AT3G26770

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012770
Physical Location & Seq
Forward (+)
9845334 .. 9847200
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26770.1

Sequence Viewer

Length: 921 bp
ATGGCGGCCATAGTACTGATCAGATCTATCGTCAGAAACTTTAAACGGCCAGCCACCGCAGCCTCAGCCGCTTACTCGACAGGTGGTGGTGGCGGCGGTTGTACTTGTACGAGTAAAAAGCTAGAAGGCAAAGTAGCTCTCATAACTGGTGGTGCTAGCGGGCTCGGTAAGGCCACGGCCAGCGAGTTTCTCCGCCATGGTGCCCGAGTCGTGATCGCCGACTTAGACGCGGAAACCGGGACAAAAACCGCTAAAGAACTAGGCTCGGAGGCAGAGTTTGTGCGGTGTGATGTCACGGTGGAGGCTGATATCGCTGGAGCCGTGGAAATGACGGTGGAGCGGTATGGGAAGCTAGACGTGATGTACAATAACGCTGGGATTGTTGGACCTATGACTCCAGCGAGCATATCGCAGCTTGATATGACAGAATTCGAGAGAGTAATGAGGATTAATGTTTTTGGTGTTGTCTCCGGCATCAAACACGCCGCTAAGTTTATGATTCCGGCTAGGTCTGGATGCATTTTGTGCACATCAAGCGTTGCAGGCGTGACTGGAGGGTTGGCTCCACATTCATACACAATCTCAAAGTTCACAACTCCCGGAATAGTCAAGTCGGCAGCAAGCGAGCTCTGCGAACACGGCGTGCGTATAAACTGTATCTCACCGGGTACGGTGGCTACACCGCTCACTCTCAGTTACCTTCAGAAAGTGTTTCCGAAGGTATCGGAGGAGAAGCTACGCGAAACAGTGAAAGGAATGGGTGAGTTAAAAGGAGCTGAGTGTGAAGAAGCTGACGTGGCTAAGGCTGCTTTGTATTTGGCTTCCAACGACGGTAAATACGTTACTGGCCATAACTTGGTCGTGGATGGTGGCATGACTGCTTTCAAAATAGCTGGTTTTCCTTTTCCTTCGGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

306

Amino Acids

31.78

Weight (kDa)

8.06

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 44 - 231 3.3e-49 short chain dehydrogenase
KR PF08659 46 - 194 9.3e-11 KR domain
adh_short_C2 PF13561 52 - 293 5.5e-55 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 856
AccBSI CCGCTC 2 cut(s) 340, 685
AccII CGCG 2 cut(s) 230, 741
AcoI YGGCCR 4 cut(s) 6, 47, 177, 847
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 686
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 5 cut(s) 15, 103, 109, 365, 670
AfiI CCNNNNNNNGG 1 cut(s) 856
AgsI TTSAA 1 cut(s) 886
AjiI CACGTC 2 cut(s) 358, 796
AluBI AGCT 9 cut(s) 121, 137, 352, 415, 628, 736, 776, 791, 893
AluI AGCT 9 cut(s) 121, 137, 352, 415, 628, 736, 776, 791, 893
Alw21I GWGCWC 2 cut(s) 530, 630
Alw26I GTCTC 1 cut(s) 472
Alw44I GTGCAC 1 cut(s) 526
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 5 cut(s) 6, 47, 171, 177, 847
ApaLI GTGCAC 1 cut(s) 526
ApeKI GCWGC 4 cut(s) 59, 412, 617, 806
ApoI RAATTY 1 cut(s) 428
AseI ATTAAT 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 386
AsuC2I CCSGG 3 cut(s) 238, 600, 666
AsuHPI GGTGA 2 cut(s) 654, 773
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 386
BaeGI GKGCMC 2 cut(s) 205, 530
BalI TGGCCA 1 cut(s) 849
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 165, 630
Bbv12I GWGCWC 2 cut(s) 530, 630
BbvCI CCTCAGC 1 cut(s) 64
BbvI GCAGC 4 cut(s) 71, 424, 629, 793
BccI CCATC 1 cut(s) 860
BceAI ACGGC 4 cut(s) 62, 192, 305, 655
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 3 cut(s) 238, 600, 666
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 5 cut(s) 122, 156, 260, 353, 507
BglII AGATCT 1 cut(s) 23
BisI GCNGC 8 cut(s) 6, 60, 69, 94, 413, 486, 618, 807
BlsI GCNGC 8 cut(s) 7, 61, 70, 95, 414, 487, 619, 808
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 3 cut(s) 238, 600, 666
Bme18I GGWCC 1 cut(s) 386
BmeT110I CYCGRG 1 cut(s) 204
BmgBI CACGTC 2 cut(s) 358, 796
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 3 cut(s) 202, 319, 564
BmrFI CCNGG 3 cut(s) 238, 600, 666
BmsI GCATC 2 cut(s) 483, 506
BmtI GCTAGC 1 cut(s) 159
BpmI CTGGAG 3 cut(s) 336, 381, 573
Bpu10I CCTNAGC 2 cut(s) 64, 801
BpuMI CCSGG 3 cut(s) 238, 600, 666
BsaJI CCNNGG 3 cut(s) 174, 196, 321
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 856
Bse1I ACTGG 3 cut(s) 151, 556, 850
BseDI CCNNGG 3 cut(s) 174, 196, 321
BseGI GGATG 2 cut(s) 521, 871
BseLI CCNNNNNNNGG 1 cut(s) 856
BseMII CTCAG 3 cut(s) 78, 706, 768
BseNI ACTGG 3 cut(s) 151, 556, 850
BseRI GAGGAG 1 cut(s) 743
BseSI GKGCMC 2 cut(s) 205, 530
BseXI GCAGC 4 cut(s) 71, 424, 629, 793
BseYI CCCAGC 1 cut(s) 374
Bsh1236I CGCG 2 cut(s) 230, 741
BshFI GGCC 5 cut(s) 8, 49, 173, 179, 849
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 530, 630
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 5 cut(s) 237, 471, 503, 600, 665
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 856
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 5 cut(s) 8, 49, 173, 179, 849
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 4 cut(s) 165, 205, 530, 630
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 3 cut(s) 18, 23, 213
Bsp19I CCATGG 1 cut(s) 196
BspANI GGCC 5 cut(s) 8, 49, 173, 179, 849
BspCNI CTCAG 3 cut(s) 77, 705, 769
BspFNI CGCG 2 cut(s) 230, 741
BspHI TCATGA 1 cut(s) 917
BspLI GGNNCC 3 cut(s) 202, 319, 564
BspOI GCTAGC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 200
BsrBI CCGCTC 2 cut(s) 340, 685
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 3 cut(s) 151, 556, 850
BssECI CCNNGG 3 cut(s) 174, 196, 321
BssMI GATC 3 cut(s) 18, 23, 213
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 6 cut(s) 298, 334, 656, 673, 748, 833
BstAPI GCANNNNNTGC 1 cut(s) 525
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 9 cut(s) 51, 157, 161, 181, 403, 544, 622, 626, 644
BstDEI CTNAG 6 cut(s) 64, 223, 489, 692, 777, 801
BstDSI CCRYGG 3 cut(s) 174, 196, 321
BstF5I GGATG 2 cut(s) 521, 871
BstFNI CGCG 2 cut(s) 230, 741
BstKTI GATC 3 cut(s) 21, 26, 216
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 3 cut(s) 18, 23, 213
BstSCI CCNGG 3 cut(s) 236, 598, 664
BstSLI GKGCMC 2 cut(s) 205, 530
BstUI CGCG 2 cut(s) 230, 741
BstV1I GCAGC 4 cut(s) 71, 424, 629, 793
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 5 cut(s) 8, 49, 173, 179, 849
BtgI CCRYGG 3 cut(s) 174, 196, 321
BtrI CACGTC 2 cut(s) 358, 796
BtsCI GGATG 2 cut(s) 521, 871
BtsIMutI CAGTG 1 cut(s) 753
Cac8I GCNNGC 9 cut(s) 51, 157, 161, 181, 403, 544, 622, 626, 644
CciI TCATGA 1 cut(s) 917
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 1 cut(s) 236
Csp6I GTAC 5 cut(s) 14, 102, 108, 364, 669
CviAII CATG 3 cut(s) 197, 874, 918
CviQI GTAC 5 cut(s) 14, 102, 108, 364, 669
DdeI CTNAG 6 cut(s) 64, 223, 489, 692, 777, 801
DpnI GATC 3 cut(s) 20, 25, 215
DpnII GATC 3 cut(s) 18, 23, 213
DraI TTTAAA 1 cut(s) 43
DraIII CACNNNGTG 1 cut(s) 643
EaeI YGGCCR 4 cut(s) 6, 47, 177, 847
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 2 cut(s) 165, 630
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 428
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 521
EcoT38I GRGCYC 2 cut(s) 165, 630
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 3 cut(s) 200, 877, 921
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 196, 873, 917
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 8 cut(s) 6, 60, 69, 94, 413, 486, 618, 807
FokI GGATG 2 cut(s) 528, 878
FriOI GRGCYC 2 cut(s) 165, 630
Fsp4HI GCNGC 8 cut(s) 6, 60, 69, 94, 413, 486, 618, 807
FspBI CTAG 5 cut(s) 122, 156, 260, 353, 507
GluI GCNGC 8 cut(s) 6, 60, 69, 94, 413, 486, 618, 807
GsaI CCCAGC 1 cut(s) 378
GsuI CTGGAG 3 cut(s) 336, 381, 573
HaeIII GGCC 5 cut(s) 8, 49, 173, 179, 849
HapII CCGG 5 cut(s) 237, 471, 503, 600, 665
HgaI GACGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 200, 877, 921
HinfI GANTC 4 cut(s) 207, 394, 499, 914
HpaII CCGG 5 cut(s) 237, 471, 503, 600, 665
HphI GGTGA 2 cut(s) 654, 773
Hpy166II GTNNAC 2 cut(s) 528, 591
Hpy188I TCNGA 7 cut(s) 23, 35, 268, 705, 717, 727, 913
Hpy188III TCNNGA 4 cut(s) 211, 433, 513, 918
Hpy8I GTNNAC 2 cut(s) 528, 591
Hpy99I CGWCG 1 cut(s) 833
HpyAV CCTTC 4 cut(s) 119, 710, 712, 918
HpyCH4III ACNGT 6 cut(s) 298, 334, 656, 673, 748, 833
HpyCH4IV ACGT 3 cut(s) 357, 795, 840
HpyCH4V TGCA 3 cut(s) 519, 528, 542
HpyF3I CTNAG 6 cut(s) 64, 223, 489, 692, 777, 801
HpySE526I ACGT 3 cut(s) 357, 795, 840
Hsp92II CATG 3 cut(s) 200, 877, 921
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 23, 213
LmnI GCTCC 4 cut(s) 317, 337, 568, 773
Lsp1109I GCAGC 4 cut(s) 71, 424, 629, 793
LweI GCATC 2 cut(s) 483, 506
MaeI CTAG 5 cut(s) 122, 156, 260, 353, 507
MaeII ACGT 3 cut(s) 357, 795, 840
MaeIII GTNAC 4 cut(s) 292, 547, 695, 841
MalI GATC 3 cut(s) 20, 25, 215
MbiI CCGCTC 2 cut(s) 340, 685
MboI GATC 3 cut(s) 18, 23, 213
MboII GAAGA 1 cut(s) 797
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 4 cut(s) 165, 205, 530, 630
MlsI TGGCCA 1 cut(s) 849
MluCI AATT 1 cut(s) 428
MluNI TGGCCA 1 cut(s) 849
MlyI GAGTC 2 cut(s) 216, 388
MmeI TCCRAC 2 cut(s) 364, 849
MnlI CCTC 6 cut(s) 73, 262, 295, 438, 548, 721
Mox20I TGGCCA 1 cut(s) 849
Mph1103I ATGCAT 1 cut(s) 521
MscI TGGCCA 1 cut(s) 849
MseI TTAA 3 cut(s) 42, 450, 767
Msp20I TGGCCA 1 cut(s) 849
MspI CCGG 5 cut(s) 237, 471, 503, 600, 665
MspR9I CCNGG 3 cut(s) 238, 600, 666
MvnI CGCG 2 cut(s) 230, 741
NciI CCSGG 3 cut(s) 238, 600, 666
NcoI CCATGG 1 cut(s) 196
NdeII GATC 3 cut(s) 18, 23, 213
NheI GCTAGC 1 cut(s) 155
NlaIII CATG 3 cut(s) 200, 877, 921
NlaIV GGNNCC 3 cut(s) 202, 319, 564
NmuCI GTSAC 2 cut(s) 292, 547
NsiI ATGCAT 1 cut(s) 521
PagI TCATGA 1 cut(s) 917
PcsI WCGNNNNNNNCGW 3 cut(s) 216, 318, 837
PfeI GAWTC 2 cut(s) 499, 914
PflMI CCANNNNNTGG 1 cut(s) 856
PfoI TCCNGGA 1 cut(s) 598
PkrI GCNGC 8 cut(s) 7, 61, 70, 95, 414, 487, 619, 808
PleI GAGTC 2 cut(s) 215, 388
PpsI GAGTC 2 cut(s) 215, 388
PshBI ATTAAT 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 374
PspN4I GGNNCC 3 cut(s) 202, 319, 564
PspPI GGNCC 1 cut(s) 386
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 5 cut(s) 15, 103, 109, 365, 670
RsaNI GTAC 5 cut(s) 14, 102, 108, 364, 669
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 3 cut(s) 42, 450, 767
SatI GCNGC 8 cut(s) 6, 60, 69, 94, 413, 486, 618, 807
Sau3AI GATC 3 cut(s) 18, 23, 213
Sau96I GGNCC 1 cut(s) 386
ScaI AGTACT 1 cut(s) 15
SchI GAGTC 2 cut(s) 216, 388
ScrFI CCNGG 3 cut(s) 238, 600, 666
SduI GDGCHC 4 cut(s) 165, 205, 530, 630
SfaNI GCATC 2 cut(s) 483, 506
SinI GGWCC 1 cut(s) 386
Sse9I AATT 1 cut(s) 428
SspMI CTAG 5 cut(s) 122, 156, 260, 353, 507
SstI GAGCTC 1 cut(s) 630
StyD4I CCNGG 3 cut(s) 236, 598, 664
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 6 cut(s) 298, 334, 656, 673, 748, 833
TaiI ACGT 3 cut(s) 360, 798, 843
TaqI TCGA 2 cut(s) 77, 432
TasI AATT 1 cut(s) 428
TatI WGTACW 3 cut(s) 13, 101, 363
TauI GCSGC 4 cut(s) 8, 71, 96, 488
TfiI GAWTC 2 cut(s) 499, 914
Tru1I TTAA 3 cut(s) 42, 450, 767
Tru9I TTAA 3 cut(s) 42, 450, 767
TscAI CASTG 1 cut(s) 753
TseFI GTSAC 2 cut(s) 292, 547
TseI GCWGC 4 cut(s) 59, 412, 617, 806
Tsp45I GTSAC 2 cut(s) 292, 547
TspDTI ATGAA 2 cut(s) 561, 906
TspRI CASTG 1 cut(s) 753
Van91I CCANNNNNTGG 1 cut(s) 856
VneI GTGCAC 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 386
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 1 cut(s) 428
XspI CTAG 5 cut(s) 122, 156, 260, 353, 507
ZrmI AGTACT 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.