Rh6CG272900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006975
Physical Location & Seq
Reverse (-)
44831947 .. 44833625
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG272900.1

Sequence Viewer

Length: 996 bp
ATGAACCTGAGGCTGATCGCCGGGAAGAGATTTTCCAGTGACCAGTATCACGAGGAGAACAGTACGGCCTGGCGATTCGAAAGAGCAACGAAAGAAGCTTTGTATCTGTTCGGAGTTTTTGTTTGGTCCGATGCAGTGCCATTTCTCGAGTGGCTTGACATAGGTGGGCATGTGAGTGCCATGAAACGATGTTTCAAGGAATTGGACTCTGTGCTTGGGGAGTGGCTTGAAGAGCATAGGCAAAGAAAATCATCGGAAGGCAAGAATGGTACGGTTGAAAGTGACTTGATGGATGCGATGATATCCAACTTTGAAGAGGAGGATGAAATAGCTGGCCATAGCCGTGATACTGTCATCAAAGCGACGGCACTGGTTCTAATCCTAACCGGTAGTGAAAGCACAGCTATTACCCTAACATGGGTACTCTCTTTGCTCCTGAACAACCCAAGAGTCTTAAAAGCGGCTCAAGAAGAGTTGGACCACCATGTAGGAAGAGACAGATGGGTGCAAGAATCAGACATCAAGAACCTCAAATACCTCCAAGCCATCGTGAAAGAAACGTTACGCATAAATCCACCAGGTCCCATAACAGGTCTCCGTGAGGCCACAGAGGACTGTTTTGTCGGTGGCTATTACGTCCCCAAGGGCACTCGTTTACTCGTCAACATATGGAAGCTACAGCGGGACCCCCTCATGTGGTCGGACCCCTGCGAGTTCCGACCAGAAAGGTTCATGACGGAAAATGCTGACATGGATTTCAGAGGCCAAAGTTTTGAGTATATTCCGTTCAGTGCAGGTAGAAGGTCGTGTCCGGGCATGACGCTTGGTTTGCATGTGGTTCATTTAGTTCTGGCTCGTTTGGTTCAGGGATTTGATATGAAGAGAGAAGGTGATGAGCTAGTGGATATGCGTGCAGGGTTGGGTCTTGCTTTGCCTAAGGCAACTCCACTTGAAGCCGTTCTTGCTCCCCGGCTTCCTGTAGAGCTCTACTATTGA

Protein Analysis

331

Amino Acids

37.66

Weight (kDa)

5.41

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 19 - 313 6.6e-69 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 785
AciI CCGC 2 cut(s) 461, 682
AclI AACGTT 1 cut(s) 560
AcoI YGGCCR 1 cut(s) 334
AfaI GTAC 3 cut(s) 64, 271, 423
AfiI CCNNNNNNNGG 4 cut(s) 417, 418, 590, 696
AgeI ACCGGT 1 cut(s) 386
AgsI TTSAA 5 cut(s) 196, 230, 278, 314, 953
AjnI CCWGG 2 cut(s) 68, 577
AluBI AGCT 6 cut(s) 98, 332, 404, 676, 898, 985
AluI AGCT 6 cut(s) 98, 332, 404, 676, 898, 985
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 2 cut(s) 489, 599
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 4 cut(s) 66, 334, 603, 763
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
AsiGI ACCGGT 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 957
AspS9I GGNCC 5 cut(s) 126, 478, 581, 685, 703
AsuC2I CCSGG 3 cut(s) 22, 813, 970
AsuHPI GGTGA 1 cut(s) 902
AsuII TTCGAA 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 5 cut(s) 126, 478, 581, 685, 703
AxyI CCTNAGG 2 cut(s) 8, 936
BaeGI GKGCMC 1 cut(s) 650
BalI TGGCCA 1 cut(s) 336
BanII GRGCYC 1 cut(s) 987
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 987
BccI CCATC 3 cut(s) 283, 495, 554
BceAI ACGGC 4 cut(s) 81, 327, 381, 941
BciT130I CCWGG 2 cut(s) 70, 579
BcnI CCSGG 3 cut(s) 22, 813, 970
BcoDI GTCTC 2 cut(s) 489, 599
BfaI CTAG 1 cut(s) 899
BfmI CTRYAG 2 cut(s) 677, 978
BfuAI ACCTGC 1 cut(s) 785
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 5 cut(s) 22, 70, 579, 813, 970
Bme18I GGWCC 5 cut(s) 126, 478, 581, 685, 703
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 5 cut(s) 126, 478, 581, 685, 703
BmiI GGNNCC 4 cut(s) 583, 686, 687, 705
BmrFI CCNGG 5 cut(s) 22, 70, 579, 813, 970
BmsI GCATC 2 cut(s) 121, 283
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 3 cut(s) 22, 813, 970
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 2 cut(s) 642, 968
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 4 cut(s) 417, 418, 590, 696
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 3 cut(s) 36, 43, 375
Bse21I CCTNAGG 2 cut(s) 8, 936
BseBI CCWGG 2 cut(s) 70, 579
BseDI CCNNGG 2 cut(s) 642, 968
BseGI GGATG 2 cut(s) 298, 328
BseLI CCNNNNNNNGG 4 cut(s) 417, 418, 590, 696
BseNI ACTGG 3 cut(s) 36, 43, 375
BseRI GAGGAG 2 cut(s) 68, 332
BseSI GKGCMC 1 cut(s) 650
BsgI GTGCAG 2 cut(s) 813, 933
BshFI GGCC 4 cut(s) 68, 336, 605, 765
BshTI ACCGGT 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 4 cut(s) 21, 387, 812, 970
BslFI GGGAC 3 cut(s) 567, 623, 698
BslI CCNNNNNNNGG 4 cut(s) 417, 418, 590, 696
BsmAI GTCTC 2 cut(s) 489, 599
BsmFI GGGAC 3 cut(s) 567, 623, 698
BsnI GGCC 4 cut(s) 68, 336, 605, 765
Bso31I GGTCTC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 146
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 650, 987
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 2 cut(s) 461, 682
BspANI GGCC 4 cut(s) 68, 336, 605, 765
BspHI TCATGA 1 cut(s) 732
BspLI GGNNCC 4 cut(s) 583, 686, 687, 705
BspMI ACCTGC 1 cut(s) 785
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 3 cut(s) 36, 43, 375
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 642, 968
BssMI GATC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 70, 579
Bst4CI ACNGT 4 cut(s) 62, 274, 352, 617
Bst6I CTCTTC 6 cut(s) 20, 225, 309, 465, 487, 875
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 334, 912
BstDEI CTNAG 2 cut(s) 8, 936
BstF5I GGATG 2 cut(s) 298, 328
BstKTI GATC 1 cut(s) 18
BstMAI GTCTC 2 cut(s) 489, 599
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 232, 829, 962
BstNI CCWGG 2 cut(s) 70, 579
BstNSI RCATGY 2 cut(s) 173, 836
BstSCI CCNGG 5 cut(s) 20, 68, 577, 811, 968
BstSFI CTRYAG 2 cut(s) 677, 978
BstSLI GKGCMC 1 cut(s) 650
Bsu36I CCTNAGG 2 cut(s) 8, 936
BsuRI GGCC 4 cut(s) 68, 336, 605, 765
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 2 cut(s) 298, 328
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 4 cut(s) 43, 141, 368, 796
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 2 cut(s) 334, 912
CciI TCATGA 1 cut(s) 732
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 5 cut(s) 126, 478, 581, 685, 703
CseI GACGC 1 cut(s) 829
CsiI ACCWGGT 1 cut(s) 577
Csp6I GTAC 3 cut(s) 63, 270, 422
CspAI ACCGGT 1 cut(s) 386
CviAII CATG 9 cut(s) 170, 181, 417, 485, 694, 733, 751, 817, 833
CviQI GTAC 3 cut(s) 63, 270, 422
DdeI CTNAG 2 cut(s) 8, 936
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 6 cut(s) 20, 225, 309, 465, 487, 875
EarI CTCTTC 6 cut(s) 20, 225, 309, 465, 487, 875
Ecl136II GAGCTC 1 cut(s) 985
Eco130I CCWWGG 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 987
Eco31I GGTCTC 1 cut(s) 599
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 5 cut(s) 126, 478, 581, 685, 703
Eco53kI GAGCTC 1 cut(s) 985
Eco81I CCTNAGG 2 cut(s) 8, 936
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 985
EcoO109I RGGNCCY 2 cut(s) 581, 685
EcoRII CCWGG 2 cut(s) 68, 577
EcoRV GATATC 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 987
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 9 cut(s) 173, 184, 420, 488, 697, 736, 754, 820, 836
FalI AAGNNNNNCTT 2 cut(s) 945, 977
FaqI GGGAC 3 cut(s) 567, 623, 698
FatI CATG 9 cut(s) 169, 180, 416, 484, 693, 732, 750, 816, 832
FauI CCCGC 1 cut(s) 675
FauNDI CATATG 1 cut(s) 668
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 2 cut(s) 305, 335
FriOI GRGCYC 1 cut(s) 987
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 1 cut(s) 899
GluI GCNGC 1 cut(s) 462
HaeIII GGCC 4 cut(s) 68, 336, 605, 765
HapII CCGG 4 cut(s) 21, 387, 812, 970
HgaI GACGC 1 cut(s) 829
Hin1II CATG 9 cut(s) 173, 184, 420, 488, 697, 736, 754, 820, 836
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 96
HinfI GANTC 4 cut(s) 75, 206, 450, 512
HpaII CCGG 4 cut(s) 21, 387, 812, 970
HphI GGTGA 1 cut(s) 902
Hpy166II GTNNAC 2 cut(s) 656, 664
Hpy188I TCNGA 7 cut(s) 113, 130, 256, 517, 703, 719, 761
Hpy188III TCNNGA 7 cut(s) 50, 146, 436, 467, 523, 550, 733
Hpy8I GTNNAC 2 cut(s) 656, 664
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 3 cut(s) 251, 795, 881
HpyCH4III ACNGT 4 cut(s) 62, 274, 352, 617
HpyCH4IV ACGT 2 cut(s) 560, 636
HpyCH4V TGCA 5 cut(s) 134, 508, 794, 832, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 829, 962
HpyF3I CTNAG 2 cut(s) 8, 936
HpySE526I ACGT 2 cut(s) 560, 636
Hsp92II CATG 9 cut(s) 173, 184, 420, 488, 697, 736, 754, 820, 836
KflI GGGWCCC 1 cut(s) 685
Kzo9I GATC 1 cut(s) 15
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 438, 970
LweI GCATC 2 cut(s) 121, 283
MabI ACCWGGT 1 cut(s) 577
MaeI CTAG 1 cut(s) 899
MaeII ACGT 2 cut(s) 560, 636
MaeIII GTNAC 3 cut(s) 38, 281, 561
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MboII GAAGA 6 cut(s) 37, 242, 326, 482, 504, 892
MhlI GDGCHC 2 cut(s) 650, 987
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 2 cut(s) 200, 459
MmeI TCCRAC 4 cut(s) 330, 456, 681, 742
Mox20I TGGCCA 1 cut(s) 336
MroXI GAANNNNTTC 1 cut(s) 957
MscI TGGCCA 1 cut(s) 336
MseI TTAA 1 cut(s) 455
MslI CAYNNNNRTG 2 cut(s) 174, 342
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 682
MspI CCGG 4 cut(s) 21, 387, 812, 970
MspR9I CCNGG 5 cut(s) 22, 70, 579, 813, 970
MvaI CCWGG 2 cut(s) 70, 579
MwoI GCNNNNNNNGC 3 cut(s) 232, 829, 962
NciI CCSGG 3 cut(s) 22, 813, 970
NdeI CATATG 1 cut(s) 668
NdeII GATC 1 cut(s) 15
NlaIII CATG 9 cut(s) 173, 184, 420, 488, 697, 736, 754, 820, 836
NlaIV GGNNCC 4 cut(s) 583, 686, 687, 705
NmuCI GTSAC 2 cut(s) 38, 281
NspI RCATGY 2 cut(s) 173, 836
NspV TTCGAA 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 146
PagI TCATGA 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 2 cut(s) 75, 512
PinAI ACCGGT 1 cut(s) 386
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 2 cut(s) 200, 458
PpsI GAGTC 2 cut(s) 200, 458
PpuMI RGGWCCY 2 cut(s) 581, 685
Psp124BI GAGCTC 1 cut(s) 987
Psp1406I AACGTT 1 cut(s) 560
Psp5II RGGWCCY 2 cut(s) 581, 685
Psp6I CCWGG 2 cut(s) 68, 577
PspGI CCWGG 2 cut(s) 68, 577
PspN4I GGNNCC 4 cut(s) 583, 686, 687, 705
PspPI GGNCC 5 cut(s) 126, 478, 581, 685, 703
PspPPI RGGWCCY 2 cut(s) 581, 685
PsrI GAACNNNNNNTAC 4 cut(s) 518, 550, 770, 802
RsaI GTAC 3 cut(s) 64, 271, 423
RsaNI GTAC 3 cut(s) 63, 270, 422
RseI CAYNNNNRTG 2 cut(s) 174, 342
SacI GAGCTC 1 cut(s) 987
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 455
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 1 cut(s) 15
Sau96I GGNCC 5 cut(s) 126, 478, 581, 685, 703
SchI GAGTC 2 cut(s) 200, 459
ScrFI CCNGG 5 cut(s) 22, 70, 579, 813, 970
SduI GDGCHC 2 cut(s) 650, 987
SexAI ACCWGGT 1 cut(s) 577
SfaNI GCATC 2 cut(s) 121, 283
SfcI CTRYAG 2 cut(s) 677, 978
Sfr274I CTCGAG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 5 cut(s) 126, 478, 581, 685, 703
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 174, 342
SmlI CTYRAG 2 cut(s) 146, 465
SmoI CTYRAG 2 cut(s) 146, 465
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 461, 682
SspMI CTAG 1 cut(s) 899
SstI GAGCTC 1 cut(s) 987
StyD4I CCNGG 5 cut(s) 20, 68, 577, 811, 968
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 4 cut(s) 62, 274, 352, 617
TaiI ACGT 2 cut(s) 563, 639
TaqI TCGA 2 cut(s) 78, 147
TasI AATT 1 cut(s) 200
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 2 cut(s) 75, 512
Tru1I TTAA 1 cut(s) 455
Tru9I TTAA 1 cut(s) 455
TscAI CASTG 4 cut(s) 43, 141, 375, 796
TseFI GTSAC 2 cut(s) 38, 281
Tsp45I GTSAC 2 cut(s) 38, 281
TspDTI ATGAA 6 cut(s) 17, 197, 339, 721, 830, 893
TspGWI ACGGA 3 cut(s) 587, 752, 774
TspRI CASTG 4 cut(s) 43, 141, 375, 796
VpaK11BI GGWCC 5 cut(s) 126, 478, 581, 685, 703
XceI RCATGY 2 cut(s) 173, 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 1 cut(s) 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.