Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012770

Physical Location & Seq

Genomic Coordinates Reverse (-)

493219 .. 494193

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1007500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACTGATCTTGTCTTTTCATTGCATATTCAACACGCGTGTTGTTCCTTTCTTTTCTTGCCTTTTATTTTTCCGAGTACATTAACATTAAAGTTGGAAGGCAAGGTAGCCATAATAACAGGATCAGCTAGCGGGCTTGGGAAGGCCACGGCCCACGAGTTCATCCGACATGGAGCACACGTCATCATTGCAGACTCAGATTCTGAGCTGGGTCCACAAGTTGCCAAAGAGCTGGGCCCCGCAGCCTACTTTGTCCAGTGCGACGTTACCATTGAGTCCCAGATAGCAGAGGCTGTAGAAACCGCCATGGCCCGTCATGGAAAACTTGACATAATGTACAACAACGCGGGAATAACAGGCCCAGCATTCCCGCCCAGCATCGCTGACCTGAACCTTGAAGAGTTTGACAGAGTGATCCGGGTCAACTTGAGGGGCGCGGTTGCTGGGATAAAGCATGCGGCCCGAGTCATGAAACCTGCGGGCTCAGGCTCCATACTGTGCACGTCCAGCATAGCTGGGCTGTTGGGTGGCCTTGGGCCTCACTCCTACTCGATATCGAAATTTACGATACCTGGCCTGGTGAAATCACTGGCGAGCGAGCTGTGCCGAAACGGGATCCGAGTCAATTGCATATCGCCGGGTCCAATACCGACGCCAATGGCGGTGCGGGAAATAAAGCAGTTTTATCCGGGGGCAACGGAGGAGCAAGTTAAAGAGATAGTGAATGGGCTGGGAGAGCTCAAGGGTGCGAAGTGTGAGGAGATAGATGTGGCGCAAGCGGCGGTGTATCTGGCGTCGGATGAAGCAAAATATGTGACGGGTCATAATCTAGTGCTGGATGGAGGGTTCACCAGCTTCAAAAGTCTTAGCTTCCCTTCTTCTCGGGATCAACCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

300

Amino Acids

31.65

Weight (kDa)

6.14

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 223	5.5e-51	short chain dehydrogenase
KR	PF08659	38 - 197	1.5e-11	KR domain
adh_short_C2	PF13561	41 - 284	5.7e-61	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26770
malus_domestica	MD09G1003900.v1.1 MD17G1007500.v1.1
prunus_persica	Prupe.3G312700_v2.0.a1 Prupe.3G312700_v2.0.a1
pyrus_communis	pycom17g00310
rosa_chinensis	RchiOBHm_Chr2g0176411
rosa_laevigata	RLG00000022411
rosa_multiflora	Rmu_co7987744.1_g000001 Rmu_sc0009140.1_g000006 Rmu_sc0011904.1_g000018
rosa_roxburghii	Rroxscaffold_2G00076470
rosa_rugosa	Rorug02G0594000
rosa_samantha	Rh2AG672500 Rh2BG684000 Rh2CG646700 Rh2DG697500
rosa_wichuraiana	Rw2G055160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccII	CGCG	3 cut(s)	38, 347, 437
AclWI	GGATC	5 cut(s)	130, 409, 610, 623, 894
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	2 cut(s)	653, 794
AfaI	GTAC	2 cut(s)	79, 338
AflIII	ACRYGT	2 cut(s)	36, 178
AgsI	TTSAA	3 cut(s)	32, 398, 859
AjiI	CACGTC	2 cut(s)	181, 504
AjnI	CCWGG	2 cut(s)	571, 576
AloI	GAACNNNNNNTCC	2 cut(s)	830, 862
AluBI	AGCT	8 cut(s)	128, 208, 232, 515, 601, 739, 855, 870
AluI	AGCT	8 cut(s)	128, 208, 232, 515, 601, 739, 855, 870
Alw21I	GWGCWC	3 cut(s)	178, 503, 741
Alw44I	GTGCAC	1 cut(s)	499
AlwI	GGATC	5 cut(s)	130, 409, 610, 623, 894
AlwNI	CAGNNNCTG	2 cut(s)	203, 293
Ama87I	CYCGRG	2 cut(s)	462, 882
AoxI	GGCC	9 cut(s)	144, 150, 235, 309, 358, 459, 529, 536, 574
ApaI	GGGCCC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	2 cut(s)	437, 775
AspS9I	GGNCC	9 cut(s)	151, 212, 235, 236, 310, 359, 460, 536, 641
AsuC2I	CCSGG	3 cut(s)	419, 639, 690
AsuHPI	GGTGA	2 cut(s)	592, 841
AsuNHI	GCTAGC	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	462, 882
AvaII	GGWCC	2 cut(s)	212, 641
BaeGI	GKGCMC	2 cut(s)	239, 503
BamHI	GGATCC	1 cut(s)	615
BanII	GRGCYC	3 cut(s)	239, 485, 741
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	3 cut(s)	178, 503, 741
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	833
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	2 cut(s)	573, 578
BcnI	CCSGG	3 cut(s)	419, 639, 690
BfaI	CTAG	2 cut(s)	129, 830
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	3 cut(s)	243, 459, 780
BlsI	GCNGC	3 cut(s)	244, 460, 781
Bme1390I	CCNGG	5 cut(s)	419, 573, 578, 639, 690
Bme18I	GGWCC	2 cut(s)	212, 641
BmeT110I	CYCGRG	2 cut(s)	462, 882
BmgBI	CACGTC	2 cut(s)	181, 504
BmgT120I	GGNCC	9 cut(s)	151, 212, 235, 236, 310, 359, 460, 536, 641
BmiI	GGNNCC	6 cut(s)	213, 237, 238, 490, 617, 642
BmrFI	CCNGG	5 cut(s)	419, 573, 578, 639, 690
BmsI	GCATC	1 cut(s)	387
BmtI	GCTAGC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	484
BpuEI	CTTGAG	2 cut(s)	448, 725
BpuMI	CCSGG	3 cut(s)	419, 639, 690
BsaHI	GRCGYC	2 cut(s)	653, 794
BsaJI	CCNNGG	4 cut(s)	147, 306, 532, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse1I	ACTGG	2 cut(s)	256, 594
Bse3DI	GCAATG	2 cut(s)	20, 186
BseBI	CCWGG	2 cut(s)	573, 578
BseDI	CCNNGG	4 cut(s)	147, 306, 532, 689
BseGI	GGATG	3 cut(s)	162, 805, 844
BseMI	GCAATG	2 cut(s)	20, 186
BseMII	CTCAG	3 cut(s)	195, 210, 498
BseNI	ACTGG	2 cut(s)	256, 594
BseRI	GAGGAG	2 cut(s)	716, 773
BseSI	GKGCMC	2 cut(s)	239, 503
BseXI	GCAGC	1 cut(s)	254
BseYI	CCCAGC	7 cut(s)	208, 232, 361, 374, 443, 515, 730
Bsh1236I	CGCG	3 cut(s)	38, 347, 437
BshFI	GGCC	9 cut(s)	146, 152, 237, 311, 360, 461, 531, 538, 576
BsiHKAI	GWGCWC	3 cut(s)	178, 503, 741
BsiHKCI	CYCGRG	2 cut(s)	462, 882
BsiSI	CCGG	3 cut(s)	418, 638, 689
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	9 cut(s)	146, 152, 237, 311, 360, 461, 531, 538, 576
BsoBI	CYCGRG	2 cut(s)	462, 882
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	5 cut(s)	178, 239, 485, 503, 741
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	7, 122, 414, 615, 886
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	9 cut(s)	146, 152, 237, 311, 360, 461, 531, 538, 576
BspCNI	CTCAG	3 cut(s)	196, 209, 497
BspFNI	CGCG	3 cut(s)	38, 347, 437
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	6 cut(s)	213, 237, 238, 490, 617, 642
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	5 cut(s)	130, 409, 610, 623, 894
BsrDI	GCAATG	2 cut(s)	20, 186
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	256, 594
BssECI	CCNNGG	4 cut(s)	147, 306, 532, 689
BssMI	GATC	5 cut(s)	7, 122, 414, 615, 886
BssNI	GRCGYC	2 cut(s)	653, 794
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	306, 532
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	573, 578
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	2 cut(s)	653, 794
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	7 cut(s)	130, 134, 456, 481, 595, 599, 777
BstDEI	CTNAG	4 cut(s)	196, 204, 484, 866
BstDSI	CCRYGG	2 cut(s)	147, 306
BstF5I	GGATG	3 cut(s)	162, 805, 844
BstFNI	CGCG	3 cut(s)	38, 347, 437
BstHHI	GCGC	2 cut(s)	437, 775
BstKTI	GATC	5 cut(s)	10, 125, 417, 618, 889
BstMBI	GATC	5 cut(s)	7, 122, 414, 615, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	507, 603, 736, 779
BstNI	CCWGG	2 cut(s)	573, 578
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	5 cut(s)	417, 571, 576, 637, 688
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	2 cut(s)	239, 503
BstUI	CGCG	3 cut(s)	38, 347, 437
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	615
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	9 cut(s)	146, 152, 237, 311, 360, 461, 531, 538, 576
BtgI	CCRYGG	2 cut(s)	147, 306
BtgZI	GCGATG	1 cut(s)	364
BtrI	CACGTC	2 cut(s)	181, 504
BtsCI	GGATG	3 cut(s)	162, 805, 844
BtsIMutI	CAGTG	2 cut(s)	263, 587
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	7 cut(s)	130, 134, 456, 481, 595, 599, 777
CaiI	CAGNNNCTG	2 cut(s)	203, 293
CciI	TCATGA	1 cut(s)	468
CfoI	GCGC	2 cut(s)	437, 775
Cfr13I	GGNCC	9 cut(s)	151, 212, 235, 236, 310, 359, 460, 536, 641
CseI	GACGC	2 cut(s)	661, 783
Csp6I	GTAC	2 cut(s)	78, 337
CviAII	CATG	5 cut(s)	170, 307, 317, 455, 469
CviQI	GTAC	2 cut(s)	78, 337
DdeI	CTNAG	4 cut(s)	196, 204, 484, 866
DpnI	GATC	5 cut(s)	9, 124, 416, 617, 888
DpnII	GATC	5 cut(s)	7, 122, 414, 615, 886
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	2 cut(s)	306, 532
Eco24I	GRGCYC	3 cut(s)	239, 485, 741
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	2 cut(s)	212, 641
Eco53kI	GAGCTC	1 cut(s)	739
Eco88I	CYCGRG	2 cut(s)	462, 882
EcoICRI	GAGCTC	1 cut(s)	739
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	571, 576
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	2 cut(s)	306, 532
EcoT38I	GRGCYC	3 cut(s)	239, 485, 741
ErhI	CCWWGG	2 cut(s)	306, 532
FaeI	CATG	5 cut(s)	173, 310, 320, 458, 472
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	5 cut(s)	169, 306, 316, 454, 468
FauI	CCCGC	6 cut(s)	125, 247, 340, 378, 472, 660
Fnu4HI	GCNGC	3 cut(s)	243, 459, 780
FokI	GGATG	3 cut(s)	149, 812, 851
FriOI	GRGCYC	3 cut(s)	239, 485, 741
Fsp4HI	GCNGC	3 cut(s)	243, 459, 780
FspBI	CTAG	2 cut(s)	129, 830
GlaI	GCGC	2 cut(s)	436, 774
GluI	GCNGC	3 cut(s)	243, 459, 780
GsaI	CCCAGC	7 cut(s)	212, 236, 365, 378, 447, 519, 734
HaeIII	GGCC	9 cut(s)	146, 152, 237, 311, 360, 461, 531, 538, 576
HapII	CCGG	3 cut(s)	418, 638, 689
HgaI	GACGC	2 cut(s)	661, 783
HhaI	GCGC	2 cut(s)	437, 775
Hin1I	GRCGYC	2 cut(s)	653, 794
Hin1II	CATG	5 cut(s)	173, 310, 320, 458, 472
Hin6I	GCGC	2 cut(s)	435, 773
HinP1I	GCGC	2 cut(s)	435, 773
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	194, 200, 275, 465, 621
HpaII	CCGG	3 cut(s)	418, 638, 689
HphI	GGTGA	2 cut(s)	592, 841
Hpy166II	GTNNAC	4 cut(s)	215, 424, 501, 849
Hpy188I	TCNGA	6 cut(s)	75, 167, 199, 205, 620, 799
Hpy188III	TCNNGA	2 cut(s)	469, 884
Hpy8I	GTNNAC	4 cut(s)	215, 424, 501, 849
Hpy99I	CGWCG	3 cut(s)	266, 655, 799
HpyAV	CCTTC	3 cut(s)	92, 136, 885
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	3 cut(s)	180, 264, 503
HpyCH4V	TGCA	4 cut(s)	25, 191, 501, 630
HpyF10VI	GCNNNNNNNGC	4 cut(s)	507, 603, 736, 779
HpyF3I	CTNAG	4 cut(s)	196, 204, 484, 866
HpySE526I	ACGT	3 cut(s)	180, 264, 503
Hsp92I	GRCGYC	2 cut(s)	653, 794
Hsp92II	CATG	5 cut(s)	173, 310, 320, 458, 472
HspAI	GCGC	2 cut(s)	435, 773
Kzo9I	GATC	5 cut(s)	7, 122, 414, 615, 886
LmnI	GCTCC	3 cut(s)	173, 494, 703
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	129, 830
MaeII	ACGT	3 cut(s)	180, 264, 503
MaeIII	GTNAC	2 cut(s)	265, 814
MalI	GATC	5 cut(s)	9, 124, 416, 617, 888
MboI	GATC	5 cut(s)	7, 122, 414, 615, 886
MboII	GAAGA	2 cut(s)	410, 870
MfeI	CAATTG	1 cut(s)	625
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	5 cut(s)	178, 239, 485, 503, 741
MluCI	AATT	2 cut(s)	560, 625
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	4 cut(s)	188, 284, 474, 630
MmeI	TCCRAC	3 cut(s)	75, 190, 777
MnlI	CCTC	6 cut(s)	283, 423, 549, 694, 751, 836
MseI	TTAA	3 cut(s)	83, 89, 711
MspI	CCGG	3 cut(s)	418, 638, 689
MspR9I	CCNGG	5 cut(s)	419, 573, 578, 639, 690
MunI	CAATTG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	2 cut(s)	573, 578
MvnI	CGCG	3 cut(s)	38, 347, 437
MwoI	GCNNNNNNNGC	4 cut(s)	507, 603, 736, 779
NciI	CCSGG	3 cut(s)	419, 639, 690
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	7, 122, 414, 615, 886
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	5 cut(s)	173, 310, 320, 458, 472
NlaIV	GGNNCC	6 cut(s)	213, 237, 238, 490, 617, 642
NmuCI	GTSAC	1 cut(s)	814
NspI	RCATGY	1 cut(s)	458
PaeI	GCATGC	1 cut(s)	458
PagI	TCATGA	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	244, 460, 781
PleI	GAGTC	4 cut(s)	188, 283, 473, 629
PpsI	GAGTC	4 cut(s)	188, 283, 473, 629
Psp124BI	GAGCTC	1 cut(s)	741
Psp6I	CCWGG	2 cut(s)	571, 576
PspFI	CCCAGC	7 cut(s)	208, 232, 361, 374, 443, 515, 730
PspGI	CCWGG	2 cut(s)	571, 576
PspN4I	GGNNCC	6 cut(s)	213, 237, 238, 490, 617, 642
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	9 cut(s)	151, 212, 235, 236, 310, 359, 460, 536, 641
PstNI	CAGNNNCTG	2 cut(s)	203, 293
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	2 cut(s)	79, 338
RsaNI	GTAC	2 cut(s)	78, 337
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	83, 89, 711
SatI	GCNGC	3 cut(s)	243, 459, 780
Sau3AI	GATC	5 cut(s)	7, 122, 414, 615, 886
Sau96I	GGNCC	9 cut(s)	151, 212, 235, 236, 310, 359, 460, 536, 641
SchI	GAGTC	4 cut(s)	188, 284, 474, 630
ScrFI	CCNGG	5 cut(s)	419, 573, 578, 639, 690
SduI	GDGCHC	5 cut(s)	178, 239, 485, 503, 741
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	2 cut(s)	212, 641
SmlI	CTYRAG	2 cut(s)	427, 740
SmoI	CTYRAG	2 cut(s)	427, 740
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	2 cut(s)	560, 625
SspMI	CTAG	2 cut(s)	129, 830
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	5 cut(s)	417, 571, 576, 637, 688
StyI	CCWWGG	2 cut(s)	306, 532
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	3 cut(s)	183, 267, 506
TaqI	TCGA	2 cut(s)	551, 557
TasI	AATT	2 cut(s)	560, 625
TatI	WGTACW	2 cut(s)	77, 336
TauI	GCSGC	2 cut(s)	461, 782
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	83, 89, 711
Tru9I	TTAA	3 cut(s)	83, 89, 711
TscAI	CASTG	2 cut(s)	263, 594
TseFI	GTSAC	1 cut(s)	814
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	814
TspDTI	ATGAA	4 cut(s)	9, 151, 485, 816
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	2 cut(s)	263, 594
VneI	GTGCAC	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	212, 641
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	2 cut(s)	129, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.