Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009140.1

Orthogroup ID

OG0012770

Physical Location & Seq

Genomic Coordinates Forward (+)

16378 .. 18169

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009140.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgctcagatcatttgccatcagcagattcaaagaggcagctggagcagctagagggctcaagtactacggcaatcatgttctctgtaagcgaacgagaccttattcaaccgctggccgtactggaaatggaaggctggaaggtaaggtagccttaataacagggtccgcaagtgggctcgggaaggcagcggcccacgaattcatccaaaatggggcgcatgtcatgattgcagacactgattgtgagatgggccaacaagtagctgaagagctgggcccaacagcccactttgtggaatgcgacgttgctgttgagtcacaagtagcacaagctgtagaaacgaccgtggaaaggtacggaaagctcgacataatgtacaacaatgctggaataaccgggccgacaatcccacccagcattgccgacctcgatctcgatgcgtttgaccgtgtcatgcggatcaacgtgaggggaacaattgccgggataaagcatgctgcccgagtgatgatcccattgggctcggggtccatactgtgcacatctagcattactgggctcctgggtgggcttgggccgcatccttactcgatttccaagtttacaataccaggcatagtgaagtctgtggcaagcgagctgtgccgaagtggggttcgaatcaattgcatttcaccggctccaattccaacgcctcttgtggttagggagataagtcggttttatccaggggcaacggaggagcagattatagagatagtgaatggtgtgggagaacttaagggtgcaaaggcggaggcagtagatgtagccaaggcagcgctctatttggcctctgatgaagcaaagtatgtaacaggtcataatctagtagtcgatggaggcttcacctgctttaaaactcttagctttcctcatcctgatcaagtacttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

313

Amino Acids

33.07

Weight (kDa)

7.07

Isoelectric Point (pI)

21.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26770
malus_domestica	MD09G1003900.v1.1 MD17G1007500.v1.1
prunus_persica	Prupe.3G312700_v2.0.a1 Prupe.3G312700_v2.0.a1
pyrus_communis	pycom17g00310
rosa_chinensis	RchiOBHm_Chr2g0176411
rosa_laevigata	RLG00000022411
rosa_multiflora	Rmu_co7987744.1_g000001 Rmu_sc0009140.1_g000006 Rmu_sc0011904.1_g000018
rosa_roxburghii	Rroxscaffold_2G00076470
rosa_rugosa	Rorug02G0594000
rosa_samantha	Rh2AG672500 Rh2BG684000 Rh2CG646700 Rh2DG697500
rosa_wichuraiana	Rw2G055160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	902
Acc36I	ACCTGC	1 cut(s)	902
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	6 cut(s)	111, 168, 191, 460, 581, 797
AclWI	GGATC	2 cut(s)	470, 508
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	295
AfaI	GTAC	5 cut(s)	65, 121, 359, 380, 933
AfeI	AGCGCT	1 cut(s)	825
AfiI	CCNNNNNNNGG	5 cut(s)	174, 214, 295, 354, 655
AflII	CTTAAG	1 cut(s)	782
AgsI	TTSAA	2 cut(s)	31, 108
AjnI	CCWGG	3 cut(s)	564, 613, 730
AluBI	AGCT	8 cut(s)	41, 50, 266, 274, 335, 367, 643, 912
AluI	AGCT	8 cut(s)	41, 50, 266, 274, 335, 367, 643, 912
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	470, 508
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	3 cut(s)	179, 504, 526
Aor51HI	AGCGCT	1 cut(s)	825
AoxI	GGCC	7 cut(s)	115, 192, 253, 277, 401, 578, 834
ApaI	GGGCCC	1 cut(s)	281
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	5 cut(s)	38, 47, 188, 500, 821
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	220, 826
AspS9I	GGNCC	8 cut(s)	165, 193, 253, 277, 278, 401, 531, 578
AsuC2I	CCSGG	2 cut(s)	400, 487
AsuHPI	GGTGA	2 cut(s)	669, 883
AsuII	TTCGAA	1 cut(s)	661
AvaI	CYCGRG	3 cut(s)	179, 504, 526
AvaII	GGWCC	2 cut(s)	165, 531
BaeGI	GKGCMC	2 cut(s)	281, 545
BanII	GRGCYC	5 cut(s)	60, 180, 281, 527, 564
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	5 cut(s)	50, 59, 200, 487, 833
BccI	CCATC	3 cut(s)	26, 244, 875
BceAI	ACGGC	2 cut(s)	85, 102
BcgI	CGANNNNNNTGC	4 cut(s)	422, 456, 651, 685
BciT130I	CCWGG	3 cut(s)	566, 615, 732
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	2 cut(s)	400, 487
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	51, 549, 872
BfmI	CTRYAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	827
BfrI	CTTAAG	1 cut(s)	782
BfuAI	ACCTGC	1 cut(s)	902
BisI	GCNGC	7 cut(s)	39, 48, 189, 192, 501, 581, 822
BlsI	GCNGC	7 cut(s)	40, 49, 190, 193, 502, 582, 823
BmcAI	AGTACT	2 cut(s)	65, 933
Bme1390I	CCNGG	5 cut(s)	400, 487, 566, 615, 732
Bme18I	GGWCC	2 cut(s)	165, 531
BmeT110I	CYCGRG	3 cut(s)	179, 504, 526
BmgT120I	GGNCC	8 cut(s)	165, 193, 253, 277, 278, 401, 531, 578
BmiI	GGNNCC	5 cut(s)	166, 279, 532, 563, 684
BmrFI	CCNGG	5 cut(s)	400, 487, 566, 615, 732
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	430, 592
BmuI	ACTGGG	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	400, 487
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	4 cut(s)	348, 565, 731, 816
Bsc4I	CCNNNNNNNGG	5 cut(s)	174, 214, 295, 354, 655
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	127, 562
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	566, 615, 732
BseDI	CCNNGG	4 cut(s)	348, 565, 731, 816
BseGI	GGATG	3 cut(s)	204, 583, 919
BseLI	CCNNNNNNNGG	5 cut(s)	174, 214, 295, 354, 655
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	127, 562
BseRI	GAGGAG	1 cut(s)	758
BseSI	GKGCMC	2 cut(s)	281, 545
BseXI	GCAGC	5 cut(s)	50, 59, 200, 487, 833
BseYI	CCCAGC	2 cut(s)	274, 416
Bsh1285I	CGRYCG	1 cut(s)	348
BshFI	GGCC	7 cut(s)	117, 194, 255, 279, 403, 580, 836
BsiEI	CGRYCG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	3 cut(s)	179, 504, 526
BsiSI	CCGG	3 cut(s)	399, 486, 680
BslI	CCNNNNNNNGG	5 cut(s)	174, 214, 295, 354, 655
BsmAI	GTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	7 cut(s)	117, 194, 255, 279, 403, 580, 836
Bso31I	GGTCTC	1 cut(s)	91
BsoBI	CYCGRG	3 cut(s)	179, 504, 526
Bsp119I	TTCGAA	1 cut(s)	661
Bsp120I	GGGCCC	1 cut(s)	277
Bsp1286I	GDGCHC	6 cut(s)	60, 180, 281, 527, 545, 564
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	8, 433, 462, 513, 925
BspACI	CCGC	6 cut(s)	111, 168, 191, 460, 581, 797
BspANI	GGCC	7 cut(s)	117, 194, 255, 279, 403, 580, 836
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	5 cut(s)	166, 279, 532, 563, 684
BspMI	ACCTGC	1 cut(s)	902
BspPI	GGATC	2 cut(s)	470, 508
BspQI	GCTCTTC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	661
BspTI	CTTAAG	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	679
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	127, 562
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	4 cut(s)	348, 565, 731, 816
BssMI	GATC	5 cut(s)	8, 433, 462, 513, 925
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	3 cut(s)	566, 615, 732
Bst4CI	ACNGT	3 cut(s)	349, 452, 540
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	661
BstC8I	GCNNGC	4 cut(s)	115, 498, 637, 641
BstDEI	CTNAG	2 cut(s)	5, 908
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	204, 583, 919
BstH2I	RGCGCY	1 cut(s)	827
BstHHI	GCGC	2 cut(s)	220, 826
BstKTI	GATC	5 cut(s)	11, 436, 465, 516, 928
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	8, 433, 462, 513, 925
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 47, 549, 580, 645, 821, 894
BstNI	CCWGG	3 cut(s)	566, 615, 732
BstNSI	RCATGY	2 cut(s)	224, 500
BstSCI	CCNGG	5 cut(s)	398, 485, 564, 613, 730
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	2 cut(s)	281, 545
BstV1I	GCAGC	5 cut(s)	50, 59, 200, 487, 833
BsuRI	GGCC	7 cut(s)	117, 194, 255, 279, 403, 580, 836
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	204, 583, 919
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	902
Cac8I	GCNNGC	4 cut(s)	115, 498, 637, 641
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	2 cut(s)	220, 826
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	8 cut(s)	165, 193, 253, 277, 278, 401, 531, 578
Csp6I	GTAC	5 cut(s)	64, 120, 358, 379, 932
CviAII	CATG	5 cut(s)	77, 221, 226, 457, 497
CviQI	GTAC	5 cut(s)	64, 120, 358, 379, 932
DdeI	CTNAG	2 cut(s)	5, 908
DpnI	GATC	5 cut(s)	10, 435, 464, 515, 927
DpnII	GATC	5 cut(s)	8, 433, 462, 513, 925
DraI	TTTAAA	1 cut(s)	901
DraIII	CACNNNGTG	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	816
Eco24I	GRGCYC	5 cut(s)	60, 180, 281, 527, 564
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	165, 531
Eco47III	AGCGCT	1 cut(s)	825
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	3 cut(s)	179, 504, 526
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	3 cut(s)	564, 613, 730
EcoT14I	CCWWGG	1 cut(s)	816
EcoT38I	GRGCYC	5 cut(s)	60, 180, 281, 527, 564
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	5 cut(s)	80, 224, 229, 460, 500
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	5 cut(s)	76, 220, 225, 456, 496
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	7 cut(s)	39, 48, 189, 192, 501, 581, 822
FokI	GGATG	3 cut(s)	191, 570, 906
FriOI	GRGCYC	5 cut(s)	60, 180, 281, 527, 564
Fsp4HI	GCNGC	7 cut(s)	39, 48, 189, 192, 501, 581, 822
FspBI	CTAG	3 cut(s)	51, 549, 872
GlaI	GCGC	2 cut(s)	219, 825
GluI	GCNGC	7 cut(s)	39, 48, 189, 192, 501, 581, 822
GsaI	CCCAGC	2 cut(s)	278, 420
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	827
HaeIII	GGCC	7 cut(s)	117, 194, 255, 279, 403, 580, 836
HapII	CCGG	3 cut(s)	399, 486, 680
HhaI	GCGC	2 cut(s)	220, 826
Hin1II	CATG	5 cut(s)	80, 224, 229, 460, 500
Hin6I	GCGC	2 cut(s)	218, 824
HinP1I	GCGC	2 cut(s)	218, 824
HinfI	GANTC	3 cut(s)	27, 317, 663
HpaII	CCGG	3 cut(s)	399, 486, 680
HphI	GGTGA	2 cut(s)	669, 883
Hpy166II	GTNNAC	2 cut(s)	543, 606
Hpy188I	TCNGA	2 cut(s)	8, 841
Hpy188III	TCNNGA	4 cut(s)	181, 226, 437, 923
Hpy8I	GTNNAC	2 cut(s)	543, 606
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	126, 134, 178
HpyCH4III	ACNGT	3 cut(s)	349, 452, 540
HpyCH4IV	ACGT	2 cut(s)	306, 468
HpyCH4V	TGCA	4 cut(s)	233, 543, 672, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 47, 549, 580, 645, 821, 894
HpyF3I	CTNAG	2 cut(s)	5, 908
HpySE526I	ACGT	2 cut(s)	306, 468
Hsp92II	CATG	5 cut(s)	80, 224, 229, 460, 500
HspAI	GCGC	2 cut(s)	218, 824
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	5 cut(s)	8, 433, 462, 513, 925
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	44, 567, 688, 745
Lsp1109I	GCAGC	5 cut(s)	50, 59, 200, 487, 833
LweI	GCATC	2 cut(s)	430, 592
MaeI	CTAG	3 cut(s)	51, 549, 872
MaeII	ACGT	2 cut(s)	306, 468
MaeIII	GTNAC	2 cut(s)	318, 856
MalI	GATC	5 cut(s)	10, 435, 464, 515, 927
MboI	GATC	5 cut(s)	8, 433, 462, 513, 925
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	2 cut(s)	480, 667
MhlI	GDGCHC	6 cut(s)	60, 180, 281, 527, 545, 564
MluCI	AATT	4 cut(s)	200, 480, 667, 687
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	716
MseI	TTAA	3 cut(s)	155, 783, 900
MspA1I	CMGCKG	3 cut(s)	41, 113, 191
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	3 cut(s)	399, 486, 680
MspR9I	CCNGG	5 cut(s)	400, 487, 566, 615, 732
MunI	CAATTG	2 cut(s)	480, 667
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	3 cut(s)	566, 615, 732
MwoI	GCNNNNNNNGC	7 cut(s)	44, 47, 549, 580, 645, 821, 894
NciI	CCSGG	2 cut(s)	400, 487
NdeII	GATC	5 cut(s)	8, 433, 462, 513, 925
NlaIII	CATG	5 cut(s)	80, 224, 229, 460, 500
NlaIV	GGNNCC	5 cut(s)	166, 279, 532, 563, 684
NmuCI	GTSAC	1 cut(s)	318
NspI	RCATGY	2 cut(s)	224, 500
NspV	TTCGAA	1 cut(s)	661
PaeI	GCATGC	1 cut(s)	500
PagI	TCATGA	1 cut(s)	225
PaqCI	CACCTGC	1 cut(s)	902
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	27, 663
PflFI	GACNNNGTC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	7 cut(s)	40, 49, 190, 193, 502, 582, 823
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp6I	CCWGG	3 cut(s)	564, 613, 730
PspFI	CCCAGC	2 cut(s)	274, 416
PspGI	CCWGG	3 cut(s)	564, 613, 730
PspN4I	GGNNCC	5 cut(s)	166, 279, 532, 563, 684
PspOMI	GGGCCC	1 cut(s)	277
PspPI	GGNCC	8 cut(s)	165, 193, 253, 277, 278, 401, 531, 578
PstNI	CAGNNNCTG	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	5 cut(s)	65, 121, 359, 380, 933
RsaNI	GTAC	5 cut(s)	64, 120, 358, 379, 932
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	3 cut(s)	155, 783, 900
SatI	GCNGC	7 cut(s)	39, 48, 189, 192, 501, 581, 822
Sau3AI	GATC	5 cut(s)	8, 433, 462, 513, 925
Sau96I	GGNCC	8 cut(s)	165, 193, 253, 277, 278, 401, 531, 578
ScaI	AGTACT	2 cut(s)	65, 933
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	5 cut(s)	400, 487, 566, 615, 732
SduI	GDGCHC	6 cut(s)	60, 180, 281, 527, 545, 564
SfaNI	GCATC	2 cut(s)	430, 592
SfcI	CTRYAG	1 cut(s)	336
SfuI	TTCGAA	1 cut(s)	661
SinI	GGWCC	2 cut(s)	165, 531
SmlI	CTYRAG	2 cut(s)	59, 782
SmoI	CTYRAG	2 cut(s)	59, 782
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	4 cut(s)	200, 480, 667, 687
SsiI	CCGC	6 cut(s)	111, 168, 191, 460, 581, 797
SspMI	CTAG	3 cut(s)	51, 549, 872
StyD4I	CCNGG	5 cut(s)	398, 485, 564, 613, 730
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	3 cut(s)	349, 452, 540
TaiI	ACGT	2 cut(s)	309, 471
TaqI	TCGA	6 cut(s)	369, 432, 438, 593, 661, 879
TasI	AATT	4 cut(s)	200, 480, 667, 687
TatI	WGTACW	3 cut(s)	63, 378, 931
TauI	GCSGC	2 cut(s)	194, 583
TfiI	GAWTC	2 cut(s)	27, 663
Tru1I	TTAA	3 cut(s)	155, 783, 900
Tru9I	TTAA	3 cut(s)	155, 783, 900
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	318
TseI	GCWGC	5 cut(s)	38, 47, 188, 500, 821
Tsp45I	GTSAC	1 cut(s)	318
TspDTI	ATGAA	2 cut(s)	193, 858
TspGWI	ACGGA	2 cut(s)	375, 755
TspRI	CASTG	1 cut(s)	244
Tth111I	GACNNNGTC	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	782
VneI	GTGCAC	1 cut(s)	541
VpaK11BI	GGWCC	2 cut(s)	165, 531
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	224, 500
XspI	CTAG	3 cut(s)	51, 549, 872
ZrmI	AGTACT	2 cut(s)	65, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.