Rorug04G0263900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011343
Physical Location & Seq
Reverse (-)
43543464 .. 43544610
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0263900.1

Sequence Viewer

Length: 489 bp
ATGGCCTCCTTCAAAACACTTGTCTTTGTGTCGCTCTTGGTTATTGCTGCACTGGCAGTAGTTCCAATCGCCAAAGCGCAACTTGGCGGGCTCGGTGGTCTCACGGCCGGGCTTCTTGGGCTAATACGCATACAAGGGACTCTGTTTTGCACGGCCAATGGCCGTGTCAGCAATGCTGGCGCCTCCCTTACACCAGTATTTCCAAATGCTACAGTCCAATTGCAATGTGGATCAGGAAATGTGGTATCTACCGCTATTACGAATACCTCAGGACTCTTTTCAATCGTGCTAGATCCTCTCCAGTTTCTTCTGTCTTCACTATTGTCTAATTGCAAGCTCGTTGTTAGCACACCACTCTCCAGCTGCAACTCTAGTTTGTCTGGAACCACGATACTCCAATCTACCTTGCAGCTCATTGGAACAACCCTCGCGGGCCTCCTCAGCATCATCAATCTCATTCCAGCCGGTTTCAGCCCCATCATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

16.33

Weight (kDa)

9.25

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26580
fragaria_vesca FvH4_4g25530 FvH4_4g25530
malus_domestica MD13G1101900.v1.1 MD16G1102400.v1.1
prunus_persica Prupe.1G243900_v2.0.a1 Prupe.1G243900_v2.0.a1
pyrus_communis pycom13g08900 pycom16g08700
rosa_chinensis RchiOBHm_Chr4g0432921
rosa_laevigata RLG00000006801
rosa_multiflora Rmu_sc0001762.1_g000047
rosa_roxburghii Rroxscaffold_5G00374330
rosa_rugosa Rorug04G0263800 Rorug04G0263900
rosa_samantha Rh4AG317900 Rh4BG326100 Rh4CG341200 Rh4DG321200
rosa_wichuraiana Rw4G027640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 87, 252, 431
AclWI GGATC 2 cut(s) 238, 287
AcoI YGGCCR 3 cut(s) 105, 153, 160
AcyI GRCGYC 1 cut(s) 180
AgsI TTSAA 2 cut(s) 13, 282
AluBI AGCT 3 cut(s) 337, 363, 412
AluI AGCT 3 cut(s) 337, 363, 412
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 2 cut(s) 238, 287
AoxI GGCC 5 cut(s) 3, 105, 153, 160, 433
ApeKI GCWGC 3 cut(s) 47, 363, 409
ArsI GACNNNNNNTTYG 1 cut(s) 38
AseI ATTAAT 1 cut(s) 483
AspLEI GCGC 2 cut(s) 79, 182
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 268
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 306
BbvCI CCTCAGC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 34, 350, 421
BccI CCATC 1 cut(s) 485
BceAI ACGGC 3 cut(s) 120, 147, 168
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 2 cut(s) 290, 372
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 183
BisI GCNGC 3 cut(s) 48, 364, 410
BlsI GCNGC 3 cut(s) 49, 365, 411
Bme1390I CCNGG 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 181, 385
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 2 cut(s) 284, 343
Bpu10I CCTNAGC 1 cut(s) 440
BpuMI CCSGG 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 3 cut(s) 57, 194, 301
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 2 cut(s) 178, 230
BseMI GCAATG 2 cut(s) 178, 230
BseMII CTCAG 2 cut(s) 282, 454
BseNI ACTGG 3 cut(s) 57, 194, 301
BseRI GAGGAG 1 cut(s) 428
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 34, 350, 421
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 431
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 5 cut(s) 5, 107, 155, 162, 435
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 108, 465
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 5 cut(s) 5, 107, 155, 162, 435
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 230, 292
BspACI CCGC 3 cut(s) 87, 252, 431
BspANI GGCC 5 cut(s) 5, 107, 155, 162, 435
BspCNI CTCAG 2 cut(s) 281, 453
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 181, 385
BspPI GGATC 2 cut(s) 238, 287
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 178, 230
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 3 cut(s) 57, 194, 301
BssAI RCCGGY 1 cut(s) 464
BssMI GATC 2 cut(s) 230, 292
BssNI GRCGYC 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 180
BstC8I GCNNGC 4 cut(s) 89, 178, 335, 433
BstDEI CTNAG 2 cut(s) 268, 440
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 79, 182
BstKTI GATC 2 cut(s) 233, 295
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 230, 292
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 5 cut(s) 53, 118, 168, 177, 441
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 34, 350, 421
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BstZI CGGCCG 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 5 cut(s) 5, 107, 155, 162, 435
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 4 cut(s) 89, 178, 335, 433
CfoI GCGC 2 cut(s) 79, 182
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 268, 440
DinI GGCGCC 1 cut(s) 181
DpnI GATC 2 cut(s) 232, 294
DpnII GATC 2 cut(s) 230, 292
EaeI YGGCCR 3 cut(s) 105, 153, 160
EagI CGGCCG 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 104
Eco52I CGGCCG 1 cut(s) 105
Eco81I CCTNAGG 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaiI YATR 1 cut(s) 131
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 1 cut(s) 151
FauI CCCGC 2 cut(s) 80, 424
Fnu4HI GCNGC 3 cut(s) 48, 364, 410
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 48, 364, 410
FspBI CTAG 2 cut(s) 290, 372
GlaI GCGC 2 cut(s) 78, 181
GluI GCNGC 3 cut(s) 48, 364, 410
GsuI CTGGAG 2 cut(s) 284, 343
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 5 cut(s) 5, 107, 155, 162, 435
HapII CCGG 2 cut(s) 108, 465
HhaI GCGC 2 cut(s) 79, 182
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 2 cut(s) 77, 180
HinP1I GCGC 2 cut(s) 77, 180
HinfI GANTC 2 cut(s) 139, 273
HpaII CCGG 2 cut(s) 108, 465
Hpy188III TCNNGA 3 cut(s) 234, 270, 381
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 6 cut(s) 50, 150, 223, 333, 366, 409
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 118, 168, 177, 441
HpyF3I CTNAG 2 cut(s) 268, 440
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 2 cut(s) 77, 180
KasI GGCGCC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 230, 292
Lsp1109I GCAGC 3 cut(s) 34, 350, 421
LweI GCATC 1 cut(s) 453
MaeI CTAG 2 cut(s) 290, 372
MalI GATC 2 cut(s) 232, 294
MboI GATC 2 cut(s) 230, 292
MboII GAAGA 2 cut(s) 299, 306
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 218, 328, 484
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 2 cut(s) 133, 267
MnlI CCTC 7 cut(s) 16, 193, 277, 306, 437, 446, 449
MseI TTAA 2 cut(s) 483, 487
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 2 cut(s) 108, 465
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 218
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 5 cut(s) 53, 118, 168, 177, 441
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 1 cut(s) 109
NdeII GATC 2 cut(s) 230, 292
NlaIV GGNNCC 2 cut(s) 181, 385
PacI TTAATTAA 1 cut(s) 487
PkrI GCNGC 3 cut(s) 49, 365, 411
PleI GAGTC 2 cut(s) 133, 267
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 2 cut(s) 133, 267
PshBI ATTAAT 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 181, 385
PspPI GGNCC 1 cut(s) 433
PsuI RGATCY 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 363
SaqAI TTAA 2 cut(s) 483, 487
SatI GCNGC 3 cut(s) 48, 364, 410
Sau3AI GATC 2 cut(s) 230, 292
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 2 cut(s) 133, 267
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 93
SetI ASST 5 cut(s) 269, 339, 365, 407, 414
SfaNI GCATC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 181
Sse9I AATT 3 cut(s) 218, 328, 484
SsiI CCGC 3 cut(s) 87, 252, 431
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 2 cut(s) 290, 372
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 214
TasI AATT 3 cut(s) 218, 328, 484
Tru1I TTAA 2 cut(s) 483, 487
Tru9I TTAA 2 cut(s) 483, 487
TscAI CASTG 1 cut(s) 57
TseI GCWGC 3 cut(s) 47, 363, 409
TspRI CASTG 1 cut(s) 57
VspI ATTAAT 1 cut(s) 483
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XspI CTAG 2 cut(s) 290, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.