)	898
PspGI	CCWGG	2 cut(s)	6, 613
PspN4I	GGNNCC	2 cut(s)	81, 612
PspPI	GGNCC	2 cut(s)	4, 296
PstNI	CAGNNNCTG	1 cut(s)	905
PvuI	CGATCG	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	4 cut(s)	81, 173, 857, 1262
RsaNI	GTAC	4 cut(s)	80, 172, 856, 1261
SaqAI	TTAA	4 cut(s)	125, 468, 1251, 1313
SatI	GCNGC	5 cut(s)	559, 663, 903, 978, 1246
Sau3AI	GATC	9 cut(s)	25, 60, 177, 370, 486, 510, 631, 676, 871
Sau96I	GGNCC	2 cut(s)	4, 296
ScaI	AGTACT	1 cut(s)	173
SchI	GAGTC	3 cut(s)	74, 1097, 1121
ScrFI	CCNGG	2 cut(s)	8, 615
SfaNI	GCATC	5 cut(s)	234, 368, 391, 465, 1186
SfcI	CTRYAG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	250
SinI	GGWCC	2 cut(s)	4, 296
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	9 cut(s)	36, 121, 291, 344, 407, 601, 720, 763, 1063
SsiI	CCGC	3 cut(s)	104, 975, 1036
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	6, 613
TaaI	ACNGT	5 cut(s)	157, 647, 914, 1185, 1256
TaiI	ACGT	3 cut(s)	142, 985, 1269
TaqII	GACCGA	1 cut(s)	606
TasI	AATT	9 cut(s)	36, 121, 291, 344, 407, 601, 720, 763, 1063
TatI	WGTACW	3 cut(s)	171, 855, 1260
TfiI	GAWTC	4 cut(s)	626, 700, 944, 1095
Tru1I	TTAA	4 cut(s)	125, 468, 1251, 1313
Tru9I	TTAA	4 cut(s)	125, 468, 1251, 1313
TscAI	CASTG	4 cut(s)	100, 162, 652, 940
TseI	GCWGC	5 cut(s)	558, 662, 902, 977, 1245
TspDTI	ATGAA	5 cut(s)	453, 553, 656, 1177, 1181
TspGWI	ACGGA	2 cut(s)	428, 479
TspRI	CASTG	4 cut(s)	100, 162, 652, 940
Van91I	CCANNNNNTGG	1 cut(s)	1160
VpaK11BI	GGWCC	2 cut(s)	4, 296
XapI	RAATTY	3 cut(s)	36, 407, 720
XspI	CTAG	1 cut(s)	533
ZrmI	AGTACT	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.