Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012770

Physical Location & Seq

Genomic Coordinates Forward (+)

89205270 .. 89207520

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG684000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATTGCAGACACTGATTGTGAGATGGGCCAACAAGTTGCCAAAGAGCTGGGCCCAACAGCCCACTTTGTGGAATGCGACGTTGCTGTTGAGTCACAAGTAGCACAAGCTGTAGAAAAGACCGTGGAAAGGTACGGAAAGCTCGACATAATGTACAACAATGCTGGAATAACCGGGCCGACAATCCCACCCAGCATTGCCGACCTCGATCTCGATGAGTTTGACCGTGTCATGCGGATCAACGTGAGGGGAACAATTGCCGGGATAAAGCATGCTGCCCGAGTGATGATCCCATTGGGCTCGGGGTCCATACTGTGCACATCTAGCATTACTGGGCTCCTGGGTGGGCTTGGGCCGCATCCTTACTCGATTTCGAAGTTTACAGTACCAGGCATAGTGAAGGCTGTGGCAAGCGAGCTGTGCCGAAGTGGGGTTCGGATCAATTGCATTTCACCGGCTCCAATTCCAACGCCTCTTGTGGTTAGGGAGATAAGTCGGTTTTATCCGGGGGCAACGGAGGAGCAGATTATAGAGATAGTGAATGGCGTGGGAGAACTTAAGGGTGCAAAGGCGGAGGCAGTAGATGTAGCCAAGGCAGCGCTCTATTTGGCCTCTGATGAAGCAAAGTATGTAACAGGTCATAATCTAGTCGTCGATGGAGGCTTCACCTGCTTTAAAACTCTTAGCTTTCCTCATCCTGATCAAGTACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

238

Amino Acids

25.22

Weight (kDa)

5.25

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	8 - 160	3.7e-35	short chain dehydrogenase
adh_short_C2	PF13561	9 - 223	2.2e-50	Enoyl-(Acyl carrier protein) reductase
KR	PF08659	15 - 125	7.5e-06	KR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26770
malus_domestica	MD09G1003900.v1.1 MD17G1007500.v1.1
prunus_persica	Prupe.3G312700_v2.0.a1 Prupe.3G312700_v2.0.a1
pyrus_communis	pycom17g00310
rosa_chinensis	RchiOBHm_Chr2g0176411
rosa_laevigata	RLG00000022411
rosa_multiflora	Rmu_co7987744.1_g000001 Rmu_sc0009140.1_g000006 Rmu_sc0011904.1_g000018
rosa_roxburghii	Rroxscaffold_2G00076470
rosa_rugosa	Rorug02G0594000
rosa_samantha	Rh2AG672500 Rh2BG684000 Rh2CG646700 Rh2DG697500
rosa_wichuraiana	Rw2G055160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	677
Acc36I	ACCTGC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	3 cut(s)	235, 356, 572
AclWI	GGATC	3 cut(s)	245, 283, 446
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	4 cut(s)	134, 155, 387, 708
AfeI	AGCGCT	1 cut(s)	600
AfiI	CCNNNNNNNGG	3 cut(s)	70, 129, 430
AflII	CTTAAG	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	339, 388
AluBI	AGCT	5 cut(s)	49, 110, 142, 418, 687
AluI	AGCT	5 cut(s)	49, 110, 142, 418, 687
Alw21I	GWGCWC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	245, 283, 446
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	2 cut(s)	279, 301
Aor51HI	AGCGCT	1 cut(s)	600
AoxI	GGCC	5 cut(s)	28, 52, 176, 353, 609
ApaI	GGGCCC	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	275, 596
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	6 cut(s)	28, 52, 53, 176, 306, 353
AsuC2I	CCSGG	3 cut(s)	175, 262, 507
AsuHPI	GGTGA	2 cut(s)	444, 658
AsuII	TTCGAA	1 cut(s)	374
AvaI	CYCGRG	2 cut(s)	279, 301
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	2 cut(s)	56, 320
BanII	GRGCYC	3 cut(s)	56, 302, 339
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	262, 608
BccI	CCATC	2 cut(s)	19, 650
BciT130I	CCWGG	2 cut(s)	341, 390
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	3 cut(s)	175, 262, 507
BfaI	CTAG	2 cut(s)	324, 647
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	602
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	677
BisI	GCNGC	3 cut(s)	276, 356, 597
BlsI	GCNGC	3 cut(s)	277, 357, 598
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	5 cut(s)	175, 262, 341, 390, 507
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	2 cut(s)	279, 301
BmgT120I	GGNCC	6 cut(s)	28, 52, 53, 176, 306, 353
BmiI	GGNNCC	4 cut(s)	54, 307, 338, 459
BmrFI	CCNGG	5 cut(s)	175, 262, 341, 390, 507
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	374
BpuMI	CCSGG	3 cut(s)	175, 262, 507
BsaJI	CCNNGG	4 cut(s)	123, 340, 506, 591
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 129, 430
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	341, 390
BseDI	CCNNGG	4 cut(s)	123, 340, 506, 591
BseGI	GGATG	2 cut(s)	358, 694
BseLI	CCNNNNNNNGG	3 cut(s)	70, 129, 430
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	533
BseSI	GKGCMC	2 cut(s)	56, 320
BseXI	GCAGC	2 cut(s)	262, 608
BseYI	CCCAGC	2 cut(s)	49, 191
BshFI	GGCC	5 cut(s)	30, 54, 178, 355, 611
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	2 cut(s)	279, 301
BsiSI	CCGG	4 cut(s)	174, 261, 455, 506
BslI	CCNNNNNNNGG	3 cut(s)	70, 129, 430
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	5 cut(s)	30, 54, 178, 355, 611
BsoBI	CYCGRG	2 cut(s)	279, 301
Bsp119I	TTCGAA	1 cut(s)	374
Bsp120I	GGGCCC	1 cut(s)	52
Bsp1286I	GDGCHC	4 cut(s)	56, 302, 320, 339
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	5 cut(s)	208, 237, 288, 438, 700
BspACI	CCGC	3 cut(s)	235, 356, 572
BspANI	GGCC	5 cut(s)	30, 54, 178, 355, 611
BspLI	GGNNCC	4 cut(s)	54, 307, 338, 459
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	3 cut(s)	245, 283, 446
BspT104I	TTCGAA	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	454
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	4 cut(s)	123, 340, 506, 591
BssMI	GATC	5 cut(s)	208, 237, 288, 438, 700
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	341, 390
Bst4CI	ACNGT	4 cut(s)	124, 227, 315, 385
BstAFI	CTTAAG	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	153
BstBI	TTCGAA	1 cut(s)	374
BstC8I	GCNNGC	3 cut(s)	273, 412, 416
BstDEI	CTNAG	1 cut(s)	683
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	358, 694
BstH2I	RGCGCY	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	5 cut(s)	211, 240, 291, 441, 703
BstMBI	GATC	5 cut(s)	208, 237, 288, 438, 700
BstMWI	GCNNNNNNNGC	5 cut(s)	324, 355, 420, 596, 669
BstNI	CCWGG	2 cut(s)	341, 390
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	5 cut(s)	173, 260, 339, 388, 505
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	2 cut(s)	56, 320
BstV1I	GCAGC	2 cut(s)	262, 608
BstXI	CCANNNNNNTGG	1 cut(s)	49
BsuRI	GGCC	5 cut(s)	30, 54, 178, 355, 611
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	358, 694
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	3 cut(s)	273, 412, 416
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	1 cut(s)	601
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	6 cut(s)	28, 52, 53, 176, 306, 353
Csp6I	GTAC	4 cut(s)	133, 154, 386, 707
CviAII	CATG	2 cut(s)	232, 272
CviQI	GTAC	4 cut(s)	133, 154, 386, 707
DdeI	CTNAG	1 cut(s)	683
DpnI	GATC	5 cut(s)	210, 239, 290, 440, 702
DpnII	GATC	5 cut(s)	208, 237, 288, 438, 700
DraI	TTTAAA	1 cut(s)	676
DraIII	CACNNNGTG	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	3 cut(s)	56, 302, 339
Eco47I	GGWCC	1 cut(s)	306
Eco47III	AGCGCT	1 cut(s)	600
Eco88I	CYCGRG	2 cut(s)	279, 301
EcoRII	CCWGG	2 cut(s)	339, 388
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	3 cut(s)	56, 302, 339
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	235, 275
FaiI	YATR	8 cut(s)	149, 233, 273, 311, 395, 530, 630, 642
FatI	CATG	2 cut(s)	231, 271
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	3 cut(s)	276, 356, 597
FokI	GGATG	2 cut(s)	345, 681
FriOI	GRGCYC	3 cut(s)	56, 302, 339
Fsp4HI	GCNGC	3 cut(s)	276, 356, 597
FspBI	CTAG	2 cut(s)	324, 647
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	3 cut(s)	276, 356, 597
GsaI	CCCAGC	2 cut(s)	53, 195
HaeII	RGCGCY	1 cut(s)	602
HaeIII	GGCC	5 cut(s)	30, 54, 178, 355, 611
HapII	CCGG	4 cut(s)	174, 261, 455, 506
HhaI	GCGC	1 cut(s)	601
Hin1II	CATG	2 cut(s)	235, 275
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	4 cut(s)	174, 261, 455, 506
HphI	GGTGA	2 cut(s)	444, 658
Hpy166II	GTNNAC	2 cut(s)	318, 381
Hpy188I	TCNGA	2 cut(s)	438, 616
Hpy188III	TCNNGA	2 cut(s)	212, 698
Hpy8I	GTNNAC	2 cut(s)	318, 381
Hpy99I	CGWCG	2 cut(s)	83, 656
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	4 cut(s)	124, 227, 315, 385
HpyCH4IV	ACGT	2 cut(s)	81, 243
HpyCH4V	TGCA	4 cut(s)	8, 318, 447, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	324, 355, 420, 596, 669
HpyF3I	CTNAG	1 cut(s)	683
HpySE526I	ACGT	2 cut(s)	81, 243
Hsp92II	CATG	2 cut(s)	235, 275
HspAI	GCGC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	208, 237, 288, 438, 700
LmnI	GCTCC	3 cut(s)	342, 463, 520
Lsp1109I	GCAGC	2 cut(s)	262, 608
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	2 cut(s)	324, 647
MaeII	ACGT	2 cut(s)	81, 243
MaeIII	GTNAC	2 cut(s)	93, 631
MalI	GATC	5 cut(s)	210, 239, 290, 440, 702
MboI	GATC	5 cut(s)	208, 237, 288, 438, 700
MfeI	CAATTG	2 cut(s)	255, 442
MhlI	GDGCHC	4 cut(s)	56, 302, 320, 339
MluCI	AATT	3 cut(s)	255, 442, 462
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	8 cut(s)	215, 240, 483, 511, 568, 622, 653, 702
MseI	TTAA	2 cut(s)	558, 675
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	4 cut(s)	174, 261, 455, 506
MspR9I	CCNGG	5 cut(s)	175, 262, 341, 390, 507
MunI	CAATTG	2 cut(s)	255, 442
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	2 cut(s)	341, 390
MwoI	GCNNNNNNNGC	5 cut(s)	324, 355, 420, 596, 669
NciI	CCSGG	3 cut(s)	175, 262, 507
NdeII	GATC	5 cut(s)	208, 237, 288, 438, 700
NlaIII	CATG	2 cut(s)	235, 275
NlaIV	GGNNCC	4 cut(s)	54, 307, 338, 459
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	275
PaqCI	CACCTGC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	277, 357, 598
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	339, 388
PspFI	CCCAGC	2 cut(s)	49, 191
PspGI	CCWGG	2 cut(s)	339, 388
PspN4I	GGNNCC	4 cut(s)	54, 307, 338, 459
PspOMI	GGGCCC	1 cut(s)	52
PspPI	GGNCC	6 cut(s)	28, 52, 53, 176, 306, 353
PstNI	CAGNNNCTG	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	4 cut(s)	134, 155, 387, 708
RsaNI	GTAC	4 cut(s)	133, 154, 386, 707
SaqAI	TTAA	2 cut(s)	558, 675
SatI	GCNGC	3 cut(s)	276, 356, 597
Sau3AI	GATC	5 cut(s)	208, 237, 288, 438, 700
Sau96I	GGNCC	6 cut(s)	28, 52, 53, 176, 306, 353
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	5 cut(s)	175, 262, 341, 390, 507
SduI	GDGCHC	4 cut(s)	56, 302, 320, 339
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	374
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	3 cut(s)	255, 442, 462
SsiI	CCGC	3 cut(s)	235, 356, 572
SspMI	CTAG	2 cut(s)	324, 647
StyD4I	CCNGG	5 cut(s)	173, 260, 339, 388, 505
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	4 cut(s)	124, 227, 315, 385
TaiI	ACGT	2 cut(s)	84, 246
TaqI	TCGA	6 cut(s)	144, 207, 213, 368, 374, 654
TasI	AATT	3 cut(s)	255, 442, 462
TatI	WGTACW	2 cut(s)	153, 706
TauI	GCSGC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	558, 675
Tru9I	TTAA	2 cut(s)	558, 675
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	2 cut(s)	275, 596
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	2 cut(s)	150, 530
TspRI	CASTG	1 cut(s)	19
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	557
VneI	GTGCAC	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	306
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	2 cut(s)	324, 647
ZrmI	AGTACT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.