pycom13g08900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011343
Physical Location & Seq
Forward (+)
5931159 .. 5933689
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08900.2

Sequence Viewer

Length: 1239 bp
ATGAAATGTAAAGAAGCGAAAACTTTATGGGGCATATCTGAAATTCCGGCGAAAGTATTGACTCGTGTGCGGTATTTTAGTCTAAATAAATCAACGACCCAAATATCTCTCTCACCGTCACTTTTTCAGCGGGAATCCCATACCTTACTCCTCTCTCTCTTCCGCTCTGACTCTTCCCGGGACACGATGGCCGTGGTTATCGGAAACCTAGCTCTGCTACTAGACGTCACGTCGCCCAGGACCGTAATTCCAGACCGGAAGACTCGTCCGGTGGCGCTCGACACCCTTTTGAACCTGAGTCTGATCTTGCCGAAGCGGGACCCGCACAGTCACGCACACAACGGTTTTATCGCGGTAAAGGGGTTTGACTCGGACGGGGAGACTCGGAGCCAGCGAGTCGTGGCTCGGGGGAAGGCGAATTCGAAGGTAAACGGCGTGAACTTCGACAGGGACGAGGAGGGGAACGGGAATGGGTACGGGGACGGGGACGATCAGGAGCCGTTGGATTGGGAGAAGAAAATGCGGAAGAGGGTGAAGGAGATCGAGGAGAGGAGGGAGCTGGAGAAGAAGGCGGAGGAGATACAGAGCCGGATGGAGGAGGATTTTGAAGACGACGGCAGGGAGGAGACGGAGCAGGAGAAGCGGATGAGAGTGAGGAAAGAGCTGGAGAAGGTGGCTAAGGAGCAGGCGGAGCGGAGGGCCACGGCACAGTTGATGTTTGATTTGGGGCAGAAGGCGTATGGAAGGGGCATGTACGGCCGTGCCATTGAGTTTTTAGAAGGCGCGCTCACGATCATTCCTAGGCCCACGTTATTCGGTGGTGAGATACAAATTTGGCTTGCTATGGCCTACGAGGCTAATAACCGCCATACCGATTGCATTGAACTTTACCATCAATTGGAGAAGAAGCACCCGAGTGTCAGCATCCGGCGCCAAGCCGCAGAGCTTCGTTACATTTTGCAAGCGCCAAAGCTCAAGATATCCCAAGAGGAGATGGTAACCATACCACTCATTGGTTCCAGTTATGACAGCTATGCTGGAACGTGGAGTGATAAATACAAAGACAAGGAACCGATTAGCAGCGGAACAGTGACCAATCAGCTCTCTTCGTCTAAAGACTATTTCGGAGACTTTATGGTATGGCGACCTCCAATCGGTCTAGAGAAAAACCAAGCCTTTTGGATAGGTTTGACATTGTGGTTGGGTTTAGTTGGAGCTGCCCTCTTTATTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

413

Amino Acids

46.96

Weight (kDa)

7.72

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26580
fragaria_vesca FvH4_4g25530 FvH4_4g25530
malus_domestica MD13G1101900.v1.1 MD16G1102400.v1.1
prunus_persica Prupe.1G243900_v2.0.a1 Prupe.1G243900_v2.0.a1
pyrus_communis pycom13g08900 pycom16g08700
rosa_chinensis RchiOBHm_Chr4g0432921
rosa_laevigata RLG00000006801
rosa_multiflora Rmu_sc0001762.1_g000047
rosa_roxburghii Rroxscaffold_5G00374330
rosa_rugosa Rorug04G0263800 Rorug04G0263900
rosa_samantha Rh4AG317900 Rh4BG326100 Rh4CG341200 Rh4DG321200
rosa_wichuraiana Rw4G027640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 930
AccB7I CCANNNNNTGG 2 cut(s) 898, 1013
AccBSI CCGCTC 2 cut(s) 165, 694
AccII CGCG 2 cut(s) 353, 785
AcoI YGGCCR 2 cut(s) 189, 757
AcsI RAATTY 3 cut(s) 42, 418, 831
AcyI GRCGYC 2 cut(s) 225, 931
AfaI GTAC 2 cut(s) 476, 755
AfiI CCNNNNNNNGG 4 cut(s) 595, 898, 1013, 1154
AgsI TTSAA 4 cut(s) 292, 608, 884, 1232
AhdI GACNNNNNGTC 1 cut(s) 229
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 1 cut(s) 236
AleI CACNNNNGTG 1 cut(s) 915
AluBI AGCT 8 cut(s) 212, 559, 664, 946, 973, 1032, 1102, 1217
AluI AGCT 8 cut(s) 212, 559, 664, 946, 973, 1032, 1102, 1217
Alw26I GTCTC 3 cut(s) 374, 620, 1122
Ama87I CYCGRG 3 cut(s) 177, 405, 913
AoxI GGCC 5 cut(s) 189, 699, 757, 803, 846
ApeKI GCWGC 2 cut(s) 1080, 1217
ApoI RAATTY 3 cut(s) 42, 418, 831
AspA2I CCTAGG 1 cut(s) 800
AspLEI GCGC 5 cut(s) 277, 785, 787, 933, 967
AspS9I GGNCC 4 cut(s) 240, 319, 699, 804
AsuC2I CCSGG 2 cut(s) 178, 179
AsuHPI GGTGA 3 cut(s) 105, 544, 833
AsuII TTCGAA 1 cut(s) 422
AvaI CYCGRG 3 cut(s) 177, 405, 913
AvaII GGWCC 2 cut(s) 240, 319
AvrII CCTAGG 1 cut(s) 800
BanI GGYRCC 1 cut(s) 930
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 266, 615
BbvI GCAGC 2 cut(s) 1092, 1204
BccI CCATC 4 cut(s) 181, 586, 900, 988
BceAI ACGGC 7 cut(s) 176, 448, 484, 631, 720, 744, 772
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 2 cut(s) 178, 179
BcoDI GTCTC 3 cut(s) 374, 620, 1122
BfaI CTAG 4 cut(s) 209, 221, 801, 1160
BfoI RGCGCY 3 cut(s) 278, 934, 968
BglI GCCNNNNNGGC 1 cut(s) 854
BisI GCNGC 3 cut(s) 939, 1081, 1218
BlnI CCTAGG 1 cut(s) 800
BlsI GCNGC 3 cut(s) 940, 1082, 1219
Bme1390I CCNGG 3 cut(s) 178, 179, 238
Bme18I GGWCC 2 cut(s) 240, 319
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 3 cut(s) 177, 405, 913
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 4 cut(s) 240, 319, 699, 804
BmiI GGNNCC 7 cut(s) 320, 321, 389, 498, 932, 1018, 1071
BmrFI CCNGG 3 cut(s) 178, 179, 238
BmsI GCATC 1 cut(s) 933
BpiI GAAGAC 2 cut(s) 266, 615
BplI GAGNNNNNCTC 2 cut(s) 1206, 1238
BpmI CTGGAG 2 cut(s) 581, 686
Bpu10I CCTNAGC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 2 cut(s) 178, 179
BsaHI GRCGYC 2 cut(s) 225, 931
BsaJI CCNNGG 5 cut(s) 177, 192, 236, 702, 800
BsaWI WCCGGW 2 cut(s) 255, 268
Bsc4I CCNNNNNNNGG 4 cut(s) 595, 898, 1013, 1154
Bse1I ACTGG 1 cut(s) 1020
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 5 cut(s) 177, 192, 236, 702, 800
BseGI GGATG 3 cut(s) 597, 651, 924
BseLI CCNNNNNNNGG 4 cut(s) 595, 898, 1013, 1154
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 1020
BsePI GCGCGC 1 cut(s) 783
BseRI GAGGAG 8 cut(s) 140, 470, 560, 565, 590, 611, 638, 1004
BseX3I CGGCCG 1 cut(s) 757
BseXI GCAGC 2 cut(s) 1092, 1204
Bsh1236I CGCG 2 cut(s) 353, 785
Bsh1285I CGRYCG 1 cut(s) 760
BshFI GGCC 5 cut(s) 191, 701, 759, 805, 848
BshNI GGYRCC 1 cut(s) 930
BsiEI CGRYCG 1 cut(s) 760
BsiHKCI CYCGRG 3 cut(s) 177, 405, 913
BsiSI CCGG 6 cut(s) 47, 178, 256, 269, 589, 928
BslFI GGGAC 5 cut(s) 194, 332, 464, 494, 500
BslI CCNNNNNNNGG 4 cut(s) 595, 898, 1013, 1154
BsmAI GTCTC 3 cut(s) 374, 620, 1122
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 5 cut(s) 194, 332, 464, 494, 500
BsnI GGCC 5 cut(s) 191, 701, 759, 805, 848
BsoBI CYCGRG 3 cut(s) 177, 405, 913
Bsp119I TTCGAA 1 cut(s) 422
Bsp143I GATC 4 cut(s) 303, 490, 540, 792
BspANI GGCC 5 cut(s) 191, 701, 759, 805, 848
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 2 cut(s) 353, 785
BspLI GGNNCC 7 cut(s) 320, 321, 389, 498, 932, 1018, 1071
BspT104I TTCGAA 1 cut(s) 422
BspT107I GGYRCC 1 cut(s) 930
BsrBI CCGCTC 2 cut(s) 165, 694
BsrI ACTGG 1 cut(s) 1020
BssECI CCNNGG 5 cut(s) 177, 192, 236, 702, 800
BssHII GCGCGC 1 cut(s) 783
BssMI GATC 4 cut(s) 303, 490, 540, 792
BssNI GRCGYC 2 cut(s) 225, 931
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 800
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 6 cut(s) 117, 244, 329, 344, 711, 1090
Bst6I CTCTTC 4 cut(s) 164, 178, 521, 1111
BstACI GRCGYC 2 cut(s) 225, 931
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 5 cut(s) 392, 687, 785, 840, 963
BstDEI CTNAG 2 cut(s) 296, 678
BstDSI CCRYGG 2 cut(s) 192, 702
BstEII GGTNACC 1 cut(s) 997
BstF5I GGATG 3 cut(s) 597, 651, 924
BstFNI CGCG 2 cut(s) 353, 785
BstH2I RGCGCY 3 cut(s) 278, 934, 968
BstHHI GCGC 5 cut(s) 277, 785, 787, 933, 967
BstKTI GATC 4 cut(s) 306, 493, 543, 795
BstMAI GTCTC 3 cut(s) 374, 620, 1122
BstMBI GATC 4 cut(s) 303, 490, 540, 792
BstMCI CGRYCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 6 cut(s) 322, 640, 691, 756, 854, 930
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 754
BstPI GGTNACC 1 cut(s) 997
BstSCI CCNGG 3 cut(s) 176, 177, 236
BstUI CGCG 2 cut(s) 353, 785
BstV1I GCAGC 2 cut(s) 1092, 1204
BstV2I GAAGAC 2 cut(s) 266, 615
BstZI CGGCCG 1 cut(s) 757
BsuRI GGCC 5 cut(s) 191, 701, 759, 805, 848
BtgI CCRYGG 2 cut(s) 192, 702
BtrI CACGTC 1 cut(s) 231
BtsCI GGATG 3 cut(s) 597, 651, 924
BtsIMutI CAGTG 1 cut(s) 1095
Cac8I GCNNGC 5 cut(s) 392, 687, 785, 840, 963
CfoI GCGC 5 cut(s) 277, 785, 787, 933, 967
Cfr13I GGNCC 4 cut(s) 240, 319, 699, 804
Cfr9I CCCGGG 1 cut(s) 177
Csp6I GTAC 2 cut(s) 475, 754
CviAII CATG 1 cut(s) 751
CviQI GTAC 2 cut(s) 475, 754
DdeI CTNAG 2 cut(s) 296, 678
DinI GGCGCC 1 cut(s) 932
DpnI GATC 4 cut(s) 305, 492, 542, 794
DpnII GATC 4 cut(s) 303, 490, 540, 792
DriI GACNNNNNGTC 1 cut(s) 229
EaeI YGGCCR 2 cut(s) 189, 757
EagI CGGCCG 1 cut(s) 757
Eam1104I CTCTTC 4 cut(s) 164, 178, 521, 1111
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 4 cut(s) 164, 178, 521, 1111
EciI GGCGGA 2 cut(s) 587, 704
EclXI CGGCCG 1 cut(s) 757
Eco130I CCWWGG 1 cut(s) 800
Eco32I GATATC 1 cut(s) 981
Eco47I GGWCC 2 cut(s) 240, 319
Eco52I CGGCCG 1 cut(s) 757
Eco88I CYCGRG 3 cut(s) 177, 405, 913
Eco91I GGTNACC 1 cut(s) 997
EcoO109I RGGNCCY 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 997
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 981
EcoT14I CCWWGG 1 cut(s) 800
EgeI GGCGCC 1 cut(s) 932
EheI GGCGCC 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 800
Esp3I CGTCTC 1 cut(s) 620
FaeI CATG 1 cut(s) 754
FaqI GGGAC 5 cut(s) 194, 332, 464, 494, 500
FatI CATG 1 cut(s) 750
FauI CCCGC 3 cut(s) 123, 309, 330
Fnu4HI GCNGC 3 cut(s) 939, 1081, 1218
FokI GGATG 3 cut(s) 604, 658, 911
Fsp4HI GCNGC 3 cut(s) 939, 1081, 1218
FspBI CTAG 4 cut(s) 209, 221, 801, 1160
GlaI GCGC 5 cut(s) 276, 784, 786, 932, 966
GluI GCNGC 3 cut(s) 939, 1081, 1218
GsuI CTGGAG 2 cut(s) 581, 686
HaeII RGCGCY 3 cut(s) 278, 934, 968
HaeIII GGCC 5 cut(s) 191, 701, 759, 805, 848
HapII CCGG 6 cut(s) 47, 178, 256, 269, 589, 928
HhaI GCGC 5 cut(s) 277, 785, 787, 933, 967
Hin1I GRCGYC 2 cut(s) 225, 931
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 5 cut(s) 275, 783, 785, 931, 965
HinP1I GCGC 5 cut(s) 275, 783, 785, 931, 965
HinfI GANTC 8 cut(s) 61, 134, 170, 262, 298, 368, 382, 396
HpaII CCGG 6 cut(s) 47, 178, 256, 269, 589, 928
HphI GGTGA 3 cut(s) 105, 544, 833
Hpy166II GTNNAC 2 cut(s) 430, 439
Hpy188I TCNGA 7 cut(s) 40, 169, 203, 303, 373, 387, 1127
Hpy188III TCNNGA 5 cut(s) 251, 494, 790, 976, 1160
Hpy8I GTNNAC 2 cut(s) 430, 439
Hpy99I CGWCG 2 cut(s) 235, 617
HpyAV CCTTC 8 cut(s) 406, 418, 529, 562, 664, 727, 738, 773
HpyCH4III ACNGT 6 cut(s) 117, 244, 329, 344, 711, 1090
HpyCH4IV ACGT 4 cut(s) 225, 230, 809, 1043
HpyCH4V TGCA 2 cut(s) 879, 961
HpyF10VI GCNNNNNNNGC 6 cut(s) 322, 640, 691, 756, 854, 930
HpyF3I CTNAG 2 cut(s) 296, 678
HpySE526I ACGT 4 cut(s) 225, 230, 809, 1043
Hsp92I GRCGYC 2 cut(s) 225, 931
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 5 cut(s) 275, 783, 785, 931, 965
KasI GGCGCC 1 cut(s) 930
KflI GGGWCCC 1 cut(s) 319
Kzo9I GATC 4 cut(s) 303, 490, 540, 792
LmnI GCTCC 7 cut(s) 387, 496, 556, 631, 682, 691, 1214
Lsp1109I GCAGC 2 cut(s) 1092, 1204
LweI GCATC 1 cut(s) 933
MaeI CTAG 4 cut(s) 209, 221, 801, 1160
MaeII ACGT 4 cut(s) 225, 230, 809, 1043
MaeIII GTNAC 6 cut(s) 117, 226, 329, 950, 997, 1090
MalI GATC 4 cut(s) 305, 492, 542, 794
MbiI CCGCTC 2 cut(s) 165, 694
MboI GATC 4 cut(s) 303, 490, 540, 792
MboII GAAGA 9 cut(s) 151, 165, 271, 526, 538, 577, 620, 916, 1098
MfeI CAATTG 1 cut(s) 896
MluCI AATT 5 cut(s) 42, 246, 418, 831, 896
Mly113I GGCGCC 1 cut(s) 931
MlyI GAGTC 7 cut(s) 55, 164, 256, 307, 362, 376, 405
MmeI TCCRAC 2 cut(s) 483, 1192
MslI CAYNNNNRTG 1 cut(s) 915
MspA1I CMGCKG 2 cut(s) 130, 1083
MspI CCGG 6 cut(s) 47, 178, 256, 269, 589, 928
MspR9I CCNGG 3 cut(s) 178, 179, 238
MunI CAATTG 1 cut(s) 896
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 2 cut(s) 353, 785
MwoI GCNNNNNNNGC 6 cut(s) 322, 640, 691, 756, 854, 930
NarI GGCGCC 1 cut(s) 931
NciI CCSGG 2 cut(s) 178, 179
NdeII GATC 4 cut(s) 303, 490, 540, 792
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 7 cut(s) 320, 321, 389, 498, 932, 1018, 1071
NmuCI GTSAC 4 cut(s) 117, 226, 329, 1090
NspI RCATGY 1 cut(s) 754
NspV TTCGAA 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 915
PauI GCGCGC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 2 cut(s) 391, 450
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 2 cut(s) 898, 1013
PkrI GCNGC 3 cut(s) 940, 1082, 1219
PleI GAGTC 7 cut(s) 55, 164, 256, 306, 362, 376, 404
PluTI GGCGCC 1 cut(s) 934
PpsI GAGTC 7 cut(s) 55, 164, 256, 306, 362, 376, 404
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 997
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 7 cut(s) 320, 321, 389, 498, 932, 1018, 1071
PspPI GGNCC 4 cut(s) 240, 319, 699, 804
PspPPI RGGWCCY 1 cut(s) 319
PteI GCGCGC 1 cut(s) 783
RsaI GTAC 2 cut(s) 476, 755
RsaNI GTAC 2 cut(s) 475, 754
RseI CAYNNNNRTG 1 cut(s) 915
SatI GCNGC 3 cut(s) 939, 1081, 1218
Sau3AI GATC 4 cut(s) 303, 490, 540, 792
Sau96I GGNCC 4 cut(s) 240, 319, 699, 804
SchI GAGTC 7 cut(s) 55, 164, 256, 307, 362, 376, 405
ScrFI CCNGG 3 cut(s) 178, 179, 238
SfaNI GCATC 1 cut(s) 933
SfoI GGCGCC 1 cut(s) 932
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 2 cut(s) 240, 319
SmaI CCCGGG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 915
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
Sse9I AATT 5 cut(s) 42, 246, 418, 831, 896
SspDI GGCGCC 1 cut(s) 930
SspMI CTAG 4 cut(s) 209, 221, 801, 1160
StyD4I CCNGG 3 cut(s) 176, 177, 236
StyI CCWWGG 1 cut(s) 800
TaaI ACNGT 6 cut(s) 117, 244, 329, 344, 711, 1090
TaiI ACGT 4 cut(s) 228, 233, 812, 1046
TaqI TCGA 4 cut(s) 279, 422, 444, 543
TaqII GACCGA 1 cut(s) 1145
TasI AATT 5 cut(s) 42, 246, 418, 831, 896
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 1095
TseFI GTSAC 4 cut(s) 117, 226, 329, 1090
TseI GCWGC 2 cut(s) 1080, 1217
Tsp45I GTSAC 4 cut(s) 117, 226, 329, 1090
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 644
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 1 cut(s) 1095
Van91I CCANNNNNTGG 2 cut(s) 898, 1013
VpaK11BI GGWCC 2 cut(s) 240, 319
XapI RAATTY 3 cut(s) 42, 418, 831
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 1 cut(s) 754
XmaI CCCGGG 1 cut(s) 177
XmaJI CCTAGG 1 cut(s) 800
XspI CTAG 4 cut(s) 209, 221, 801, 1160
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.