Prupe.1G243900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011343
Physical Location & Seq
Reverse (-)
25747716 .. 25749997
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G243900.1

Sequence Viewer

Length: 1047 bp
ATGGCCGTTGTTCTCGGAAACCTAGCTCTGCTACTAGACGTGTCGTCGCCTAGGACCATAATACTAGACCGGAAGATTCGTCCGGTGGCGCTTGATGCTCTTTTGAACCTGAACTTGAACTTGCCTAAGAGGGACTCTCACAGTCACGCGCACAACGGCTTTATCGTGGCCAAGGGGTTTGACTCGGACGGGGAGACTCGGAGCCAACGAGTCGTGGCTCGGGGCAAAGCGAATTCTAAAGTAAACGGCGTGGACTTTGACAGGGACGAGGAGGGTAACGGTAACGGGAATGGGGAAGATCAGGATCCGTTCGATTGGGAGAAGGAAATGCGGAAGAGGGTGAAGGAGATCGAAGAGAGGAAGGAGTTGGTGAAGAAAGCCGAGGAATTGCAGAGCCAGATAGAGGAGGATTATGAAGACGACGGCAGAGAAGAGACGGAGCAAGAGAAGCGGATGAGAGTGAGGAAAGAGCTGGAAAAGGTGGCTAAGGAGCAAGCAGAGCGGAGAGCCACGGCGCAGTTGATGTTTGAGTTGGGGCAGAAGGCTTATGGAAGGGGCATGTACGGTCGTGCCATTGAGTTTTTAGAAGGCGCACTCACAATCATTCCTAGGCCTACGTTATTTGGTGGTGAGATACAAATTTGGCTTGCTATGGCCTATGAGGCTAATAACCGCCATGACGATTGCATTGATCTTTACATGCTATTGGAGAAGAAGCACCCCAGTGTCAGCATCAGACGCCAAGCAGCAGAGCTTCGCTACATTTTGCAAGCGCCAAAGCTCAAGATAACCCAAGAAGAGATGGTAACCATACCACTCATTGGTTCTAGTTATGACAGCTACGCCGGAACGTGGAGTGATAAATACAAGGACAAGGATGAGAGGAGCAGTGGGACAATAACCAATCAGCTCCCATCTTCGAAAGACTATTTCGGGGACTTCATGGTATGGCGACCTCCAATTGGACTGGAGAAAAACCAAGTCTTTTGGATAAGTTTGACGTTGTGGTTGGGTTTGGTTGGAGCTGCCCTCTTTCTTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

39.76

Weight (kDa)

5.53

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26580
fragaria_vesca FvH4_4g25530 FvH4_4g25530
malus_domestica MD13G1101900.v1.1 MD16G1102400.v1.1
prunus_persica Prupe.1G243900_v2.0.a1 Prupe.1G243900_v2.0.a1
pyrus_communis pycom13g08900 pycom16g08700
rosa_chinensis RchiOBHm_Chr4g0432921
rosa_laevigata RLG00000006801
rosa_multiflora Rmu_sc0001762.1_g000047
rosa_roxburghii Rroxscaffold_5G00374330
rosa_rugosa Rorug04G0263800 Rorug04G0263900
rosa_samantha Rh4AG317900 Rh4BG326100 Rh4CG341200 Rh4DG321200
rosa_wichuraiana Rw4G027640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 821
AccBSI CCGCTC 1 cut(s) 502
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 331, 451, 502, 673
AclWI GGATC 2 cut(s) 299, 312
AcoI YGGCCR 2 cut(s) 3, 168
AcsI RAATTY 2 cut(s) 232, 639
AcyI GRCGYC 1 cut(s) 739
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 4 cut(s) 403, 821, 852, 962
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 3 cut(s) 106, 118, 1040
AhdI GACNNNNNGTC 1 cut(s) 43
AjiI CACGTC 1 cut(s) 40
AleI CACNNNNGTG 1 cut(s) 723
AluBI AGCT 7 cut(s) 26, 472, 754, 781, 840, 910, 1025
AluI AGCT 7 cut(s) 26, 472, 754, 781, 840, 910, 1025
Alw26I GTCTC 2 cut(s) 188, 428
AlwI GGATC 2 cut(s) 299, 312
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 4 cut(s) 3, 168, 611, 654
ApeKI GCWGC 2 cut(s) 746, 1025
ApoI RAATTY 2 cut(s) 232, 639
AspA2I CCTAGG 2 cut(s) 50, 608
AspLEI GCGC 5 cut(s) 91, 151, 517, 593, 775
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 3 cut(s) 352, 382, 641
AsuII TTCGAA 1 cut(s) 920
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 54
AvrII CCTAGG 2 cut(s) 50, 608
BalI TGGCCA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 758, 1012
BccI CCATC 2 cut(s) 796, 922
BceAI ACGGC 4 cut(s) 172, 262, 439, 528
BcoDI GTCTC 2 cut(s) 188, 428
BfaI CTAG 6 cut(s) 23, 35, 51, 65, 609, 828
BfoI RGCGCY 2 cut(s) 92, 776
BglI GCCNNNNNGGC 1 cut(s) 662
BisI GCNGC 2 cut(s) 747, 1026
BlnI CCTAGG 2 cut(s) 50, 608
BlsI GCNGC 2 cut(s) 748, 1027
Bme18I GGWCC 1 cut(s) 54
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 203, 306
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 2 cut(s) 85, 741
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 423
BplI GAGNNNNNCTC 4 cut(s) 121, 153, 1014, 1046
BpmI CTGGAG 1 cut(s) 989
Bpu10I CCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 767
BsaBI GATNNNNATC 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 739
BsaJI CCNNGG 5 cut(s) 50, 171, 381, 510, 608
BsaWI WCCGGW 2 cut(s) 69, 82
Bsc4I CCNNNNNNNGG 4 cut(s) 403, 821, 852, 962
Bse1I ACTGG 2 cut(s) 723, 972
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 5 cut(s) 50, 171, 381, 510, 608
BseGI GGATG 2 cut(s) 459, 883
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 4 cut(s) 403, 821, 852, 962
BseNI ACTGG 2 cut(s) 723, 972
BseRI GAGGAG 3 cut(s) 284, 419, 898
BseXI GCAGC 2 cut(s) 758, 1012
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 4 cut(s) 5, 170, 613, 656
BsiEI CGRYCG 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 3 cut(s) 70, 83, 846
BslFI GGGAC 4 cut(s) 146, 278, 907, 950
BslI CCNNNNNNNGG 4 cut(s) 403, 821, 852, 962
BsmAI GTCTC 2 cut(s) 188, 428
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 4 cut(s) 146, 278, 907, 950
BsnI GGCC 4 cut(s) 5, 170, 613, 656
BsoBI CYCGRG 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 920
Bsp143I GATC 4 cut(s) 298, 304, 348, 691
BspACI CCGC 4 cut(s) 331, 451, 502, 673
BspANI GGCC 4 cut(s) 5, 170, 613, 656
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 203, 306
BspPI GGATC 2 cut(s) 299, 312
BspT104I TTCGAA 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 502
BsrI ACTGG 2 cut(s) 723, 972
BssECI CCNNGG 5 cut(s) 50, 171, 381, 510, 608
BssMI GATC 4 cut(s) 298, 304, 348, 691
BssNI GRCGYC 1 cut(s) 739
BssT1I CCWWGG 3 cut(s) 50, 171, 608
Bst4CI ACNGT 3 cut(s) 143, 281, 566
Bst6I CTCTTC 4 cut(s) 329, 348, 426, 792
BstACI GRCGYC 1 cut(s) 739
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 495, 648, 771
BstDEI CTNAG 2 cut(s) 126, 486
BstDSI CCRYGG 1 cut(s) 510
BstEII GGTNACC 1 cut(s) 805
BstF5I GGATG 2 cut(s) 459, 883
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 2 cut(s) 92, 776
BstHHI GCGC 5 cut(s) 91, 151, 517, 593, 775
BstKTI GATC 4 cut(s) 301, 307, 351, 694
BstMAI GTCTC 2 cut(s) 188, 428
BstMBI GATC 4 cut(s) 298, 304, 348, 691
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 5 cut(s) 95, 448, 499, 662, 738
BstNSI RCATGY 2 cut(s) 562, 703
BstPI GGTNACC 1 cut(s) 805
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 758, 1012
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 4 cut(s) 5, 170, 613, 656
BtgI CCRYGG 1 cut(s) 510
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 459, 883
BtsI GCAGTG 1 cut(s) 895
BtsIMutI CAGTG 2 cut(s) 730, 895
Cac8I GCNNGC 3 cut(s) 495, 648, 771
CfoI GCGC 5 cut(s) 91, 151, 517, 593, 775
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 747
Csp6I GTAC 1 cut(s) 562
CviAII CATG 4 cut(s) 559, 677, 700, 943
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 2 cut(s) 126, 486
DpnI GATC 4 cut(s) 300, 306, 350, 693
DpnII GATC 4 cut(s) 298, 304, 348, 691
DriI GACNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 2 cut(s) 3, 168
Eam1104I CTCTTC 4 cut(s) 329, 348, 426, 792
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 4 cut(s) 329, 348, 426, 792
Eco130I CCWWGG 3 cut(s) 50, 171, 608
Eco147I AGGCCT 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 219
Eco91I GGTNACC 1 cut(s) 805
EcoO65I GGTNACC 1 cut(s) 805
EcoRI GAATTC 1 cut(s) 232
EcoT14I CCWWGG 3 cut(s) 50, 171, 608
ErhI CCWWGG 3 cut(s) 50, 171, 608
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 4 cut(s) 562, 680, 703, 946
FaqI GGGAC 4 cut(s) 146, 278, 907, 950
FatI CATG 4 cut(s) 558, 676, 699, 942
Fnu4HI GCNGC 2 cut(s) 747, 1026
FokI GGATG 2 cut(s) 466, 890
Fsp4HI GCNGC 2 cut(s) 747, 1026
FspBI CTAG 6 cut(s) 23, 35, 51, 65, 609, 828
GlaI GCGC 5 cut(s) 90, 150, 516, 592, 774
GluI GCNGC 2 cut(s) 747, 1026
GsuI CTGGAG 1 cut(s) 989
HaeII RGCGCY 2 cut(s) 92, 776
HaeIII GGCC 4 cut(s) 5, 170, 613, 656
HapII CCGG 3 cut(s) 70, 83, 846
HgaI GACGC 1 cut(s) 747
HhaI GCGC 5 cut(s) 91, 151, 517, 593, 775
Hin1I GRCGYC 1 cut(s) 739
Hin1II CATG 4 cut(s) 562, 680, 703, 946
Hin6I GCGC 5 cut(s) 89, 149, 515, 591, 773
HinP1I GCGC 5 cut(s) 89, 149, 515, 591, 773
HinfI GANTC 5 cut(s) 76, 134, 182, 196, 210
HpaII CCGG 3 cut(s) 70, 83, 846
HphI GGTGA 3 cut(s) 352, 382, 641
Hpy166II GTNNAC 2 cut(s) 244, 253
Hpy188I TCNGA 4 cut(s) 17, 187, 201, 737
Hpy188III TCNNGA 2 cut(s) 302, 784
Hpy8I GTNNAC 2 cut(s) 244, 253
Hpy99I CGWCG 2 cut(s) 49, 425
HpyAV CCTTC 6 cut(s) 316, 337, 355, 535, 546, 581
HpyCH4III ACNGT 3 cut(s) 143, 281, 566
HpyCH4IV ACGT 4 cut(s) 39, 617, 851, 1001
HpyCH4V TGCA 3 cut(s) 391, 687, 769
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 448, 499, 662, 738
HpyF3I CTNAG 2 cut(s) 126, 486
HpySE526I ACGT 4 cut(s) 39, 617, 851, 1001
Hsp92I GRCGYC 1 cut(s) 739
Hsp92II CATG 4 cut(s) 562, 680, 703, 946
HspAI GCGC 5 cut(s) 89, 149, 515, 591, 773
Kzo9I GATC 4 cut(s) 298, 304, 348, 691
LmnI GCTCC 6 cut(s) 201, 439, 490, 885, 915, 1022
Lsp1109I GCAGC 2 cut(s) 758, 1012
LweI GCATC 2 cut(s) 85, 741
MaeI CTAG 6 cut(s) 23, 35, 51, 65, 609, 828
MaeII ACGT 4 cut(s) 39, 617, 851, 1001
MaeIII GTNAC 4 cut(s) 143, 275, 281, 805
MalI GATC 4 cut(s) 300, 306, 350, 693
MbiI CCGCTC 1 cut(s) 502
MboI GATC 4 cut(s) 298, 304, 348, 691
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 4 cut(s) 232, 386, 639, 960
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 4 cut(s) 128, 176, 190, 219
MmeI TCCRAC 1 cut(s) 1000
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 723
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 3 cut(s) 70, 83, 846
MunI CAATTG 1 cut(s) 960
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 5 cut(s) 95, 448, 499, 662, 738
NdeII GATC 4 cut(s) 298, 304, 348, 691
NlaIII CATG 4 cut(s) 562, 680, 703, 946
NlaIV GGNNCC 2 cut(s) 203, 306
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 2 cut(s) 562, 703
NspV TTCGAA 1 cut(s) 920
OliI CACNNNNGTG 1 cut(s) 723
PceI AGGCCT 1 cut(s) 613
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 205
PfeI GAWTC 1 cut(s) 76
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 2 cut(s) 748, 1027
PleI GAGTC 4 cut(s) 128, 176, 190, 218
PpsI GAGTC 4 cut(s) 128, 176, 190, 218
PspEI GGTNACC 1 cut(s) 805
PspN4I GGNNCC 2 cut(s) 203, 306
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 1 cut(s) 723
SatI GCNGC 2 cut(s) 747, 1026
Sau3AI GATC 4 cut(s) 298, 304, 348, 691
Sau96I GGNCC 1 cut(s) 54
SchI GAGTC 4 cut(s) 128, 176, 190, 219
SfaNI GCATC 2 cut(s) 85, 741
SfuI TTCGAA 1 cut(s) 920
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 4 cut(s) 232, 386, 639, 960
SseBI AGGCCT 1 cut(s) 613
SsiI CCGC 4 cut(s) 331, 451, 502, 673
SspMI CTAG 6 cut(s) 23, 35, 51, 65, 609, 828
StuI AGGCCT 1 cut(s) 613
StyI CCWWGG 3 cut(s) 50, 171, 608
TaaI ACNGT 3 cut(s) 143, 281, 566
TaiI ACGT 4 cut(s) 42, 620, 854, 1004
TaqI TCGA 3 cut(s) 312, 351, 920
TasI AATT 4 cut(s) 232, 386, 639, 960
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 2 cut(s) 730, 895
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 2 cut(s) 746, 1025
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 429, 931
TspGWI ACGGA 2 cut(s) 297, 452
TspRI CASTG 2 cut(s) 730, 895
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 2 cut(s) 232, 639
XceI RCATGY 2 cut(s) 562, 703
XmaJI CCTAGG 2 cut(s) 50, 608
XspI CTAG 6 cut(s) 23, 35, 51, 65, 609, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.