Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012770

Physical Location & Seq

Genomic Coordinates Forward (+)

88512461 .. 88514711

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG672500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTCAGATCATTTGCCATCAGCAGATTCAAAGAGGCAGCTGGAGCAGCTAGAGGGCTCAAGTACATCAGCTGCAATCATGTTCTCTGTAAGCGAACGAGACCTTATTCAACCGCTGGCCGTAGTGGAAATGGAAGGCTGGAAGGTAAGGTAGCCTTAATAACAGGGTCCGCAAGTGGGCTCGGGAAGGCAGCAGCCCACGAATTCGTCCAAAATGGGGCGCATGTCATGATTGCAGACACTGATTGTGAGATGGGCCAACAAGTTGCCAAAGAGCTGGGCCCAACAGCCCACTTTGTGGAATGCGACGTTGCTGTTGAGTCACAAGTAGCACAAGCTGTAGAAAAGACCGTGGAAAGGTACGGAAAGCTCGACATAATGTACAACAATGCTGGAATAACCGGGCCGACAATCCCACCCAGCATTGCCGACCTCGATCTCGATGAGTTTGACCGTGTCATGCGGATCAACGTGAGGGGAACAATTGCCGGGATAAAGCATGCTGCCCGAGTGATGATCCCATTGGGCTCGGGGTCCATACTGTGCACATCTAGCATTACTGGGCTCCTGGGTGGGCTTGGGCCGCATCCTTACTCGATTTCGAAGTTTACAGTACCAGGCATAGTGAAGGCTGTGGCAAGCGAGCTGTGCCGAAGTGGGGTTCGGATCAATTGCATTTCACCGGCTCCAATTCCAACGCCTCTTGTGGTTAGGGAGATAAGTCGGTTTTATCCGGGGGCAACGGAGGAGCAGATTATAGAGATAGTGAATGGCGTGGGAGAACTTAAGGGTGCAAAGGCGGAGGCAGTAGATGTAGCCAAGGCAGCGCTCTATTTGGCCTCTGATGAAGCAAAGTATGTAACAGGTCATAATCTAGTCGTCGATGGAGGCTTCACCTGCTTTAAAACTCTTAGCTTTCCTCATCCTGATCAAGTACTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

314

Amino Acids

33.18

Weight (kDa)

8.08

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	50 - 236	3e-47	short chain dehydrogenase
KR	PF08659	52 - 201	2e-10	KR domain
adh_short_C2	PF13561	56 - 299	1.9e-57	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26770
malus_domestica	MD09G1003900.v1.1 MD17G1007500.v1.1
prunus_persica	Prupe.3G312700_v2.0.a1 Prupe.3G312700_v2.0.a1
pyrus_communis	pycom17g00310
rosa_chinensis	RchiOBHm_Chr2g0176411
rosa_laevigata	RLG00000022411
rosa_multiflora	Rmu_co7987744.1_g000001 Rmu_sc0009140.1_g000006 Rmu_sc0011904.1_g000018
rosa_roxburghii	Rroxscaffold_2G00076470
rosa_rugosa	Rorug02G0594000
rosa_samantha	Rh2AG672500 Rh2BG684000 Rh2CG646700 Rh2DG697500
rosa_wichuraiana	Rw2G055160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	905
Acc36I	ACCTGC	1 cut(s)	905
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	5 cut(s)	114, 171, 463, 584, 800
AclWI	GGATC	3 cut(s)	473, 511, 674
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	5 cut(s)	65, 362, 383, 615, 936
AfeI	AGCGCT	1 cut(s)	828
AfiI	CCNNNNNNNGG	5 cut(s)	177, 217, 298, 357, 658
AflII	CTTAAG	1 cut(s)	785
AgsI	TTSAA	2 cut(s)	31, 111
AjnI	CCWGG	2 cut(s)	567, 616
AluBI	AGCT	8 cut(s)	41, 50, 72, 277, 338, 370, 646, 915
AluI	AGCT	8 cut(s)	41, 50, 72, 277, 338, 370, 646, 915
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	473, 511, 674
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	3 cut(s)	182, 507, 529
Aor51HI	AGCGCT	1 cut(s)	828
AoxI	GGCC	6 cut(s)	118, 256, 280, 404, 581, 837
ApaI	GGGCCC	1 cut(s)	284
ApaLI	GTGCAC	1 cut(s)	544
ApeKI	GCWGC	7 cut(s)	38, 47, 72, 191, 194, 503, 824
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	223, 829
AspS9I	GGNCC	7 cut(s)	168, 256, 280, 281, 404, 534, 581
AsuC2I	CCSGG	3 cut(s)	403, 490, 735
AsuHPI	GGTGA	2 cut(s)	672, 886
AsuII	TTCGAA	1 cut(s)	602
AvaI	CYCGRG	3 cut(s)	182, 507, 529
AvaII	GGWCC	2 cut(s)	168, 534
BaeGI	GKGCMC	2 cut(s)	284, 548
BanII	GRGCYC	5 cut(s)	60, 183, 284, 530, 567
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	7 cut(s)	50, 59, 59, 203, 206, 490, 836
BccI	CCATC	3 cut(s)	26, 247, 878
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	569, 618
BclI	TGATCA	1 cut(s)	928
BcnI	CCSGG	3 cut(s)	403, 490, 735
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	3 cut(s)	51, 552, 875
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	830
BfrI	CTTAAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	905
BisI	GCNGC	8 cut(s)	39, 48, 73, 192, 195, 504, 584, 825
BlsI	GCNGC	8 cut(s)	40, 49, 74, 193, 196, 505, 585, 826
BmcAI	AGTACT	1 cut(s)	936
Bme1390I	CCNGG	5 cut(s)	403, 490, 569, 618, 735
Bme18I	GGWCC	2 cut(s)	168, 534
BmeT110I	CYCGRG	3 cut(s)	182, 507, 529
BmgT120I	GGNCC	7 cut(s)	168, 256, 280, 281, 404, 534, 581
BmiI	GGNNCC	5 cut(s)	169, 282, 535, 566, 687
BmrFI	CCNGG	5 cut(s)	403, 490, 569, 618, 735
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	595
BmuI	ACTGGG	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	3 cut(s)	403, 490, 735
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	4 cut(s)	351, 568, 734, 819
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 217, 298, 357, 658
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	569, 618
BseDI	CCNNGG	4 cut(s)	351, 568, 734, 819
BseGI	GGATG	2 cut(s)	586, 922
BseLI	CCNNNNNNNGG	5 cut(s)	177, 217, 298, 357, 658
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	1 cut(s)	761
BseSI	GKGCMC	2 cut(s)	284, 548
BseXI	GCAGC	7 cut(s)	50, 59, 59, 203, 206, 490, 836
BseYI	CCCAGC	2 cut(s)	277, 419
BshFI	GGCC	6 cut(s)	120, 258, 282, 406, 583, 839
BsiHKAI	GWGCWC	1 cut(s)	548
BsiHKCI	CYCGRG	3 cut(s)	182, 507, 529
BsiSI	CCGG	4 cut(s)	402, 489, 683, 734
BslI	CCNNNNNNNGG	5 cut(s)	177, 217, 298, 357, 658
BsmAI	GTCTC	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	6 cut(s)	120, 258, 282, 406, 583, 839
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	3 cut(s)	182, 507, 529
Bsp119I	TTCGAA	1 cut(s)	602
Bsp120I	GGGCCC	1 cut(s)	280
Bsp1286I	GDGCHC	6 cut(s)	60, 183, 284, 530, 548, 567
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
BspACI	CCGC	5 cut(s)	114, 171, 463, 584, 800
BspANI	GGCC	6 cut(s)	120, 258, 282, 406, 583, 839
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	169, 282, 535, 566, 687
BspMI	ACCTGC	1 cut(s)	905
BspPI	GGATC	3 cut(s)	473, 511, 674
BspT104I	TTCGAA	1 cut(s)	602
BspTI	CTTAAG	1 cut(s)	785
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	682
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	4 cut(s)	351, 568, 734, 819
BssMI	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	2 cut(s)	569, 618
Bst4CI	ACNGT	4 cut(s)	352, 455, 543, 613
BstAFI	CTTAAG	1 cut(s)	785
BstAUI	TGTACA	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	118, 501, 640, 644
BstDEI	CTNAG	2 cut(s)	5, 911
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	586, 922
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	2 cut(s)	223, 829
BstKTI	GATC	6 cut(s)	11, 439, 468, 519, 669, 931
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 47, 552, 583, 648, 824, 897
BstNI	CCWGG	2 cut(s)	569, 618
BstNSI	RCATGY	2 cut(s)	227, 503
BstSCI	CCNGG	5 cut(s)	401, 488, 567, 616, 733
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	2 cut(s)	284, 548
BstV1I	GCAGC	7 cut(s)	50, 59, 59, 203, 206, 490, 836
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuRI	GGCC	6 cut(s)	120, 258, 282, 406, 583, 839
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	586, 922
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	905
Cac8I	GCNNGC	4 cut(s)	118, 501, 640, 644
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	2 cut(s)	223, 829
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	7 cut(s)	168, 256, 280, 281, 404, 534, 581
Csp6I	GTAC	5 cut(s)	64, 361, 382, 614, 935
CviAII	CATG	5 cut(s)	80, 224, 229, 460, 500
CviQI	GTAC	5 cut(s)	64, 361, 382, 614, 935
DdeI	CTNAG	2 cut(s)	5, 911
DpnI	GATC	6 cut(s)	10, 438, 467, 518, 668, 930
DpnII	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
DraI	TTTAAA	1 cut(s)	904
DraIII	CACNNNGTG	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	819
Eco24I	GRGCYC	5 cut(s)	60, 183, 284, 530, 567
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	168, 534
Eco47III	AGCGCT	1 cut(s)	828
Eco88I	CYCGRG	3 cut(s)	182, 507, 529
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	567, 616
EcoT14I	CCWWGG	1 cut(s)	819
EcoT38I	GRGCYC	5 cut(s)	60, 183, 284, 530, 567
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	5 cut(s)	83, 227, 232, 463, 503
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	5 cut(s)	79, 223, 228, 459, 499
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	8 cut(s)	39, 48, 73, 192, 195, 504, 584, 825
FokI	GGATG	2 cut(s)	573, 909
FriOI	GRGCYC	5 cut(s)	60, 183, 284, 530, 567
Fsp4HI	GCNGC	8 cut(s)	39, 48, 73, 192, 195, 504, 584, 825
FspBI	CTAG	3 cut(s)	51, 552, 875
GlaI	GCGC	2 cut(s)	222, 828
GluI	GCNGC	8 cut(s)	39, 48, 73, 192, 195, 504, 584, 825
GsaI	CCCAGC	2 cut(s)	281, 423
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	6 cut(s)	120, 258, 282, 406, 583, 839
HapII	CCGG	4 cut(s)	402, 489, 683, 734
HhaI	GCGC	2 cut(s)	223, 829
Hin1II	CATG	5 cut(s)	83, 227, 232, 463, 503
Hin6I	GCGC	2 cut(s)	221, 827
HinP1I	GCGC	2 cut(s)	221, 827
HinfI	GANTC	2 cut(s)	27, 320
HpaII	CCGG	4 cut(s)	402, 489, 683, 734
HphI	GGTGA	2 cut(s)	672, 886
Hpy166II	GTNNAC	2 cut(s)	546, 609
Hpy188I	TCNGA	3 cut(s)	8, 666, 844
Hpy188III	TCNNGA	4 cut(s)	184, 229, 440, 926
Hpy8I	GTNNAC	2 cut(s)	546, 609
Hpy99I	CGWCG	2 cut(s)	311, 884
HpyAV	CCTTC	4 cut(s)	129, 137, 181, 622
HpyCH4III	ACNGT	4 cut(s)	352, 455, 543, 613
HpyCH4IV	ACGT	2 cut(s)	309, 471
HpyCH4V	TGCA	5 cut(s)	75, 236, 546, 675, 794
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 47, 552, 583, 648, 824, 897
HpyF3I	CTNAG	2 cut(s)	5, 911
HpySE526I	ACGT	2 cut(s)	309, 471
Hsp92II	CATG	5 cut(s)	83, 227, 232, 463, 503
HspAI	GCGC	2 cut(s)	221, 827
Ksp22I	TGATCA	1 cut(s)	928
Kzo9I	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
LmnI	GCTCC	4 cut(s)	44, 570, 691, 748
Lsp1109I	GCAGC	7 cut(s)	50, 59, 59, 203, 206, 490, 836
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	3 cut(s)	51, 552, 875
MaeII	ACGT	2 cut(s)	309, 471
MaeIII	GTNAC	2 cut(s)	321, 859
MalI	GATC	6 cut(s)	10, 438, 467, 518, 668, 930
MboI	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
MfeI	CAATTG	2 cut(s)	483, 670
MhlI	GDGCHC	6 cut(s)	60, 183, 284, 530, 548, 567
MluCI	AATT	4 cut(s)	203, 483, 670, 690
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	719
MseI	TTAA	3 cut(s)	158, 786, 903
MspA1I	CMGCKG	3 cut(s)	41, 72, 116
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	4 cut(s)	402, 489, 683, 734
MspR9I	CCNGG	5 cut(s)	403, 490, 569, 618, 735
MunI	CAATTG	2 cut(s)	483, 670
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	569, 618
MwoI	GCNNNNNNNGC	7 cut(s)	44, 47, 552, 583, 648, 824, 897
NciI	CCSGG	3 cut(s)	403, 490, 735
NdeII	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
NlaIII	CATG	5 cut(s)	83, 227, 232, 463, 503
NlaIV	GGNNCC	5 cut(s)	169, 282, 535, 566, 687
NmuCI	GTSAC	1 cut(s)	321
NspI	RCATGY	2 cut(s)	227, 503
NspV	TTCGAA	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	503
PagI	TCATGA	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	905
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	8 cut(s)	40, 49, 74, 193, 196, 505, 585, 826
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	567, 616
PspFI	CCCAGC	2 cut(s)	277, 419
PspGI	CCWGG	2 cut(s)	567, 616
PspN4I	GGNNCC	5 cut(s)	169, 282, 535, 566, 687
PspOMI	GGGCCC	1 cut(s)	280
PspPI	GGNCC	7 cut(s)	168, 256, 280, 281, 404, 534, 581
PstNI	CAGNNNCTG	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	455
PvuII	CAGCTG	2 cut(s)	41, 72
RsaI	GTAC	5 cut(s)	65, 362, 383, 615, 936
RsaNI	GTAC	5 cut(s)	64, 361, 382, 614, 935
SaqAI	TTAA	3 cut(s)	158, 786, 903
SatI	GCNGC	8 cut(s)	39, 48, 73, 192, 195, 504, 584, 825
Sau3AI	GATC	6 cut(s)	8, 436, 465, 516, 666, 928
Sau96I	GGNCC	7 cut(s)	168, 256, 280, 281, 404, 534, 581
ScaI	AGTACT	1 cut(s)	936
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	5 cut(s)	403, 490, 569, 618, 735
SduI	GDGCHC	6 cut(s)	60, 183, 284, 530, 548, 567
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	2 cut(s)	168, 534
SmlI	CTYRAG	2 cut(s)	59, 785
SmoI	CTYRAG	2 cut(s)	59, 785
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	4 cut(s)	203, 483, 670, 690
SsiI	CCGC	5 cut(s)	114, 171, 463, 584, 800
SspMI	CTAG	3 cut(s)	51, 552, 875
StyD4I	CCNGG	5 cut(s)	401, 488, 567, 616, 733
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	4 cut(s)	352, 455, 543, 613
TaiI	ACGT	2 cut(s)	312, 474
TaqI	TCGA	6 cut(s)	372, 435, 441, 596, 602, 882
TasI	AATT	4 cut(s)	203, 483, 670, 690
TatI	WGTACW	3 cut(s)	63, 381, 934
TauI	GCSGC	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	3 cut(s)	158, 786, 903
Tru9I	TTAA	3 cut(s)	158, 786, 903
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	7 cut(s)	38, 47, 72, 191, 194, 503, 824
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	861
TspGWI	ACGGA	2 cut(s)	378, 758
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	455
Van91I	CCANNNNNTGG	1 cut(s)	298
Vha464I	CTTAAG	1 cut(s)	785
VneI	GTGCAC	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	168, 534
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	2 cut(s)	227, 503
XspI	CTAG	3 cut(s)	51, 552, 875
ZrmI	AGTACT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.