Rroxscaffold_5G00374330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011343
Physical Location & Seq
Reverse (-)
55396104 .. 55398556
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374330.1

Sequence Viewer

Length: 1074 bp
ATGGCCGTACTTGTCGGAAACCTAGCTCTGCTACTAGACATGACCTCGCCTAGGACCATATTACCTGACCGCAAGACTCGTCCGGTGGCGCTGGACGCTTTATTGAACCTAAACCTCAGCCTGCCAAGGAGAGACCCTCACAATCACAGTCCAGCGTATAACGGCTTCATCGCCGCCAAGGGGTTTGACTCGGACGGCGGCGAGACTCGGAGCCAACGAGTCGTGGCTCGGGGGAAGGCGAATTCGAAGGTGAACGGGGTGGACTTTGGGAGGGACGAGGAGGGGAACGGGAATGGATTTGGGGAAGGGGATGGGGAGGAGGAGCCGCCGGCGCCGTTGGATTGGGAGAAGGAAATGCAGCGGAGAGTGAAGGAGATCGAGGAGAGGAAAGAGCTGGAGAAGAAGGCTGAGGAGTTACAGAGCCGGATCGAGGAGGATTATGAAGATGATGGTAGAGAAGAGACGGAGGAGGCCAAGCGGATGAGAGTCAGGAAAGAGCTTGAAAAGGTGGCTAAGGAGCAGGCAGAGCGAAGAGCCACCGCACAGTTAATGTTCGACTTGGGGCAGAAGGCTTATGGGAGGGGGATGTACGGTCGCGCCATTGAGTTCCTAGAAGGAGCACTGACAATCATTCCAAGGCCAACGTTATTTGGTGGCGAGATTCAAATTTGGCTCGCTATGGCCTACGAGGCTAATAAGCGCCATGCCGATTGCATTGATCTTTATAAGCAATTGGAGAGCAAGCACCCCAGTGTCAGCATACGACGCCAGGCTGCAGACCTTCGCTACATTTTGCAAGCACCAAAGATCAAGATTACCCGGGAAGAGATGGTAACCATACCACTCATTGGTTCTAGTTATGACAGCTATGCTGGAACGTGGAGTGATAAATACAAGGACAAAGATCAGAGGAGCAGTGGGACAGTAACCAATCAGATTCCATCGTCGAAAGACTATTTTGGGGACTTCATGGTCTGGCGACCCCCAATTGGATTGGAGAAAAGCCAAGCTTTCTGGATAGCCTTGACATTATGGTTGGGTTTAGTTGGAACTGCAGTCTTTCTTCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

40.37

Weight (kDa)

5.69

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26580
fragaria_vesca FvH4_4g25530 FvH4_4g25530
malus_domestica MD13G1101900.v1.1 MD16G1102400.v1.1
prunus_persica Prupe.1G243900_v2.0.a1 Prupe.1G243900_v2.0.a1
pyrus_communis pycom13g08900 pycom16g08700
rosa_chinensis RchiOBHm_Chr4g0432921
rosa_laevigata RLG00000006801
rosa_multiflora Rmu_sc0001762.1_g000047
rosa_roxburghii Rroxscaffold_5G00374330
rosa_rugosa Rorug04G0263800 Rorug04G0263900
rosa_samantha Rh4AG317900 Rh4BG326100 Rh4CG341200 Rh4DG321200
rosa_wichuraiana Rw4G027640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AasI GACNNNNNNGTC 1 cut(s) 971
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 848
AccII CGCG 1 cut(s) 597
AciI CCGC 7 cut(s) 70, 174, 198, 326, 361, 478, 540
AclI AACGTT 1 cut(s) 644
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 241, 666
AcyI GRCGYC 2 cut(s) 332, 766
AfaI GTAC 2 cut(s) 9, 590
AfiI CCNNNNNNNGG 5 cut(s) 51, 180, 430, 848, 989
AgsI TTSAA 4 cut(s) 106, 503, 665, 1067
AjnI CCWGG 1 cut(s) 768
AleI CACNNNNGTG 1 cut(s) 750
AluBI AGCT 5 cut(s) 26, 394, 499, 867, 1010
AluI AGCT 5 cut(s) 26, 394, 499, 867, 1010
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 3 cut(s) 126, 197, 455
AlwI GGATC 1 cut(s) 434
Ama87I CYCGRG 2 cut(s) 228, 819
AoxI GGCC 4 cut(s) 3, 471, 638, 681
ApeKI GCWGC 2 cut(s) 358, 773
ApoI RAATTY 2 cut(s) 241, 666
AspA2I CCTAGG 1 cut(s) 50
AspLEI GCGC 4 cut(s) 91, 334, 599, 702
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 2 cut(s) 820, 821
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 2 cut(s) 228, 819
AvaII GGWCC 1 cut(s) 54
AvrII CCTAGG 1 cut(s) 50
BanI GGYRCC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
Bbv12I GWGCWC 1 cut(s) 622
BbvCI CCTCAGC 2 cut(s) 116, 408
BbvI GCAGC 2 cut(s) 370, 760
BccI CCATC 4 cut(s) 305, 443, 823, 949
BceAI ACGGC 3 cut(s) 178, 211, 319
BciT130I CCWGG 1 cut(s) 770
BcnI CCSGG 2 cut(s) 820, 821
BcoDI GTCTC 3 cut(s) 126, 197, 455
BfaI CTAG 5 cut(s) 23, 35, 51, 611, 855
BfmI CTRYAG 2 cut(s) 774, 1053
BfoI RGCGCY 3 cut(s) 92, 335, 703
BglI GCCNNNNNGGC 1 cut(s) 689
BisI GCNGC 5 cut(s) 174, 199, 326, 359, 774
BlnI CCTAGG 1 cut(s) 50
BlsI GCNGC 5 cut(s) 175, 200, 327, 360, 775
Bme1390I CCNGG 3 cut(s) 770, 820, 821
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 2 cut(s) 228, 819
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 3 cut(s) 212, 324, 333
BmrFI CCNGG 3 cut(s) 770, 820, 821
BmrI ACTGGG 1 cut(s) 744
BmuI ACTGGG 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 3 cut(s) 116, 408, 513
Bpu14I TTCGAA 1 cut(s) 245
BpuMI CCSGG 2 cut(s) 820, 821
BsaHI GRCGYC 2 cut(s) 332, 766
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 50, 125, 177, 635, 819
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 5 cut(s) 51, 180, 430, 848, 989
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 750
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 5 cut(s) 50, 125, 177, 635, 819
BseGI GGATG 3 cut(s) 316, 486, 591
BseLI CCNNNNNNNGG 5 cut(s) 51, 180, 430, 848, 989
BseMII CTCAG 2 cut(s) 130, 399
BseNI ACTGG 1 cut(s) 750
BseRI GAGGAG 8 cut(s) 293, 332, 335, 395, 425, 446, 482, 925
BseXI GCAGC 2 cut(s) 370, 760
Bsh1236I CGCG 1 cut(s) 597
Bsh1285I CGRYCG 1 cut(s) 595
BshFI GGCC 4 cut(s) 5, 473, 640, 683
BshNI GGYRCC 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 595
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 228, 819
BsiSI CCGG 4 cut(s) 83, 329, 424, 820
BslFI GGGAC 3 cut(s) 287, 934, 977
BslI CCNNNNNNNGG 5 cut(s) 51, 180, 430, 848, 989
BsmAI GTCTC 3 cut(s) 126, 197, 455
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 3 cut(s) 287, 934, 977
BsnI GGCC 4 cut(s) 5, 473, 640, 683
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 2 cut(s) 228, 819
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 5 cut(s) 375, 426, 718, 807, 904
BspACI CCGC 7 cut(s) 70, 174, 198, 326, 361, 478, 540
BspANI GGCC 4 cut(s) 5, 473, 640, 683
BspCNI CTCAG 2 cut(s) 129, 400
BspFNI CGCG 1 cut(s) 597
BspLI GGNNCC 3 cut(s) 212, 324, 333
BspMAI CTGCAG 2 cut(s) 778, 1057
BspPI GGATC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 526
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 1 cut(s) 750
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 5 cut(s) 50, 125, 177, 635, 819
BssMI GATC 5 cut(s) 375, 426, 718, 807, 904
BssNI GRCGYC 2 cut(s) 332, 766
BssT1I CCWWGG 4 cut(s) 50, 125, 177, 635
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 4 cut(s) 149, 546, 593, 925
Bst6I CTCTTC 3 cut(s) 453, 526, 819
BstACI GRCGYC 2 cut(s) 332, 766
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 6 cut(s) 122, 330, 522, 675, 743, 798
BstDEI CTNAG 3 cut(s) 116, 408, 513
BstEII GGTNACC 1 cut(s) 832
BstENI CCTNNNNNAGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 316, 486, 591
BstFNI CGCG 1 cut(s) 597
BstH2I RGCGCY 3 cut(s) 92, 335, 703
BstHHI GCGC 4 cut(s) 91, 334, 599, 702
BstKTI GATC 5 cut(s) 378, 429, 721, 810, 907
BstMAI GTCTC 3 cut(s) 126, 197, 455
BstMBI GATC 5 cut(s) 375, 426, 718, 807, 904
BstMCI CGRYCG 1 cut(s) 595
BstMWI GCNNNNNNNGC 5 cut(s) 95, 331, 526, 689, 765
BstNI CCWGG 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 832
BstSCI CCNGG 3 cut(s) 768, 818, 819
BstSFI CTRYAG 2 cut(s) 774, 1053
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 370, 760
BsuRI GGCC 4 cut(s) 5, 473, 640, 683
BtgZI GCGATG 1 cut(s) 154
BtsCI GGATG 3 cut(s) 316, 486, 591
BtsI GCAGTG 1 cut(s) 922
BtsIMutI CAGTG 3 cut(s) 620, 757, 922
Cac8I GCNNGC 6 cut(s) 122, 330, 522, 675, 743, 798
CfoI GCGC 4 cut(s) 91, 334, 599, 702
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 54
Cfr9I CCCGGG 1 cut(s) 819
CseI GACGC 2 cut(s) 104, 774
Csp6I GTAC 2 cut(s) 8, 589
CviAII CATG 3 cut(s) 40, 704, 970
CviQI GTAC 2 cut(s) 8, 589
DdeI CTNAG 3 cut(s) 116, 408, 513
DinI GGCGCC 1 cut(s) 333
DpnI GATC 5 cut(s) 377, 428, 720, 809, 906
DpnII GATC 5 cut(s) 375, 426, 718, 807, 904
DrdI GACNNNNNNGTC 1 cut(s) 971
DseDI GACNNNNNNGTC 1 cut(s) 971
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 453, 526, 819
EarI CTCTTC 3 cut(s) 453, 526, 819
Eco130I CCWWGG 4 cut(s) 50, 125, 177, 635
Eco31I GGTCTC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 228, 819
Eco91I GGTNACC 1 cut(s) 832
EcoNI CCTNNNNNAGG 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 4 cut(s) 50, 125, 177, 635
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
ErhI CCWWGG 4 cut(s) 50, 125, 177, 635
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 3 cut(s) 43, 707, 973
FalI AAGNNNNNCTT 2 cut(s) 994, 1026
FaqI GGGAC 3 cut(s) 287, 934, 977
FatI CATG 3 cut(s) 39, 703, 969
Fnu4HI GCNGC 5 cut(s) 174, 199, 326, 359, 774
FokI GGATG 3 cut(s) 323, 493, 598
Fsp4HI GCNGC 5 cut(s) 174, 199, 326, 359, 774
FspBI CTAG 5 cut(s) 23, 35, 51, 611, 855
GlaI GCGC 4 cut(s) 90, 333, 598, 701
GluI GCNGC 5 cut(s) 174, 199, 326, 359, 774
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 3 cut(s) 92, 335, 703
HaeIII GGCC 4 cut(s) 5, 473, 640, 683
HapII CCGG 4 cut(s) 83, 329, 424, 820
HgaI GACGC 2 cut(s) 104, 774
HhaI GCGC 4 cut(s) 91, 334, 599, 702
Hin1I GRCGYC 2 cut(s) 332, 766
Hin1II CATG 3 cut(s) 43, 707, 973
Hin6I GCGC 4 cut(s) 89, 332, 597, 700
HinP1I GCGC 4 cut(s) 89, 332, 597, 700
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 7 cut(s) 76, 188, 205, 219, 486, 661, 937
HpaII CCGG 4 cut(s) 83, 329, 424, 820
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 253, 262
Hpy188I TCNGA 5 cut(s) 17, 193, 210, 909, 936
Hpy188III TCNNGA 3 cut(s) 490, 811, 1015
Hpy8I GTNNAC 2 cut(s) 253, 262
Hpy99I CGWCG 2 cut(s) 768, 949
HpyAV CCTTC 9 cut(s) 229, 241, 299, 343, 364, 397, 562, 608, 791
HpyCH4III ACNGT 4 cut(s) 149, 546, 593, 925
HpyCH4IV ACGT 2 cut(s) 644, 878
HpyCH4V TGCA 5 cut(s) 358, 714, 776, 796, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 331, 526, 689, 765
HpyF3I CTNAG 3 cut(s) 116, 408, 513
HpySE526I ACGT 2 cut(s) 644, 878
Hsp92I GRCGYC 2 cut(s) 332, 766
Hsp92II CATG 3 cut(s) 43, 707, 973
HspAI GCGC 4 cut(s) 89, 332, 597, 700
KasI GGCGCC 1 cut(s) 331
KroI GCCGGC 1 cut(s) 328
KroNI GCCGGC 1 cut(s) 330
Kzo9I GATC 5 cut(s) 375, 426, 718, 807, 904
LguI GCTCTTC 1 cut(s) 526
LmnI GCTCC 5 cut(s) 210, 322, 517, 617, 912
Lsp1109I GCAGC 2 cut(s) 370, 760
MaeI CTAG 5 cut(s) 23, 35, 51, 611, 855
MaeII ACGT 2 cut(s) 644, 878
MaeIII GTNAC 3 cut(s) 414, 832, 925
MalI GATC 5 cut(s) 377, 428, 720, 809, 906
MboI GATC 5 cut(s) 375, 426, 718, 807, 904
MboII GAAGA 6 cut(s) 412, 455, 470, 543, 836, 1055
MfeI CAATTG 2 cut(s) 731, 987
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 4 cut(s) 241, 666, 731, 987
Mly113I GGCGCC 1 cut(s) 332
MlyI GAGTC 5 cut(s) 70, 182, 199, 228, 495
MmeI TCCRAC 2 cut(s) 318, 1027
MreI CGCCGGCG 1 cut(s) 328
MroNI GCCGGC 1 cut(s) 328
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 4 cut(s) 83, 329, 424, 820
MspR9I CCNGG 3 cut(s) 770, 820, 821
MunI CAATTG 2 cut(s) 731, 987
MvaI CCWGG 1 cut(s) 770
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 5 cut(s) 95, 331, 526, 689, 765
NaeI GCCGGC 1 cut(s) 330
NarI GGCGCC 1 cut(s) 332
NciI CCSGG 2 cut(s) 820, 821
NdeII GATC 5 cut(s) 375, 426, 718, 807, 904
NgoMIV GCCGGC 1 cut(s) 328
NlaIII CATG 3 cut(s) 43, 707, 973
NlaIV GGNNCC 3 cut(s) 212, 324, 333
NspV TTCGAA 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 750
PciSI GCTCTTC 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 661, 937
PflMI CCANNNNNTGG 1 cut(s) 848
PkrI GCNGC 5 cut(s) 175, 200, 327, 360, 775
PleI GAGTC 5 cut(s) 70, 182, 199, 227, 494
PluTI GGCGCC 1 cut(s) 335
PpsI GAGTC 5 cut(s) 70, 182, 199, 227, 494
PsiI TTATAA 1 cut(s) 726
Psp1406I AACGTT 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 768
PspEI GGTNACC 1 cut(s) 832
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 3 cut(s) 212, 324, 333
PspPI GGNCC 1 cut(s) 54
PstI CTGCAG 2 cut(s) 778, 1057
RsaI GTAC 2 cut(s) 9, 590
RsaNI GTAC 2 cut(s) 8, 589
RseI CAYNNNNRTG 1 cut(s) 750
SapI GCTCTTC 1 cut(s) 526
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 5 cut(s) 174, 199, 326, 359, 774
Sau3AI GATC 5 cut(s) 375, 426, 718, 807, 904
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 5 cut(s) 70, 182, 199, 228, 495
ScrFI CCNGG 3 cut(s) 770, 820, 821
SduI GDGCHC 1 cut(s) 622
SfcI CTRYAG 2 cut(s) 774, 1053
SfoI GGCGCC 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 245
SgrAI CRCCGGYG 1 cut(s) 328
SinI GGWCC 1 cut(s) 54
SmaI CCCGGG 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 750
Sse9I AATT 4 cut(s) 241, 666, 731, 987
SsiI CCGC 7 cut(s) 70, 174, 198, 326, 361, 478, 540
SspDI GGCGCC 1 cut(s) 331
SspMI CTAG 5 cut(s) 23, 35, 51, 611, 855
StyD4I CCNGG 3 cut(s) 768, 818, 819
StyI CCWWGG 4 cut(s) 50, 125, 177, 635
TaaI ACNGT 4 cut(s) 149, 546, 593, 925
TaiI ACGT 2 cut(s) 647, 881
TaqI TCGA 5 cut(s) 245, 378, 429, 555, 947
TasI AATT 4 cut(s) 241, 666, 731, 987
TauI GCSGC 3 cut(s) 176, 201, 328
TfiI GAWTC 2 cut(s) 661, 937
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 3 cut(s) 627, 757, 922
TseI GCWGC 2 cut(s) 358, 773
TspDTI ATGAA 3 cut(s) 157, 456, 958
TspGWI ACGGA 1 cut(s) 479
TspMI CCCGGG 1 cut(s) 819
TspRI CASTG 3 cut(s) 627, 757, 922
Van91I CCANNNNNTGG 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 49
XapI RAATTY 2 cut(s) 241, 666
XmaI CCCGGG 1 cut(s) 819
XmaJI CCTAGG 1 cut(s) 50
XspI CTAG 5 cut(s) 23, 35, 51, 611, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.