Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005961

Physical Location & Seq

Genomic Coordinates Reverse (-)

10285657 .. 10287931

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAATCTTGAGAATGTTTTGGAATTCACCAGCTTTGATTACTGGTTTAATTGGAGAGTGTTACTATGTGCTATATGGGTAATAGTTCCAATGATTGTTTCTTTATTAGTCTTATGGAAGTATGAAGATAGTTCAGTTCAAACTCAACCATCACTTAATGGTAATGATGTTTTGTGCATTGATGATGTTTGGAGACCTTGTTTTGAACGAATCCATCCGGGTTGGTTGTTGGGTTTTCGGGTTCTCGGGTTTTGTTTCCTTCTTGCTAACAATATTGCCCGGTTTGCTAATCGTGGATGGCGTATTTACTACTATTATACTCAGTGGACATTCACTTTGATAGCAATCTACTTCGGGATGGGATCATTGCTTTCAATTTATGGATGTTTACAATACAAGAAGCAAGGGAACACTGGACTTATCGCTGATCAAGTAGGAATCGATGCAGAGAACGGGTTTCGTTCGCCTCTTATAGATGGTGACAACATGGTTTCGTTCGAGAAGAGAAAAACTTCTGGTTCGGAAGCACTAAAGTCATATGTTCATCTCTTCCAGATTATATATCAGATGGGTGCTGGAGCAGCTGTGCTTACAGACAGTATATATTGGACCGTGATTTTCCCGTTTCTGTCTTTACAGGACTATGAGATGAGTTTCATGACTGTGAATTTGCACACAAGCAACCTCGTTTTGCTGCTTATTGACACGTTTCTAAACCGTCTGAAATTTCCATTGTTCAGGTTCTCTTACTTCATCTTATGGACAGGATGTTTCGTTCTTTTCCAGTGGATTCTCCACATGTTTATCTCCGTTGGGTGGCCATATCCATTTCTCAACCTGTCATTAGACATGGCTCCAGTGTGGTATTTGTTGGTGGCACTCCTGCATCTTCCTTCTTATGGCCTCTTTGCATTAATCGTCAAAATCAAATACAAACTCATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

36.71

Weight (kDa)

6.94

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27770 AT3G27770
fragaria_vesca	FvH4_6g51020 FvH4_6g51020 FvH4_6g51020 FvH4_6g51020
malus_domestica	MD09G1029400.v1.1
prunus_persica	Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1
pyrus_communis	pycom111g02340
rosa_chinensis	RchiOBHm_Chr2g0172561
rosa_laevigata	RLG00000016015 RLG00000021672 RLG00000022116
rosa_multiflora	Rmu_sc0000912.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079760
rosa_rugosa	Rorug02G0559900.1 Rorug02G0560000
rosa_samantha	Rh2AG636000 Rh2BG649400 Rh2CG616200 Rh2DG663800 Rh3AG202400
rosa_wichuraiana	Rw2G052620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	818
AcsI	RAATTY	3 cut(s)	23, 667, 725
AfiI	CCNNNNNNNGG	2 cut(s)	816, 899
AflIII	ACRYGT	2 cut(s)	705, 798
AgsI	TTSAA	3 cut(s)	140, 206, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
AluBI	AGCT	2 cut(s)	33, 584
AluI	AGCT	2 cut(s)	33, 584
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	818, 901
ApeKI	GCWGC	2 cut(s)	581, 694
ApoI	RAATTY	3 cut(s)	23, 667, 725
ArsI	GACNNNNNNTTYG	4 cut(s)	319, 351, 652, 684
AseI	ATTAAT	1 cut(s)	914
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	609
AsuC2I	CCSGG	2 cut(s)	219, 280
AsuHPI	GGTGA	2 cut(s)	19, 491
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	820
BbvI	GCAGC	2 cut(s)	593, 681
BccI	CCATC	6 cut(s)	157, 222, 291, 352, 470, 562
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	2 cut(s)	219, 280
BcoDI	GTCTC	1 cut(s)	187
BisI	GCNGC	2 cut(s)	582, 695
BlsI	GCNGC	2 cut(s)	583, 696
Bme1390I	CCNGG	2 cut(s)	219, 280
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	2 cut(s)	219, 280
BmsI	GCATC	2 cut(s)	433, 895
BpmI	CTGGAG	2 cut(s)	597, 840
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	219, 280
Bsa29I	ATCGAT	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 570, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	816, 899
Bse1I	ACTGG	4 cut(s)	47, 418, 784, 857
Bse3DI	GCAATG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	441
BseGI	GGATG	5 cut(s)	214, 302, 363, 389, 773
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	816, 899
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	4 cut(s)	47, 418, 784, 857
BseXI	GCAGC	2 cut(s)	593, 681
BshFI	GGCC	2 cut(s)	820, 903
BshVI	ATCGAT	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	218, 280
BslI	CCNNNNNNNGG	2 cut(s)	816, 899
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	820, 903
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	362, 427
BspANI	GGCC	2 cut(s)	820, 903
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	855
BspPI	GGATC	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	4 cut(s)	47, 418, 784, 857
BssMI	GATC	2 cut(s)	362, 427
Bst4CI	ACNGT	4 cut(s)	599, 613, 664, 719
Bst6I	CTCTTC	2 cut(s)	497, 554
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	5 cut(s)	214, 302, 363, 389, 773
BstKTI	GATC	2 cut(s)	365, 430
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	362, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 581
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	2 cut(s)	217, 278
BstV1I	GCAGC	2 cut(s)	593, 681
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	820, 903
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	5 cut(s)	214, 302, 363, 389, 773
BtsIMutI	CAGTG	4 cut(s)	329, 411, 791, 864
CciI	TCATGA	1 cut(s)	657
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	441
CviAII	CATG	4 cut(s)	487, 658, 799, 850
CviJI	RGCY	5 cut(s)	33, 584, 820, 854, 903
CviKI_1	RGCY	5 cut(s)	33, 584, 820, 854, 903
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	364, 429
DpnII	GATC	2 cut(s)	362, 427
EaeI	YGGCCR	1 cut(s)	818
Eam1104I	CTCTTC	2 cut(s)	497, 554
EarI	CTCTTC	2 cut(s)	497, 554
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	23
FaeI	CATG	4 cut(s)	490, 661, 802, 853
FatI	CATG	4 cut(s)	486, 657, 798, 849
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	582, 695
FokI	GGATG	5 cut(s)	201, 309, 370, 396, 780
Fsp4HI	GCNGC	2 cut(s)	582, 695
GluI	GCNGC	2 cut(s)	582, 695
GsuI	CTGGAG	2 cut(s)	597, 840
HaeIII	GGCC	2 cut(s)	820, 903
HapII	CCGG	2 cut(s)	218, 280
Hin1II	CATG	4 cut(s)	490, 661, 802, 853
HinfI	GANTC	4 cut(s)	4, 210, 438, 790
HpaII	CCGG	2 cut(s)	218, 280
HphI	GGTGA	2 cut(s)	19, 491
Hpy166II	GTNNAC	2 cut(s)	327, 389
Hpy188I	TCNGA	3 cut(s)	523, 567, 723
Hpy188III	TCNNGA	6 cut(s)	8, 355, 499, 553, 658, 945
Hpy8I	GTNNAC	2 cut(s)	327, 389
HpyAV	CCTTC	2 cut(s)	269, 903
HpyCH4III	ACNGT	4 cut(s)	599, 613, 664, 719
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	5 cut(s)	177, 446, 673, 886, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 581
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	707
Hsp92II	CATG	4 cut(s)	490, 661, 802, 853
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	362, 427
LmnI	GCTCC	2 cut(s)	578, 859
Lsp1109I	GCAGC	2 cut(s)	593, 681
LweI	GCATC	2 cut(s)	433, 895
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	2 cut(s)	60, 479
MalI	GATC	2 cut(s)	364, 429
MboI	GATC	2 cut(s)	362, 427
MboII	GAAGA	4 cut(s)	137, 514, 541, 881
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	5 cut(s)	23, 49, 375, 667, 725
MluNI	TGGCCA	1 cut(s)	820
MnlI	CCTC	3 cut(s)	477, 695, 914
Mox20I	TGGCCA	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	3 cut(s)	48, 156, 914
MslI	CAYNNNNRTG	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	2 cut(s)	218, 280
MspR9I	CCNGG	2 cut(s)	219, 280
MwoI	GCNNNNNNNGC	2 cut(s)	284, 581
NciI	CCSGG	2 cut(s)	219, 280
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	362, 427
NlaIII	CATG	4 cut(s)	490, 661, 802, 853
NlaIV	GGNNCC	1 cut(s)	855
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	1 cut(s)	802
PagI	TCATGA	1 cut(s)	657
PciI	ACATGT	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	4, 210, 438, 790
PkrI	GCNGC	2 cut(s)	583, 696
PscI	ACATGT	1 cut(s)	798
PshBI	ATTAAT	1 cut(s)	914
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	609
PvuII	CAGCTG	1 cut(s)	584
RseI	CAYNNNNRTG	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	48, 156, 914
SatI	GCNGC	2 cut(s)	582, 695
Sau3AI	GATC	2 cut(s)	362, 427
Sau96I	GGNCC	1 cut(s)	609
ScrFI	CCNGG	2 cut(s)	219, 280
SetI	ASST	7 cut(s)	35, 199, 586, 687, 710, 743, 840
SfaNI	GCATC	2 cut(s)	433, 895
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	23, 49, 375, 667, 725
SspI	AATATT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	217, 278
TaaI	ACNGT	4 cut(s)	599, 613, 664, 719
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	2 cut(s)	441, 498
TasI	AATT	5 cut(s)	23, 49, 375, 667, 725
TfiI	GAWTC	4 cut(s)	4, 210, 438, 790
Tru1I	TTAA	3 cut(s)	48, 156, 914
Tru9I	TTAA	3 cut(s)	48, 156, 914
TscAI	CASTG	4 cut(s)	329, 418, 791, 864
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	2 cut(s)	581, 694
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	5 cut(s)	17, 138, 533, 646, 742
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	4 cut(s)	329, 418, 791, 864
VpaK11BI	GGWCC	1 cut(s)	609
VspI	ATTAAT	1 cut(s)	914
XapI	RAATTY	3 cut(s)	23, 667, 725
XceI	RCATGY	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.