Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006975

Physical Location & Seq

Genomic Coordinates Reverse (-)

17136363 .. 17137153

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCCCTTAATAGGTCACCTCCCTCTGCATTTATACTCGGAGCCATGGCTGATCAACACGGACCCATCTACTCCACGAAGCTTGGCCAGCACGAACTGCTTGTTCTCAGCGCTTGGGAACAAGTCCAGGAATTGTTCACAAAAAATGACAGAGTTTTTGCCACCCGGCCGAATACAGCCGTTGGCAGGTACTTGGGCTATGACAACGCCGTCTTCGCCTTTGCTCCGTACGGAGACTACTGGCGTAACGTTCGTAAAATGGCCACCATGGAGCTTCTCTCGAATTTGACGACTGACCAGTATAATGAGAAGCACGGGGACGTTTGGCGTTTTGAGAAGGCGGTAAAAGAGACTTTGTATCTCTTTGGTGTTTTTGTCTGGTCAGATGCTATGCCATGTTTTGAGTGGTTGGACGGTTTGTCTGGTCACGTGAGTTCCATAAAGAAATGTTTTAAGGAACTGGACTACGTACTTGGGAAATGGCTTGAAGAACATCGACAAAGGAGATTGGAAAGCAAGAATAATAGGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042214 GO:0042221 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044550 GO:0046246 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071704 GO:0097007 GO:0097008 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

p450

Protein Analysis

178

Amino Acids

20.56

Weight (kDa)

7.78

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25180
malus_domestica	MD05G1169600.v1.1 MD05G1189900.v1.1 MD10G1157900.v1.1 MD10G1158100.v1.1 MD10G1176900.v1.1 MD10G1177100.v1.1
prunus_persica	Prupe.8G196800_v2.0.a1 Prupe.8G196900_v2.0.a1 Prupe.8G197000_v2.0.a1
pyrus_communis	pycom05g15710 pycom05g17500 pycom10g13610 pycom10g13620 pycom10g13630 pycom10g13660 pycom10g13670 pycom10g15440
rosa_chinensis	RchiOBHm_Chr6g0283821
rosa_laevigata	RLG00000012794
rosa_multiflora	Rmu_sc0001521.1_g000036
rosa_roxburghii	Rroxscaffold_7G00185160
rosa_rugosa	Rorug06G0158000
rosa_samantha	Rh6CG272900
rosa_wichuraiana	Rw6G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	177
AciI	CCGC	1 cut(s)	341
AclI	AACGTT	1 cut(s)	249
AcoI	YGGCCR	3 cut(s)	85, 167, 261
AcsI	RAATTY	1 cut(s)	283
AcvI	CACGTG	1 cut(s)	430
AfaI	GTAC	3 cut(s)	191, 230, 471
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	12, 186
AgsI	TTSAA	1 cut(s)	488
AhdI	GACNNNNNGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	82, 274
AluI	AGCT	2 cut(s)	82, 274
Alw26I	GTCTC	2 cut(s)	228, 344
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	5 cut(s)	3, 85, 167, 261, 527
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	4, 62
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	2 cut(s)	87, 263
BbrPI	CACGTG	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	205
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	3 cut(s)	164, 194, 514
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	228, 344
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	128, 166
Bme18I	GGWCC	1 cut(s)	62
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmgT120I	GGNCC	2 cut(s)	4, 62
BmiI	GGNNCC	2 cut(s)	43, 64
BmrFI	CCNGG	2 cut(s)	128, 166
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpuMI	CCSGG	1 cut(s)	166
BsaAI	YACGTR	2 cut(s)	430, 469
BsaJI	CCNNGG	2 cut(s)	45, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 186
Bse1I	ACTGG	3 cut(s)	245, 298, 465
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	45, 267
BseLI	CCNNNNNNNGG	2 cut(s)	12, 186
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	3 cut(s)	245, 298, 465
BseX3I	CGGCCG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	5 cut(s)	5, 87, 169, 263, 529
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	166
BsiWI	CGTACG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	12, 186
BsmAI	GTCTC	2 cut(s)	228, 344
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	5 cut(s)	5, 87, 169, 263, 529
Bsp143I	GATC	1 cut(s)	52
Bsp19I	CCATGG	2 cut(s)	45, 267
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	5 cut(s)	5, 87, 169, 263, 529
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	43, 64
BspMI	ACCTGC	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	245, 298, 465
BssECI	CCNNGG	2 cut(s)	45, 267
BssMI	GATC	1 cut(s)	52
BssT1I	CCWWGG	2 cut(s)	45, 267
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstBAI	YACGTR	2 cut(s)	430, 469
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	2 cut(s)	45, 267
BstEII	GGTNACC	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	228, 344
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 97, 215
BstNI	CCWGG	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	126, 164
BstSNI	TACGTA	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	167
BsuRI	GGCC	5 cut(s)	5, 87, 169, 263, 529
BtgI	CCRYGG	2 cut(s)	45, 267
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	4, 62
Csp6I	GTAC	3 cut(s)	190, 229, 470
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	3 cut(s)	46, 268, 396
CviQI	GTAC	3 cut(s)	190, 229, 470
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DrdI	GACNNNNNNGTC	1 cut(s)	209
DriI	GACNNNNNGTC	1 cut(s)	418
DseDI	GACNNNNNNGTC	1 cut(s)	209
EaeI	YGGCCR	3 cut(s)	85, 167, 261
EagI	CGGCCG	1 cut(s)	167
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EclXI	CGGCCG	1 cut(s)	167
Eco105I	TACGTA	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	45, 267
Eco47I	GGWCC	1 cut(s)	62
Eco47III	AGCGCT	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	167
Eco72I	CACGTG	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	45, 267
ErhI	CCWWGG	2 cut(s)	45, 267
FaeI	CATG	3 cut(s)	49, 271, 399
FaiI	YATR	8 cut(s)	35, 47, 201, 269, 303, 392, 397, 440
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	3 cut(s)	45, 267, 395
FbaI	TGATCA	1 cut(s)	52
GlaI	GCGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	5 cut(s)	5, 87, 169, 263, 529
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	49, 271, 399
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	80
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	41, 385
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	4 cut(s)	249, 321, 429, 468
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 97, 215
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	4 cut(s)	249, 321, 429, 468
Hsp92II	CATG	3 cut(s)	49, 271, 399
HspAI	GCGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	3 cut(s)	41, 229, 271
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	4 cut(s)	249, 321, 429, 468
MaeIII	GTNAC	3 cut(s)	15, 245, 425
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	205, 500
MlsI	TGGCCA	2 cut(s)	87, 263
MluCI	AATT	2 cut(s)	131, 283
MluNI	TGGCCA	2 cut(s)	87, 263
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	2 cut(s)	30, 34
Mox20I	TGGCCA	2 cut(s)	87, 263
MscI	TGGCCA	2 cut(s)	87, 263
MseI	TTAA	2 cut(s)	9, 453
Msp20I	TGGCCA	2 cut(s)	87, 263
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	128, 166
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	88, 97, 215
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	2 cut(s)	45, 267
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	49, 271, 399
NlaIV	GGNNCC	2 cut(s)	43, 64
NmuCI	GTSAC	2 cut(s)	15, 425
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
Pfl23II	CGTACG	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	126
PmaCI	CACGTG	1 cut(s)	430
PmlI	CACGTG	1 cut(s)	430
Ppu21I	YACGTR	2 cut(s)	430, 469
Psp1406I	AACGTT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	126
PspCI	CACGTG	1 cut(s)	430
PspEI	GGTNACC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	126
PspLI	CGTACG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	43, 64
PspPI	GGNCC	2 cut(s)	4, 62
RsaI	GTAC	3 cut(s)	191, 230, 471
RsaNI	GTAC	3 cut(s)	190, 229, 470
SaqAI	TTAA	2 cut(s)	9, 453
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	4, 62
ScrFI	CCNGG	2 cut(s)	128, 166
SetI	ASST	9 cut(s)	17, 22, 84, 191, 252, 276, 324, 432, 471
SfaNI	GCATC	1 cut(s)	376
SinI	GGWCC	1 cut(s)	62
SnaBI	TACGTA	1 cut(s)	469
Sse9I	AATT	2 cut(s)	131, 283
SsiI	CCGC	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	126, 164
StyI	CCWWGG	2 cut(s)	45, 267
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	4 cut(s)	252, 324, 432, 471
TaqI	TCGA	2 cut(s)	281, 496
TasI	AATT	2 cut(s)	131, 283
Tru1I	TTAA	2 cut(s)	9, 453
Tru9I	TTAA	2 cut(s)	9, 453
TseFI	GTSAC	2 cut(s)	15, 425
Tsp45I	GTSAC	2 cut(s)	15, 425
TspGWI	ACGGA	3 cut(s)	75, 216, 246
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.