AT3G26580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011343
Physical Location & Seq
Forward (+)
9758797 .. 9760548
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26580.1

Sequence Viewer

Length: 1053 bp
ATGGCGGCGGTTATTGGAAACGTGGCGTTGTTACTTGACGTTAACTCTCACCGTACGGTGGTAACTGATCGGAGAATTCGTTTAACGGTGGTCGACGTCGTTTTGAATTTACAAAAGAGAGATTCGCACAGTCACGTTTCTCATTACGCTGCTCTCTCTTCCAATAAGCCTCTTGAATCTGACGGCGAAGCTCGGGTTCGCCGGTTTTTAACTCGCGGAAAAGCGAATTCCAGAGCTAACGCCGTCGATTTCGACGACGCGGGATCCAGCGACGAAGAAAGTAGTGACGGAGGCGGTGGTGGTGGTGACGAGGAGGAGGAGGAGGAATATTTCGATGTGGAGAAGGAGAGGAAGAGGAGAGCTAAGGAATTTCATGATACGAAGGAGCTTGAGAGGAAAGCAGAGGAGTTACAGTATAAGATTGATGAAGAAGGAGACGATTCAGAGGAGAAGAAGAGGATGAGAGTGAAGAGAGAACTCCAAAAGGTAGCTCAGGAGCAAGCAGAGAGGAGAAAAACTGCAGAATTGATGTTTGAACTAGGTCAAAAGGCTTATGGTAAAGGAATGTATGGACGAGCGATAGAGTTTCTTGAAGGAGCTCTTACGATTATCCCAAGGCCAACACTCTTTGGTGGTGAGATACAAATTTGGTTAGCTATGGCATATGAGGCCAATAATCGCCACGCTGATTGCATTGATCTTTATCAGCAATTAGAGAAGAAACATCCCAGTCCTGGTATTCGTCGTCAAGCTTCTGAGCTTCGGTATATCTTGCAAGCTCCTAAGCTTAAGATATCTCAGGAGGAAATGGTTACTATTCCCATGATCGGTTCAAGTTACGACAGCTATGCAGTGACATGGAGTGATAAGGAAAGGGATAAGGAGCGGCGAATGAATGCATCGACTACGAATCAGCTCAACTCGAGTGATGATTTTCTAGGAAAGCTCTTGGTTTGGCGACCGGTGGTCGGTATGGAGAAGAACCGAGTCTTTTGGCTTGCTTTGACACTGTGGTTTGGTTTGGTTGGAGCAGCACTCATCTTACAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

39.94

Weight (kDa)

5.94

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26580
fragaria_vesca FvH4_4g25530 FvH4_4g25530
malus_domestica MD13G1101900.v1.1 MD16G1102400.v1.1
prunus_persica Prupe.1G243900_v2.0.a1 Prupe.1G243900_v2.0.a1
pyrus_communis pycom13g08900 pycom16g08700
rosa_chinensis RchiOBHm_Chr4g0432921
rosa_laevigata RLG00000006801
rosa_multiflora Rmu_sc0001762.1_g000047
rosa_roxburghii Rroxscaffold_5G00374330
rosa_rugosa Rorug04G0263800 Rorug04G0263900
rosa_samantha Rh4AG317900 Rh4BG326100 Rh4CG341200 Rh4DG321200
rosa_wichuraiana Rw4G027640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 886
AccI GTMKAC 1 cut(s) 93
AccII CGCG 2 cut(s) 216, 260
AciI CCGC 6 cut(s) 5, 8, 216, 260, 294, 886
AclWI GGATC 2 cut(s) 258, 271
AcsI RAATTY 5 cut(s) 75, 106, 226, 368, 645
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 58, 734, 827, 968
AflII CTTAAG 1 cut(s) 788
AgeI ACCGGT 1 cut(s) 961
AgsI TTSAA 5 cut(s) 106, 176, 536, 593, 834
AhdI GACNNNNNGTC 1 cut(s) 965
AjnI CCWGG 1 cut(s) 733
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 2 cut(s) 258, 271
Ama87I CYCGRG 2 cut(s) 192, 922
AoxI GGCC 2 cut(s) 617, 669
ApeKI GCWGC 2 cut(s) 149, 1031
ApoI RAATTY 5 cut(s) 75, 106, 226, 368, 645
AsiGI ACCGGT 1 cut(s) 961
AsuHPI GGTGA 3 cut(s) 41, 317, 647
AvaI CYCGRG 2 cut(s) 192, 922
BamHI GGATCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 2 cut(s) 136, 1043
BceAI ACGGC 2 cut(s) 199, 227
BcgI CGANNNNNNTGC 2 cut(s) 830, 864
BciT130I CCWGG 1 cut(s) 735
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 539, 938
BfmI CTRYAG 1 cut(s) 519
BfrI CTTAAG 1 cut(s) 788
BisI GCNGC 4 cut(s) 6, 150, 887, 1032
BlsI GCNGC 4 cut(s) 7, 151, 888, 1033
Bme1390I CCNGG 1 cut(s) 735
BmeRI GACNNNNNGTC 1 cut(s) 965
BmeT110I CYCGRG 2 cut(s) 192, 922
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 735
BmrI ACTGGG 1 cut(s) 723
BmsI GCATC 1 cut(s) 908
BmuI ACTGGG 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 1020, 1052
Bpu10I CCTNAGC 3 cut(s) 363, 492, 783
BpuEI CTTGAG 1 cut(s) 410
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 614
BsaWI WCCGGW 1 cut(s) 961
BsaXI ACNNNNNCTCC 4 cut(s) 64, 94, 398, 428
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 734, 827, 968
Bse118I RCCGGY 2 cut(s) 201, 961
Bse1I ACTGG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 2 cut(s) 465, 724
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 4 cut(s) 58, 734, 827, 968
BseMII CTCAG 3 cut(s) 506, 747, 812
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 8 cut(s) 326, 329, 332, 335, 370, 419, 461, 523
BseXI GCAGC 2 cut(s) 136, 1043
Bsh1236I CGCG 2 cut(s) 216, 260
Bsh1285I CGRYCG 1 cut(s) 962
BshFI GGCC 2 cut(s) 619, 671
BshTI ACCGGT 1 cut(s) 961
BsiEI CGRYCG 1 cut(s) 962
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 2 cut(s) 192, 922
BsiSI CCGG 2 cut(s) 202, 962
BsiWI CGTACG 1 cut(s) 53
BslI CCNNNNNNNGG 4 cut(s) 58, 734, 827, 968
BsmAI GTCTC 1 cut(s) 429
BsmBI CGTCTC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 901
BsnI GGCC 2 cut(s) 619, 671
BsoBI CYCGRG 2 cut(s) 192, 922
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 4 cut(s) 67, 263, 697, 825
BspACI CCGC 6 cut(s) 5, 8, 216, 260, 294, 886
BspANI GGCC 2 cut(s) 619, 671
BspCNI CTCAG 3 cut(s) 505, 748, 811
BspFNI CGCG 2 cut(s) 216, 260
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 2 cut(s) 258, 271
BspTI CTTAAG 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 886
BsrFI RCCGGY 2 cut(s) 201, 961
BsrI ACTGG 1 cut(s) 729
BssAI RCCGGY 2 cut(s) 201, 961
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 4 cut(s) 67, 263, 697, 825
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 614
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 6 cut(s) 53, 58, 88, 131, 414, 1011
Bst6I CTCTTC 4 cut(s) 163, 347, 449, 464
BstACI GRCGYC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 501, 777, 999
BstDEI CTNAG 5 cut(s) 363, 492, 756, 783, 798
BstF5I GGATG 2 cut(s) 465, 724
BstFNI CGCG 2 cut(s) 216, 260
BstKTI GATC 4 cut(s) 70, 266, 700, 828
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 4 cut(s) 67, 263, 697, 825
BstMCI CGRYCG 1 cut(s) 962
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 1 cut(s) 735
BstSCI CCNGG 1 cut(s) 733
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 2 cut(s) 216, 260
BstV1I GCAGC 2 cut(s) 136, 1043
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 2 cut(s) 619, 671
BtsCI GGATG 2 cut(s) 465, 724
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 2 cut(s) 858, 1007
Cac8I GCNNGC 3 cut(s) 501, 777, 999
CciI TCATGA 1 cut(s) 373
Cfr10I RCCGGY 2 cut(s) 201, 961
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 54
CspAI ACCGGT 1 cut(s) 961
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviAII CATG 3 cut(s) 374, 823, 858
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 5 cut(s) 363, 492, 756, 783, 798
DpnI GATC 4 cut(s) 69, 265, 699, 827
DpnII GATC 4 cut(s) 67, 263, 697, 825
DriI GACNNNNNGTC 1 cut(s) 965
Eam1104I CTCTTC 4 cut(s) 163, 347, 449, 464
Eam1105I GACNNNNNGTC 1 cut(s) 965
EarI CTCTTC 4 cut(s) 163, 347, 449, 464
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 599
Eco88I CYCGRG 2 cut(s) 192, 922
EcoICRI GAGCTC 1 cut(s) 599
EcoRI GAATTC 2 cut(s) 75, 226
EcoRII CCWGG 1 cut(s) 733
EcoRV GATATC 1 cut(s) 795
EcoT14I CCWWGG 1 cut(s) 614
EcoT22I ATGCAT 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 614
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 3 cut(s) 377, 826, 861
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 3 cut(s) 373, 822, 857
FauI CCCGC 1 cut(s) 253
FauNDI CATATG 1 cut(s) 664
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 6, 150, 887, 1032
FokI GGATG 2 cut(s) 472, 711
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 4 cut(s) 6, 150, 887, 1032
FspBI CTAG 2 cut(s) 539, 938
GluI GCNGC 4 cut(s) 6, 150, 887, 1032
HaeIII GGCC 2 cut(s) 619, 671
HapII CCGG 2 cut(s) 202, 962
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 3 cut(s) 377, 826, 861
HincII GTYRAC 2 cut(s) 43, 94
HindII GTYRAC 2 cut(s) 43, 94
HindIII AAGCTT 2 cut(s) 750, 785
HinfI GANTC 5 cut(s) 122, 176, 440, 910, 987
HpaI GTTAAC 1 cut(s) 43
HpaII CCGG 2 cut(s) 202, 962
HphI GGTGA 3 cut(s) 41, 317, 647
Hpy166II GTNNAC 2 cut(s) 43, 94
Hpy188I TCNGA 4 cut(s) 72, 181, 445, 757
Hpy188III TCNNGA 6 cut(s) 173, 231, 374, 494, 590, 800
Hpy8I GTNNAC 2 cut(s) 43, 94
Hpy99I CGWCG 7 cut(s) 98, 101, 248, 257, 260, 275, 747
HpyAV CCTTC 4 cut(s) 337, 376, 425, 587
HpyCH4III ACNGT 6 cut(s) 53, 58, 88, 131, 414, 1011
HpyCH4IV ACGT 4 cut(s) 21, 39, 96, 135
HpyCH4V TGCA 5 cut(s) 521, 693, 775, 851, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 5 cut(s) 363, 492, 756, 783, 798
HpySE526I ACGT 4 cut(s) 21, 39, 96, 135
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 3 cut(s) 377, 826, 861
KspAI GTTAAC 1 cut(s) 43
Kzo9I GATC 4 cut(s) 67, 263, 697, 825
LmnI GCTCC 6 cut(s) 385, 496, 596, 784, 883, 1028
LpnPI CCDG 9 cut(s) 215, 244, 280, 479, 720, 742, 747, 785, 975
Lsp1109I GCAGC 2 cut(s) 136, 1043
LweI GCATC 1 cut(s) 908
MaeI CTAG 2 cut(s) 539, 938
MaeII ACGT 4 cut(s) 21, 39, 96, 135
MaeIII GTNAC 9 cut(s) 30, 61, 131, 284, 305, 408, 811, 836, 853
MalI GATC 4 cut(s) 69, 265, 699, 827
MbiI CCGCTC 1 cut(s) 886
MboI GATC 4 cut(s) 67, 263, 697, 825
MboII GAAGA 9 cut(s) 150, 287, 364, 440, 463, 466, 481, 730, 991
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 7 cut(s) 75, 106, 226, 368, 524, 645, 710
MlyI GAGTC 1 cut(s) 996
MmeI TCCRAC 1 cut(s) 1006
Mph1103I ATGCAT 1 cut(s) 901
MseI TTAA 4 cut(s) 42, 83, 209, 789
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 2 cut(s) 202, 962
MspR9I CCNGG 1 cut(s) 735
Mva1269I GAATGC 1 cut(s) 901
MvaI CCWGG 1 cut(s) 735
MvnI CGCG 2 cut(s) 216, 260
MwoI GCNNNNNNNGC 1 cut(s) 668
NdeI CATATG 1 cut(s) 664
NdeII GATC 4 cut(s) 67, 263, 697, 825
NlaIII CATG 3 cut(s) 377, 826, 861
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 4 cut(s) 131, 284, 305, 853
NsiI ATGCAT 1 cut(s) 901
PaeR7I CTCGAG 1 cut(s) 922
PagI TCATGA 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 76, 252
PctI GAATGC 1 cut(s) 901
PfeI GAWTC 4 cut(s) 122, 176, 440, 910
Pfl23II CGTACG 1 cut(s) 53
PinAI ACCGGT 1 cut(s) 961
PkrI GCNGC 4 cut(s) 7, 151, 888, 1033
PleI GAGTC 1 cut(s) 995
PpsI GAGTC 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 733
PspGI CCWGG 1 cut(s) 733
PspLI CGTACG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 265
PspXI VCTCGAGB 1 cut(s) 922
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SacI GAGCTC 1 cut(s) 601
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 4 cut(s) 42, 83, 209, 789
SatI GCNGC 4 cut(s) 6, 150, 887, 1032
Sau3AI GATC 4 cut(s) 67, 263, 697, 825
SchI GAGTC 1 cut(s) 996
ScrFI CCNGG 1 cut(s) 735
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 1 cut(s) 908
SfcI CTRYAG 1 cut(s) 519
Sfr274I CTCGAG 1 cut(s) 922
SlaI CTCGAG 1 cut(s) 922
SmlI CTYRAG 3 cut(s) 389, 788, 922
SmoI CTYRAG 3 cut(s) 389, 788, 922
Sse9I AATT 7 cut(s) 75, 106, 226, 368, 524, 645, 710
SsiI CCGC 6 cut(s) 5, 8, 216, 260, 294, 886
SspI AATATT 1 cut(s) 329
SspMI CTAG 2 cut(s) 539, 938
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 733
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 6 cut(s) 53, 58, 88, 131, 414, 1011
TaiI ACGT 4 cut(s) 24, 42, 99, 138
TaqI TCGA 6 cut(s) 93, 246, 252, 333, 902, 923
TasI AATT 7 cut(s) 75, 106, 226, 368, 524, 645, 710
TauI GCSGC 2 cut(s) 8, 889
TfiI GAWTC 4 cut(s) 122, 176, 440, 910
Tru1I TTAA 4 cut(s) 42, 83, 209, 789
Tru9I TTAA 4 cut(s) 42, 83, 209, 789
TscAI CASTG 2 cut(s) 858, 1014
TseFI GTSAC 4 cut(s) 131, 284, 305, 853
TseI GCWGC 2 cut(s) 149, 1031
Tsp45I GTSAC 4 cut(s) 131, 284, 305, 853
TspDTI ATGAA 3 cut(s) 362, 441, 908
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 858, 1014
Vha464I CTTAAG 1 cut(s) 788
XapI RAATTY 5 cut(s) 75, 106, 226, 368, 645
XhoI CTCGAG 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 2 cut(s) 539, 938
ZraI GACGTC 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.