AT3G25180

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
9167138 .. 9169301
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25180.1

Sequence Viewer

Length: 1548 bp
ATGACTTTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGTAATCTTTGGTTACATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGCTCCACGATTCCTGAGCCATTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAAAAAACTCCTTTGCAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCTCAAGTTAGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCACCAACGACTTGGCTACAGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTACAACAATGCAAGTCTGACTCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATTGTCACCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTTCTTCAGAAGTAAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAGTGAAGATTGACATGTTATTTGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGGGGAAGAGGATTGGTTTCGGTGAAGTGAATAGCGATGAATGGCGTTATAAGGAGGCCCTGAAGCATTGCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGATGGTTGGATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTCAGTCAACACCAAGTGGCTCCACGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAAGAACAATCATGGATCTACTGCTAGACATCTTACCAGAGGATATTGTGATAAGTGGACACGTACGCGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCACATCCATCACTTTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAGCAGCACAAGAAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGATATACAAAACCTCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCGGCTCCTCTAACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTGAGAAAGGCACACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGGCCTGACCCCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAGAGCAACTTTGAATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCCGGGAGTCAATCTTGGTCTAAGAGTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAAGTGTCTGATGAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAACCCGGTCGAAGTAGTTGTAATGCCTCGGCTCGACCCGAAGTTGTATAGTTTACTCTAA

Protein Analysis

515

Amino Acids

58.57

Weight (kDa)

9.12

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 495 8.7e-87 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 639
AccB7I CCANNNNNTGG 1 cut(s) 1248
AccII CGCG 2 cut(s) 897, 1152
AciI CCGC 3 cut(s) 974, 1127, 1150
AclWI GGATC 5 cut(s) 831, 852, 949, 1232, 1245
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 3 cut(s) 459, 671, 1479
AcvI CACGTG 1 cut(s) 1160
AdeI CACNNNGTG 3 cut(s) 780, 1304, 1432
AfaI GTAC 6 cut(s) 19, 347, 665, 894, 1088, 1386
AfiI CCNNNNNNNGG 7 cut(s) 146, 277, 342, 686, 707, 1142, 1248
AflIII ACRYGT 3 cut(s) 486, 543, 889
AgsI TTSAA 4 cut(s) 568, 1061, 1322, 1412
AjnI CCWGG 1 cut(s) 1465
AluBI AGCT 6 cut(s) 108, 134, 197, 760, 1001, 1097
AluI AGCT 6 cut(s) 108, 134, 197, 760, 1001, 1097
Alw26I GTCTC 3 cut(s) 36, 384, 739
AlwI GGATC 5 cut(s) 831, 852, 949, 1232, 1245
AoxI GGCC 4 cut(s) 45, 645, 1250, 1463
ApeKI GCWGC 4 cut(s) 197, 982, 1001, 1013
ApoI RAATTY 1 cut(s) 730
ArsI GACNNNNNNTTYG 4 cut(s) 202, 234, 533, 565
Asp700I GAANNNNTTC 1 cut(s) 1326
AspS9I GGNCC 4 cut(s) 46, 218, 646, 1463
AsuC2I CCSGG 2 cut(s) 1359, 1493
AsuHPI GGTGA 4 cut(s) 286, 292, 412, 623
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 578
BamHI GGATCC 1 cut(s) 1237
BbrPI CACGTG 1 cut(s) 1160
BbvI GCAGC 4 cut(s) 184, 969, 988, 1025
BccI CCATC 6 cut(s) 165, 435, 580, 705, 965, 1047
BciT130I CCWGG 1 cut(s) 1467
BciVI GTATCC 1 cut(s) 1175
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 2 cut(s) 1359, 1493
BcoDI GTCTC 3 cut(s) 36, 384, 739
BfaI CTAG 2 cut(s) 854, 1401
BfmI CTRYAG 2 cut(s) 312, 528
BfuI GTATCC 1 cut(s) 1175
BglII AGATCT 1 cut(s) 1245
BisI GCNGC 4 cut(s) 198, 983, 1002, 1014
BlsI GCNGC 4 cut(s) 199, 984, 1003, 1015
BmcAI AGTACT 2 cut(s) 19, 665
Bme1390I CCNGG 3 cut(s) 1359, 1467, 1493
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 4 cut(s) 46, 218, 646, 1463
BmiI GGNNCC 4 cut(s) 381, 785, 1134, 1239
BmrFI CCNGG 3 cut(s) 1359, 1467, 1493
BmsI GCATC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 3 cut(s) 218, 782, 1067
BpuMI CCSGG 2 cut(s) 1359, 1493
BsaAI YACGTR 4 cut(s) 349, 410, 892, 1160
BsaJI CCNNGG 2 cut(s) 701, 1514
BsaXI ACNNNNNCTCC 4 cut(s) 364, 394, 1339, 1369
Bsc4I CCNNNNNNNGG 7 cut(s) 146, 277, 342, 686, 707, 1142, 1248
Bse118I RCCGGY 1 cut(s) 1129
Bse1I ACTGG 2 cut(s) 25, 1452
Bse21I CCTNAGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 1467
BseDI CCNNGG 2 cut(s) 701, 1514
BseGI GGATG 2 cut(s) 716, 953
BseLI CCNNNNNNNGG 7 cut(s) 146, 277, 342, 686, 707, 1142, 1248
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 4 cut(s) 88, 111, 780, 1266
BseNI ACTGG 2 cut(s) 25, 1452
BseRI GAGGAG 1 cut(s) 1125
BseXI GCAGC 4 cut(s) 184, 969, 988, 1025
Bsh1236I CGCG 2 cut(s) 897, 1152
Bsh1285I CGRYCG 1 cut(s) 1497
BshFI GGCC 4 cut(s) 47, 647, 1252, 1465
BsiEI CGRYCG 1 cut(s) 1497
BsiSI CCGG 3 cut(s) 1130, 1358, 1493
BsiWI CGTACG 1 cut(s) 892
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 7 cut(s) 146, 277, 342, 686, 707, 1142, 1248
BsmAI GTCTC 3 cut(s) 36, 384, 739
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 4 cut(s) 47, 647, 1252, 1465
Bsp1407I TGTACA 1 cut(s) 1384
Bsp143I GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 3 cut(s) 974, 1127, 1150
BspANI GGCC 4 cut(s) 47, 647, 1252, 1465
BspCNI CTCAG 4 cut(s) 87, 112, 779, 1267
BspFNI CGCG 2 cut(s) 897, 1152
BspLI GGNNCC 4 cut(s) 381, 785, 1134, 1239
BspPI GGATC 5 cut(s) 831, 852, 949, 1232, 1245
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 1129
BsrGI TGTACA 1 cut(s) 1384
BsrI ACTGG 2 cut(s) 25, 1452
BssAI RCCGGY 1 cut(s) 1129
BssECI CCNNGG 2 cut(s) 701, 1514
BssMI GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 1467
Bst4CI ACNGT 4 cut(s) 280, 424, 446, 1187
Bst6I CTCTTC 5 cut(s) 41, 590, 737, 797, 1017
BstAUI TGTACA 1 cut(s) 1384
BstBAI YACGTR 4 cut(s) 349, 410, 892, 1160
BstC8I GCNNGC 3 cut(s) 265, 1131, 1208
BstDEI CTNAG 6 cut(s) 74, 120, 578, 766, 1275, 1376
BstDSI CCRYGG 1 cut(s) 701
BstENI CCTNNNNNAGG 2 cut(s) 684, 1140
BstF5I GGATG 2 cut(s) 716, 953
BstFNI CGCG 2 cut(s) 897, 1152
BstKTI GATC 7 cut(s) 495, 809, 826, 847, 944, 1240, 1248
BstMAI GTCTC 3 cut(s) 36, 384, 739
BstMBI GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
BstMCI CGRYCG 1 cut(s) 1497
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNI CCWGG 1 cut(s) 1467
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 3 cut(s) 1357, 1465, 1491
BstSFI CTRYAG 2 cut(s) 312, 528
BstSNI TACGTA 2 cut(s) 349, 410
BstUI CGCG 2 cut(s) 897, 1152
BstV1I GCAGC 4 cut(s) 184, 969, 988, 1025
BstX2I RGATCY 3 cut(s) 844, 1237, 1245
BstXI CCANNNNNNTGG 2 cut(s) 215, 307
BstYI RGATCY 3 cut(s) 844, 1237, 1245
Bsu36I CCTNAGG 1 cut(s) 578
BsuI GTATCC 1 cut(s) 1175
BsuRI GGCC 4 cut(s) 47, 647, 1252, 1465
BtgI CCRYGG 1 cut(s) 701
BtgZI GCGATG 2 cut(s) 639, 912
BtsCI GGATG 2 cut(s) 716, 953
BtsIMutI CAGTG 1 cut(s) 1445
Cac8I GCNNGC 3 cut(s) 265, 1131, 1208
Cfr10I RCCGGY 1 cut(s) 1129
Cfr13I GGNCC 4 cut(s) 46, 218, 646, 1463
Csp6I GTAC 6 cut(s) 18, 346, 664, 893, 1087, 1385
CviAII CATG 7 cut(s) 202, 215, 544, 702, 841, 969, 1285
CviQI GTAC 6 cut(s) 18, 346, 664, 893, 1087, 1385
DdeI CTNAG 6 cut(s) 74, 120, 578, 766, 1275, 1376
DpnI GATC 7 cut(s) 494, 808, 825, 846, 943, 1239, 1247
DpnII GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
DraIII CACNNNGTG 3 cut(s) 780, 1304, 1432
Eam1104I CTCTTC 5 cut(s) 41, 590, 737, 797, 1017
EarI CTCTTC 5 cut(s) 41, 590, 737, 797, 1017
Eco105I TACGTA 2 cut(s) 349, 410
Eco130I CCWWGG 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 3 cut(s) 459, 671, 1479
Eco72I CACGTG 1 cut(s) 1160
Eco81I CCTNAGG 1 cut(s) 578
EcoNI CCTNNNNNAGG 2 cut(s) 684, 1140
EcoO109I RGGNCCY 2 cut(s) 646, 1463
EcoRII CCWGG 1 cut(s) 1465
EcoT14I CCWWGG 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 7 cut(s) 205, 218, 547, 705, 844, 972, 1288
FalI AAGNNNNNCTT 2 cut(s) 1301, 1333
FaqI GGGAC 1 cut(s) 190
FatI CATG 7 cut(s) 201, 214, 543, 701, 840, 968, 1284
FauI CCCGC 1 cut(s) 1134
FauNDI CATATG 1 cut(s) 1220
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 4 cut(s) 198, 983, 1002, 1014
FokI GGATG 2 cut(s) 723, 940
Fsp4HI GCNGC 4 cut(s) 198, 983, 1002, 1014
FspBI CTAG 2 cut(s) 854, 1401
GluI GCNGC 4 cut(s) 198, 983, 1002, 1014
GsuI CTGGAG 1 cut(s) 8
HaeIII GGCC 4 cut(s) 47, 647, 1252, 1465
HapII CCGG 3 cut(s) 1130, 1358, 1493
Hin1II CATG 7 cut(s) 205, 218, 547, 705, 844, 972, 1288
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 7 cut(s) 115, 373, 676, 764, 1064, 1146, 1362
HpaII CCGG 3 cut(s) 1130, 1358, 1493
HphI GGTGA 4 cut(s) 286, 292, 412, 623
Hpy166II GTNNAC 6 cut(s) 484, 772, 887, 1216, 1387, 1541
Hpy188I TCNGA 7 cut(s) 77, 149, 372, 478, 946, 1069, 1438
Hpy188III TCNNGA 5 cut(s) 119, 799, 810, 827, 1341
Hpy8I GTNNAC 6 cut(s) 484, 772, 887, 1216, 1387, 1541
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 5 cut(s) 574, 814, 904, 1338, 1454
HpyCH4III ACNGT 4 cut(s) 280, 424, 446, 1187
HpyCH4IV ACGT 6 cut(s) 348, 409, 488, 693, 891, 1159
HpyCH4V TGCA 3 cut(s) 186, 365, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 6 cut(s) 74, 120, 578, 766, 1275, 1376
HpySE526I ACGT 6 cut(s) 348, 409, 488, 693, 891, 1159
Hsp92II CATG 7 cut(s) 205, 218, 547, 705, 844, 972, 1288
KroI GCCGGC 1 cut(s) 1129
KroNI GCCGGC 1 cut(s) 1131
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
LmnI GCTCC 6 cut(s) 113, 131, 385, 757, 789, 1138
Lsp1109I GCAGC 4 cut(s) 184, 969, 988, 1025
LweI GCATC 1 cut(s) 444
MaeI CTAG 2 cut(s) 854, 1401
MaeII ACGT 6 cut(s) 348, 409, 488, 693, 891, 1159
MaeIII GTNAC 5 cut(s) 62, 405, 418, 461, 1422
MalI GATC 7 cut(s) 494, 808, 825, 846, 943, 1239, 1247
MboI GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 3 cut(s) 844, 1237, 1245
MluCI AATT 4 cut(s) 83, 191, 730, 918
MlyI GAGTC 3 cut(s) 367, 758, 1371
MmeI TCCRAC 1 cut(s) 696
MroNI GCCGGC 1 cut(s) 1129
MroXI GAANNNNTTC 1 cut(s) 1326
MseI TTAA 5 cut(s) 753, 935, 1104, 1269, 1488
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 3 cut(s) 1130, 1358, 1493
MspR9I CCNGG 3 cut(s) 1359, 1467, 1493
MunI CAATTG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 1467
MvnI CGCG 2 cut(s) 897, 1152
MwoI GCNNNNNNNGC 1 cut(s) 1010
NaeI GCCGGC 1 cut(s) 1131
NciI CCSGG 2 cut(s) 1359, 1493
NcoI CCATGG 1 cut(s) 701
NdeI CATATG 1 cut(s) 1220
NdeII GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
NgoMIV GCCGGC 1 cut(s) 1129
NlaIII CATG 7 cut(s) 205, 218, 547, 705, 844, 972, 1288
NlaIV GGNNCC 4 cut(s) 381, 785, 1134, 1239
NmeAIII GCCGAG 1 cut(s) 1495
NmuCI GTSAC 2 cut(s) 418, 461
NspI RCATGY 1 cut(s) 547
PciI ACATGT 1 cut(s) 543
PdiI GCCGGC 1 cut(s) 1131
PdmI GAANNNNTTC 1 cut(s) 1326
PfeI GAWTC 4 cut(s) 115, 676, 1064, 1146
Pfl23II CGTACG 1 cut(s) 892
PflFI GACNNNGTC 1 cut(s) 767
PflMI CCANNNNNTGG 1 cut(s) 1248
PfoI TCCNGGA 1 cut(s) 1357
PkrI GCNGC 4 cut(s) 199, 984, 1003, 1015
PleI GAGTC 3 cut(s) 367, 758, 1370
PmaCI CACGTG 1 cut(s) 1160
PmlI CACGTG 1 cut(s) 1160
PpsI GAGTC 3 cut(s) 367, 758, 1370
Ppu21I YACGTR 4 cut(s) 349, 410, 892, 1160
PscI ACATGT 1 cut(s) 543
PsiI TTATAA 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 1465
PspCI CACGTG 1 cut(s) 1160
PspGI CCWGG 1 cut(s) 1465
PspLI CGTACG 1 cut(s) 892
PspN4I GGNNCC 4 cut(s) 381, 785, 1134, 1239
PspPI GGNCC 4 cut(s) 46, 218, 646, 1463
PsuI RGATCY 3 cut(s) 844, 1237, 1245
PsyI GACNNNGTC 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 6 cut(s) 19, 347, 665, 894, 1088, 1386
RsaNI GTAC 6 cut(s) 18, 346, 664, 893, 1087, 1385
SaqAI TTAA 5 cut(s) 753, 935, 1104, 1269, 1488
SatI GCNGC 4 cut(s) 198, 983, 1002, 1014
Sau3AI GATC 7 cut(s) 492, 806, 823, 844, 941, 1237, 1245
Sau96I GGNCC 4 cut(s) 46, 218, 646, 1463
ScaI AGTACT 2 cut(s) 19, 665
SchI GAGTC 3 cut(s) 367, 758, 1371
ScrFI CCNGG 3 cut(s) 1359, 1467, 1493
SfaNI GCATC 1 cut(s) 444
SfcI CTRYAG 2 cut(s) 312, 528
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 3 cut(s) 233, 797, 1082
SmoI CTYRAG 3 cut(s) 233, 797, 1082
SnaBI TACGTA 2 cut(s) 349, 410
Sse9I AATT 4 cut(s) 83, 191, 730, 918
SsiI CCGC 3 cut(s) 974, 1127, 1150
SspMI CTAG 2 cut(s) 854, 1401
StyD4I CCNGG 3 cut(s) 1357, 1465, 1491
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 4 cut(s) 280, 424, 446, 1187
TaiI ACGT 6 cut(s) 351, 412, 491, 696, 894, 1162
TaqI TCGA 2 cut(s) 1497, 1521
TasI AATT 4 cut(s) 83, 191, 730, 918
TatI WGTACW 3 cut(s) 17, 663, 1384
TfiI GAWTC 4 cut(s) 115, 676, 1064, 1146
Tru1I TTAA 5 cut(s) 753, 935, 1104, 1269, 1488
Tru9I TTAA 5 cut(s) 753, 935, 1104, 1269, 1488
TscAI CASTG 1 cut(s) 1452
TseFI GTSAC 2 cut(s) 418, 461
TseI GCWGC 4 cut(s) 197, 982, 1001, 1013
Tsp45I GTSAC 2 cut(s) 418, 461
TspDTI ATGAA 5 cut(s) 642, 755, 1220, 1273, 1455
TspRI CASTG 1 cut(s) 1452
Tth111I GACNNNGTC 1 cut(s) 767
Van91I CCANNNNNTGG 1 cut(s) 1248
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 2 cut(s) 684, 1140
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 547
XcmI CCANNNNNNNNNTGG 3 cut(s) 164, 304, 708
XmnI GAANNNNTTC 1 cut(s) 1326
XspI CTAG 2 cut(s) 854, 1401
ZrmI AGTACT 2 cut(s) 19, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.