pycom16g08700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011343
Physical Location & Seq
Forward (+)
5800526 .. 5802689
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08700.4

Sequence Viewer

Length: 1218 bp
ATGATCCAGAGCGCCCAGATTATTAACGTAATTACGTATCAAATTAAGGGTATTTCCGTCTATATAAATCAACGACCCAAATCTCTCTCCCACTGTCTTTTCAGCGGGAACCCCGTATCTTACTTTTCTCTCCTCTTCTCTGACTCTTTCCGGAACACGATGGCCGTGGTTATCGGAAACCTAGCTCTGCTACTAGACGTCACGTCGCCTAGGACCACGGTTCCTGACCGGAAGACCCGTCCGGTGGCGCTCGACGCCCTTTTGAACATGAGCCTGACCTTGCCGAAGCGAGACCCGCATAGTCACGCACACAACGGGTTTATCGCGGTCAAGGGATTTGACTCGGACGGGGAGACTCGGAGCCAGCGAGTCGTGGCTCGGGGAAAAGCGAATTCGAAAGTAAACGGCGTGAACTACGACAGGGACGAGGAAGGGAACGGGAATGGGTACGGGGACGGGGACGGGGACGATCAGGAGCCCTTGGATTGGGAGAAGGAAATGCGGAAGAGGTTGAAGGAGATCGAGGAGAGGAGGGAGTTGGAGAAGAAGGCGGAGGAGATACAGAGCCGCATGGAGGAGGATTTCGAAGACGGCGGCAGGGAAGAGACGGAGCAGGAGAAGCGGATGAGAGTGAGGAAAGAGCTCGAAAAGGTGGCTAAGGAGCAGGCGGAGCGGAGAGCCACCGCACAGTTGATGTTCGATTTGGGGCAGAAGGCTTATGGAAGGGGCATGTACGGCCGTGCCATTGAGTTTTTAGAAGGCGCCCTCACGATCATCCCTAGGCCCACGTTATTTGGTGGTGAGATACAAATTTGGCTTGCTATGGCCTACGAGGCTAATAACCGCCATACCGATTGCATTGAACTTTACCATCAATTGGAGAAGAAACACCCGAGCGCCAGCATCCGGCGCCAAGCAGCAGAGCTTCGGTACATTTTGCAAGCACCAAAGCTCAAGATAACACAAGAAGAGATGGTAACCATACCACTCATTGGTTCTAGTTATGACAGCTATGCTGGAACGTGGAGTGATAAATACAAAGACAAAGAACCGATTAGCAGCGGGACAGTGACCAATCAGATCCCGTCGTCTAGAGACTATTTCGGAGACTTTATGGTATGGCGACCTCCAATCGGACTGGAAAAAAACCAAGCGTTTTGGATAGGTTTGGCATTGTGGTTGGGTTTAGTTGGAGCTGCGCTCTTTATTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.98

Weight (kDa)

6.25

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G26580
fragaria_vesca FvH4_4g25530 FvH4_4g25530
malus_domestica MD13G1101900.v1.1 MD16G1102400.v1.1
prunus_persica Prupe.1G243900_v2.0.a1 Prupe.1G243900_v2.0.a1
pyrus_communis pycom13g08900 pycom16g08700
rosa_chinensis RchiOBHm_Chr4g0432921
rosa_laevigata RLG00000006801
rosa_multiflora Rmu_sc0001762.1_g000047
rosa_roxburghii Rroxscaffold_5G00374330
rosa_rugosa Rorug04G0263800 Rorug04G0263900
rosa_samantha Rh4AG317900 Rh4BG326100 Rh4CG341200 Rh4DG321200
rosa_wichuraiana Rw4G027640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AccB1I GGYRCC 2 cut(s) 761, 909
AccB7I CCANNNNNTGG 2 cut(s) 877, 992
AccBSI CCGCTC 1 cut(s) 673
AccII CGCG 1 cut(s) 326
AccIII TCCGGA 1 cut(s) 150
AclWI GGATC 1 cut(s) 1075
AcoI YGGCCR 2 cut(s) 162, 736
AcsI RAATTY 2 cut(s) 391, 810
AcyI GRCGYC 4 cut(s) 198, 255, 762, 910
AfaI GTAC 3 cut(s) 449, 734, 932
AfiI CCNNNNNNNGG 7 cut(s) 244, 486, 574, 877, 906, 992, 1133
AgsI TTSAA 4 cut(s) 265, 514, 863, 1211
AhdI GACNNNNNGTC 1 cut(s) 202
AjiI CACGTC 1 cut(s) 204
AluBI AGCT 6 cut(s) 185, 643, 925, 952, 1011, 1196
AluI AGCT 6 cut(s) 185, 643, 925, 952, 1011, 1196
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 5 cut(s) 285, 347, 599, 1089, 1101
AlwI GGATC 1 cut(s) 1075
Ama87I CYCGRG 2 cut(s) 378, 892
Aor13HI TCCGGA 1 cut(s) 150
AoxI GGCC 4 cut(s) 162, 736, 782, 825
ApeKI GCWGC 3 cut(s) 917, 1059, 1196
ApoI RAATTY 2 cut(s) 391, 810
AspA2I CCTAGG 2 cut(s) 209, 779
AspLEI GCGC 6 cut(s) 14, 250, 764, 899, 912, 1201
AspS9I GGNCC 2 cut(s) 213, 783
AsuHPI GGTGA 1 cut(s) 812
AsuII TTCGAA 2 cut(s) 395, 585
AvaI CYCGRG 2 cut(s) 378, 892
AvaII GGWCC 1 cut(s) 213
AvrII CCTAGG 2 cut(s) 209, 779
BanI GGYRCC 2 cut(s) 761, 909
BanII GRGCYC 2 cut(s) 480, 645
BbsI GAAGAC 2 cut(s) 239, 594
Bbv12I GWGCWC 1 cut(s) 645
BbvI GCAGC 3 cut(s) 929, 1071, 1183
BccI CCATC 3 cut(s) 154, 879, 967
BceAI ACGGC 5 cut(s) 149, 421, 607, 723, 751
BcoDI GTCTC 5 cut(s) 285, 347, 599, 1089, 1101
BfaI CTAG 6 cut(s) 182, 194, 210, 780, 999, 1092
BfoI RGCGCY 5 cut(s) 15, 251, 765, 900, 913
BglI GCCNNNNNGGC 1 cut(s) 833
BisI GCNGC 5 cut(s) 568, 595, 918, 1060, 1197
BlnI CCTAGG 2 cut(s) 209, 779
BlsI GCNGC 5 cut(s) 569, 596, 919, 1061, 1198
Bme18I GGWCC 1 cut(s) 213
BmeRI GACNNNNNGTC 1 cut(s) 202
BmeT110I CYCGRG 2 cut(s) 378, 892
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 2 cut(s) 213, 783
BmiI GGNNCC 6 cut(s) 110, 222, 362, 477, 763, 911
BmsI GCATC 1 cut(s) 912
BpiI GAAGAC 2 cut(s) 239, 594
BplI GAGNNNNNCTC 2 cut(s) 1185, 1217
Bpu10I CCTNAGC 1 cut(s) 657
Bpu14I TTCGAA 2 cut(s) 395, 585
BpuEI CTTGAG 1 cut(s) 938
BsaAI YACGTR 1 cut(s) 36
BsaHI GRCGYC 4 cut(s) 198, 255, 762, 910
BsaI GGTCTC 1 cut(s) 285
BsaJI CCNNGG 5 cut(s) 165, 209, 216, 480, 779
BsaWI WCCGGW 3 cut(s) 150, 228, 241
Bsc4I CCNNNNNNNGG 7 cut(s) 244, 486, 574, 877, 906, 992, 1133
Bse1I ACTGG 1 cut(s) 1143
BseAI TCCGGA 1 cut(s) 150
BseDI CCNNGG 5 cut(s) 165, 209, 216, 480, 779
BseGI GGATG 3 cut(s) 630, 774, 903
BseLI CCNNNNNNNGG 7 cut(s) 244, 486, 574, 877, 906, 992, 1133
BseNI ACTGG 1 cut(s) 1143
BseRI GAGGAG 5 cut(s) 122, 539, 544, 569, 590
BseX3I CGGCCG 1 cut(s) 736
BseXI GCAGC 3 cut(s) 929, 1071, 1183
Bsh1236I CGCG 1 cut(s) 326
Bsh1285I CGRYCG 1 cut(s) 739
BshFI GGCC 4 cut(s) 164, 738, 784, 827
BshNI GGYRCC 2 cut(s) 761, 909
BsiEI CGRYCG 1 cut(s) 739
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 2 cut(s) 378, 892
BsiSI CCGG 4 cut(s) 151, 229, 242, 907
BslFI GGGAC 5 cut(s) 437, 467, 473, 479, 1078
BslI CCNNNNNNNGG 7 cut(s) 244, 486, 574, 877, 906, 992, 1133
BsmAI GTCTC 5 cut(s) 285, 347, 599, 1089, 1101
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 5 cut(s) 437, 467, 473, 479, 1078
BsnI GGCC 4 cut(s) 164, 738, 784, 827
Bso31I GGTCTC 1 cut(s) 285
BsoBI CYCGRG 2 cut(s) 378, 892
Bsp119I TTCGAA 2 cut(s) 395, 585
Bsp1286I GDGCHC 2 cut(s) 480, 645
Bsp13I TCCGGA 1 cut(s) 150
Bsp143I GATC 5 cut(s) 3, 469, 519, 771, 1080
BspANI GGCC 4 cut(s) 164, 738, 784, 827
BspEI TCCGGA 1 cut(s) 150
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 6 cut(s) 110, 222, 362, 477, 763, 911
BspPI GGATC 1 cut(s) 1075
BspT104I TTCGAA 2 cut(s) 395, 585
BspT107I GGYRCC 2 cut(s) 761, 909
BspTNI GGTCTC 1 cut(s) 285
BsrBI CCGCTC 1 cut(s) 673
BsrI ACTGG 1 cut(s) 1143
BssECI CCNNGG 5 cut(s) 165, 209, 216, 480, 779
BssMI GATC 5 cut(s) 3, 469, 519, 771, 1080
BssNI GRCGYC 4 cut(s) 198, 255, 762, 910
BssT1I CCWWGG 3 cut(s) 209, 480, 779
Bst4CI ACNGT 4 cut(s) 95, 220, 690, 1069
Bst6I CTCTTC 4 cut(s) 140, 500, 597, 963
BstACI GRCGYC 4 cut(s) 198, 255, 762, 910
BstBAI YACGTR 1 cut(s) 36
BstBI TTCGAA 2 cut(s) 395, 585
BstC8I GCNNGC 5 cut(s) 365, 666, 819, 901, 942
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 2 cut(s) 165, 216
BstEII GGTNACC 1 cut(s) 976
BstF5I GGATG 3 cut(s) 630, 774, 903
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 5 cut(s) 15, 251, 765, 900, 913
BstHHI GCGC 6 cut(s) 14, 250, 764, 899, 912, 1201
BstKTI GATC 5 cut(s) 6, 472, 522, 774, 1083
BstMAI GTCTC 5 cut(s) 285, 347, 599, 1089, 1101
BstMBI GATC 5 cut(s) 3, 469, 519, 771, 1080
BstMCI CGRYCG 1 cut(s) 739
BstMWI GCNNNNNNNGC 7 cut(s) 254, 295, 619, 670, 735, 833, 909
BstNSI RCATGY 1 cut(s) 733
BstPI GGTNACC 1 cut(s) 976
BstSNI TACGTA 1 cut(s) 36
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 929, 1071, 1183
BstV2I GAAGAC 2 cut(s) 239, 594
BstX2I RGATCY 1 cut(s) 1080
BstYI RGATCY 1 cut(s) 1080
BstZI CGGCCG 1 cut(s) 736
BsuRI GGCC 4 cut(s) 164, 738, 784, 827
BtgI CCRYGG 2 cut(s) 165, 216
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 3 cut(s) 630, 774, 903
BtsIMutI CAGTG 2 cut(s) 91, 1074
Cac8I GCNNGC 5 cut(s) 365, 666, 819, 901, 942
CfoI GCGC 6 cut(s) 14, 250, 764, 899, 912, 1201
Cfr13I GGNCC 2 cut(s) 213, 783
CseI GACGC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 448, 733, 931
CspCI CAANNNNNGTGG 2 cut(s) 775, 810
CviAII CATG 3 cut(s) 268, 571, 730
CviQI GTAC 3 cut(s) 448, 733, 931
DdeI CTNAG 1 cut(s) 657
DinI GGCGCC 2 cut(s) 763, 911
DpnI GATC 5 cut(s) 5, 471, 521, 773, 1082
DpnII GATC 5 cut(s) 3, 469, 519, 771, 1080
DriI GACNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 2 cut(s) 162, 736
EagI CGGCCG 1 cut(s) 736
Eam1104I CTCTTC 4 cut(s) 140, 500, 597, 963
Eam1105I GACNNNNNGTC 1 cut(s) 202
EarI CTCTTC 4 cut(s) 140, 500, 597, 963
EciI GGCGGA 2 cut(s) 566, 683
Ecl136II GAGCTC 1 cut(s) 643
EclXI CGGCCG 1 cut(s) 736
Eco105I TACGTA 1 cut(s) 36
Eco130I CCWWGG 3 cut(s) 209, 480, 779
Eco24I GRGCYC 2 cut(s) 480, 645
Eco31I GGTCTC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 213
Eco52I CGGCCG 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 643
Eco88I CYCGRG 2 cut(s) 378, 892
Eco91I GGTNACC 1 cut(s) 976
EcoICRI GAGCTC 1 cut(s) 643
EcoO65I GGTNACC 1 cut(s) 976
EcoRI GAATTC 1 cut(s) 391
EcoT14I CCWWGG 3 cut(s) 209, 480, 779
EcoT38I GRGCYC 2 cut(s) 480, 645
EgeI GGCGCC 2 cut(s) 763, 911
EheI GGCGCC 2 cut(s) 763, 911
ErhI CCWWGG 3 cut(s) 209, 480, 779
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 3 cut(s) 271, 574, 733
FaqI GGGAC 5 cut(s) 437, 467, 473, 479, 1078
FatI CATG 3 cut(s) 267, 570, 729
FauI CCCGC 3 cut(s) 98, 303, 1055
Fnu4HI GCNGC 5 cut(s) 568, 595, 918, 1060, 1197
FokI GGATG 3 cut(s) 637, 761, 890
FriOI GRGCYC 2 cut(s) 480, 645
Fsp4HI GCNGC 5 cut(s) 568, 595, 918, 1060, 1197
FspBI CTAG 6 cut(s) 182, 194, 210, 780, 999, 1092
GlaI GCGC 6 cut(s) 13, 249, 763, 898, 911, 1200
GluI GCNGC 5 cut(s) 568, 595, 918, 1060, 1197
HaeII RGCGCY 5 cut(s) 15, 251, 765, 900, 913
HaeIII GGCC 4 cut(s) 164, 738, 784, 827
HapII CCGG 4 cut(s) 151, 229, 242, 907
HgaI GACGC 1 cut(s) 263
HhaI GCGC 6 cut(s) 14, 250, 764, 899, 912, 1201
Hin1I GRCGYC 4 cut(s) 198, 255, 762, 910
Hin1II CATG 3 cut(s) 271, 574, 733
Hin6I GCGC 6 cut(s) 12, 248, 762, 897, 910, 1199
HinP1I GCGC 6 cut(s) 12, 248, 762, 897, 910, 1199
HinfI GANTC 4 cut(s) 143, 341, 355, 369
HpaII CCGG 4 cut(s) 151, 229, 242, 907
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 2 cut(s) 403, 412
Hpy188I TCNGA 7 cut(s) 142, 176, 346, 360, 1080, 1106, 1136
Hpy188III TCNNGA 7 cut(s) 7, 151, 224, 473, 769, 955, 1092
Hpy8I GTNNAC 2 cut(s) 403, 412
Hpy99I CGWCG 3 cut(s) 208, 257, 1090
HpyAV CCTTC 7 cut(s) 425, 487, 508, 541, 706, 717, 752
HpyCH4III ACNGT 4 cut(s) 95, 220, 690, 1069
HpyCH4IV ACGT 6 cut(s) 27, 35, 198, 203, 788, 1022
HpyCH4V TGCA 2 cut(s) 858, 940
HpyF10VI GCNNNNNNNGC 7 cut(s) 254, 295, 619, 670, 735, 833, 909
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 6 cut(s) 27, 35, 198, 203, 788, 1022
Hsp92I GRCGYC 4 cut(s) 198, 255, 762, 910
Hsp92II CATG 3 cut(s) 271, 574, 733
HspAI GCGC 6 cut(s) 12, 248, 762, 897, 910, 1199
KasI GGCGCC 2 cut(s) 761, 909
Kpn2I TCCGGA 1 cut(s) 150
Kzo9I GATC 5 cut(s) 3, 469, 519, 771, 1080
LmnI GCTCC 6 cut(s) 360, 475, 610, 661, 670, 1193
Lsp1109I GCAGC 3 cut(s) 929, 1071, 1183
LweI GCATC 1 cut(s) 912
MaeI CTAG 6 cut(s) 182, 194, 210, 780, 999, 1092
MaeII ACGT 6 cut(s) 27, 35, 198, 203, 788, 1022
MaeIII GTNAC 4 cut(s) 199, 302, 976, 1069
MalI GATC 5 cut(s) 5, 471, 521, 773, 1082
MbiI CCGCTC 1 cut(s) 673
MboI GATC 5 cut(s) 3, 469, 519, 771, 1080
MboII GAAGA 8 cut(s) 127, 244, 517, 556, 599, 614, 895, 980
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 1 cut(s) 1080
MhlI GDGCHC 2 cut(s) 480, 645
MluCI AATT 5 cut(s) 30, 42, 391, 810, 875
Mly113I GGCGCC 2 cut(s) 762, 910
MlyI GAGTC 4 cut(s) 137, 335, 349, 378
MmeI TCCRAC 2 cut(s) 519, 1171
MroI TCCGGA 1 cut(s) 150
MseI TTAA 2 cut(s) 24, 45
MspA1I CMGCKG 2 cut(s) 105, 1062
MspI CCGG 4 cut(s) 151, 229, 242, 907
MunI CAATTG 1 cut(s) 875
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 7 cut(s) 254, 295, 619, 670, 735, 833, 909
NarI GGCGCC 2 cut(s) 762, 910
NdeII GATC 5 cut(s) 3, 469, 519, 771, 1080
NlaIII CATG 3 cut(s) 271, 574, 733
NlaIV GGNNCC 6 cut(s) 110, 222, 362, 477, 763, 911
NmuCI GTSAC 3 cut(s) 199, 302, 1069
NspI RCATGY 1 cut(s) 733
NspV TTCGAA 2 cut(s) 395, 585
PcsI WCGNNNNNNNCGW 2 cut(s) 364, 423
PflMI CCANNNNNTGG 2 cut(s) 877, 992
PkrI GCNGC 5 cut(s) 569, 596, 919, 1061, 1198
PleI GAGTC 4 cut(s) 137, 335, 349, 377
PluTI GGCGCC 2 cut(s) 765, 913
PpsI GAGTC 4 cut(s) 137, 335, 349, 377
Ppu21I YACGTR 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 645
PspEI GGTNACC 1 cut(s) 976
PspN4I GGNNCC 6 cut(s) 110, 222, 362, 477, 763, 911
PspPI GGNCC 2 cut(s) 213, 783
PsuI RGATCY 1 cut(s) 1080
RsaI GTAC 3 cut(s) 449, 734, 932
RsaNI GTAC 3 cut(s) 448, 733, 931
SacI GAGCTC 1 cut(s) 645
SaqAI TTAA 2 cut(s) 24, 45
SatI GCNGC 5 cut(s) 568, 595, 918, 1060, 1197
Sau3AI GATC 5 cut(s) 3, 469, 519, 771, 1080
Sau96I GGNCC 2 cut(s) 213, 783
SchI GAGTC 4 cut(s) 137, 335, 349, 378
SduI GDGCHC 2 cut(s) 480, 645
SfaNI GCATC 1 cut(s) 912
SfoI GGCGCC 2 cut(s) 763, 911
SfuI TTCGAA 2 cut(s) 395, 585
SinI GGWCC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 5 cut(s) 30, 42, 391, 810, 875
SspDI GGCGCC 2 cut(s) 761, 909
SspMI CTAG 6 cut(s) 182, 194, 210, 780, 999, 1092
SstI GAGCTC 1 cut(s) 645
StyI CCWWGG 3 cut(s) 209, 480, 779
TaaI ACNGT 4 cut(s) 95, 220, 690, 1069
TaiI ACGT 6 cut(s) 30, 38, 201, 206, 791, 1025
TaqI TCGA 6 cut(s) 252, 395, 522, 585, 645, 699
TasI AATT 5 cut(s) 30, 42, 391, 810, 875
TauI GCSGC 2 cut(s) 570, 597
Tru1I TTAA 2 cut(s) 24, 45
Tru9I TTAA 2 cut(s) 24, 45
TscAI CASTG 2 cut(s) 98, 1074
TseFI GTSAC 3 cut(s) 199, 302, 1069
TseI GCWGC 3 cut(s) 917, 1059, 1196
Tsp45I GTSAC 3 cut(s) 199, 302, 1069
TspGWI ACGGA 2 cut(s) 46, 623
TspRI CASTG 2 cut(s) 98, 1074
Van91I CCANNNNNTGG 2 cut(s) 877, 992
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 2 cut(s) 391, 810
XbaI TCTAGA 1 cut(s) 1091
XceI RCATGY 1 cut(s) 733
XmaJI CCTAGG 2 cut(s) 209, 779
XspI CTAG 6 cut(s) 182, 194, 210, 780, 999, 1092
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.