Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7987744.1

Orthogroup ID

OG0012770

Physical Location & Seq

Genomic Coordinates Reverse (-)

198 .. 497

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7987744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ctgtgccgaagtggggttcgaatcaattgcatttcaccggctccaattccaacgcctcttgtggttagggagataagtcggttttatccaggggcaacggaggagcagattatagagatagtgaatggtgtgggagaacttaagggtgcaaaggcggaggcagtagatgtagccaaggcagcgctctatttggcctctgatgaagcaaagtatgtaacaggtcataatctagtagtcgatggaggcttcacctgctttaaaactcttagctttcctcatcctgatcaagtacttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

99

Amino Acids

10.58

Weight (kDa)

5.59

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26770
malus_domestica	MD09G1003900.v1.1 MD17G1007500.v1.1
prunus_persica	Prupe.3G312700_v2.0.a1 Prupe.3G312700_v2.0.a1
pyrus_communis	pycom17g00310
rosa_chinensis	RchiOBHm_Chr2g0176411
rosa_laevigata	RLG00000022411
rosa_multiflora	Rmu_co7987744.1_g000001 Rmu_sc0009140.1_g000006 Rmu_sc0011904.1_g000018
rosa_roxburghii	Rroxscaffold_2G00076470
rosa_rugosa	Rorug02G0594000
rosa_samantha	Rh2AG672500 Rh2BG684000 Rh2CG646700 Rh2DG697500
rosa_wichuraiana	Rw2G055160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AciI	CCGC	1 cut(s)	155
AfaI	GTAC	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflII	CTTAAG	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	183
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	27, 241
AsuII	TTCGAA	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	283
BfaI	CTAG	1 cut(s)	230
BfoI	RGCGCY	1 cut(s)	185
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	89, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	89, 174
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	13
BsnI	GGCC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	260
BspT104I	TTCGAA	1 cut(s)	19
BspTI	CTTAAG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	89, 174
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	90
BstAFI	CTTAAG	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	1 cut(s)	277
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 252
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	260
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	290
CviJI	RGCY	5 cut(s)	41, 173, 194, 246, 270
CviKI_1	RGCY	5 cut(s)	41, 173, 194, 246, 270
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
DraI	TTTAAA	1 cut(s)	259
EciI	GGCGGA	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	174
Eco47III	AGCGCT	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaiI	YATR	3 cut(s)	113, 213, 225
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	38
HhaI	GCGC	1 cut(s)	184
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	27, 241
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4V	TGCA	2 cut(s)	30, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 252
HpyF3I	CTNAG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	182
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	46, 103
LpnPI	CCDG	6 cut(s)	51, 75, 102, 204, 265, 294
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MfeI	CAATTG	1 cut(s)	25
MluCI	AATT	2 cut(s)	25, 45
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	66, 94, 151, 205, 236, 285
MseI	TTAA	2 cut(s)	141, 258
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	179, 252
NdeII	GATC	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	19
PaqCI	CACCTGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	141, 258
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	3 cut(s)	223, 254, 272
SfuI	TTCGAA	1 cut(s)	19
SgeI	CNNG	9 cut(s)	50, 71, 101, 102, 187, 231, 242, 264, 293
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	25, 45
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	2 cut(s)	19, 237
TasI	AATT	2 cut(s)	25, 45
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	2 cut(s)	141, 258
Tru9I	TTAA	2 cut(s)	141, 258
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.