Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005961

Physical Location & Seq

Genomic Coordinates Forward (+)

77144672 .. 77147604

Gene Structure 2933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021672

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTTGGAGCGTTGCTAATGATATGTAAATATGAAGATTTGGAATATTTGAAATCTCGCCAAGGAGAAACTCAGCGCGACGTAGATAAGGATTTCTGTGGTGATGAAGCATGGAGACCATGCTTGAAAGTAATTCACCCTTTATGGTTGTTGGCTTACCGAGTGACTGCATTCTTTCTGCGTTTGGCAATACTGGTTGCTAAAGTTGTCGTCAGTGGTGGTGGCATATATTACTACTATACTCAGTGGACTTTTACCTTGCTTACCATTTATTTTGCGCTTGGATCTCTTCTATCCATTTATGGTAGTTTCTTGTATAACAAAACGAGAAGAATGGAGAGTGGAACATACGTGCTCCTTGAACATGAGGAAAACGGCTTAAATAACCAAGAGGAAAATTATGTTCTCCCACTAGCAGTCAAATGCAGTTATGTCTTTCAAGCTATATTCCAGATGAATGCTGGAGCAGTGATGCTTACCGATTGCATTTACTGGTTCATAATCTTTCCATTCCTCACCATCAACTACAATCTGAGTTTGTTGACGGTGACCATGCACTCGGTCAACGCTGTTTTACTCCTTGGGGATGCAATGTTAAATTGCTTGCAAGTTCCCTTTGTTCGGATATCTTTGTTTGTTTTATGGACTGGTGCTTTTGTCATTTTCCAGTGGATCATTCATGCTTGTGTATCAATATGGTGGCCATACCCATTCCTTGACTTGTCATCACCATATGCCCCAGTTTGGTACTTGATGGTGGGATTGATGCATATCCCATGCTATGCTTTATTTGCACTAATCGTTGGGTCAAAACGTCACCTATTGTCAAAATGGTTTCCTCTGTCATGTCAACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.98

Weight (kDa)

7.54

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27770 AT3G27770
fragaria_vesca	FvH4_6g51020 FvH4_6g51020 FvH4_6g51020 FvH4_6g51020
malus_domestica	MD09G1029400.v1.1
prunus_persica	Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1
pyrus_communis	pycom111g02340
rosa_chinensis	RchiOBHm_Chr2g0172561
rosa_laevigata	RLG00000016015 RLG00000021672 RLG00000022116
rosa_multiflora	Rmu_sc0000912.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079760
rosa_rugosa	Rorug02G0559900.1 Rorug02G0560000
rosa_samantha	Rh2AG636000 Rh2BG649400 Rh2CG616200 Rh2DG663800 Rh3AG202400
rosa_wichuraiana	Rw2G052620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AclI	AACGTT	1 cut(s)	853
AclWI	GGATC	2 cut(s)	292, 680
AcoI	YGGCCR	1 cut(s)	701
AfaI	GTAC	1 cut(s)	749
AfiI	CCNNNNNNNGG	2 cut(s)	621, 744
AgsI	TTSAA	4 cut(s)	52, 127, 362, 440
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	292, 680
AoxI	GGCC	1 cut(s)	701
AspLEI	GCGC	2 cut(s)	78, 280
AsuHPI	GGTGA	6 cut(s)	113, 128, 508, 559, 720, 809
BalI	TGGCCA	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	2 cut(s)	527, 748
BceAI	ACGGC	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	413
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	3 cut(s)	462, 577, 756
BmuI	ACTGGG	1 cut(s)	734
BpmI	CTGGAG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	770
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	61, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	621, 744
Bse1I	ACTGG	5 cut(s)	198, 497, 652, 667, 740
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	770
BseDI	CCNNGG	2 cut(s)	61, 580
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	770
BseLI	CCNNNNNNNGG	2 cut(s)	621, 744
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	3 cut(s)	86, 257, 524
BseNI	ACTGG	5 cut(s)	198, 497, 652, 667, 740
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	621, 744
BsmAI	GTCTC	1 cut(s)	109
BsmI	GAATGC	2 cut(s)	170, 463
BsnI	GGCC	1 cut(s)	703
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	284, 672
BspANI	GGCC	1 cut(s)	703
BspCNI	CTCAG	3 cut(s)	85, 256, 525
BspFNI	CGCG	1 cut(s)	78
BspPI	GGATC	2 cut(s)	292, 680
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	597
BsrI	ACTGG	5 cut(s)	198, 497, 652, 667, 740
BssECI	CCNNGG	2 cut(s)	61, 580
BssMI	GATC	2 cut(s)	284, 672
BssT1I	CCWWGG	2 cut(s)	61, 580
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	3 cut(s)	72, 243, 533
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	78, 280
BstKTI	GATC	2 cut(s)	287, 675
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	2 cut(s)	284, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	791
BstPI	GGTNACC	1 cut(s)	547
BstUI	CGCG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	592
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	4 cut(s)	220, 251, 474, 674
Cac8I	GCNNGC	1 cut(s)	605
CfoI	GCGC	2 cut(s)	78, 280
Csp6I	GTAC	1 cut(s)	748
CviAII	CATG	7 cut(s)	111, 120, 365, 553, 680, 777, 846
CviJI	RGCY	4 cut(s)	155, 378, 443, 703
CviKI_1	RGCY	4 cut(s)	155, 378, 443, 703
CviQI	GTAC	1 cut(s)	748
DdeI	CTNAG	3 cut(s)	72, 243, 533
DpnI	GATC	2 cut(s)	286, 674
DpnII	GATC	2 cut(s)	284, 672
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	61, 580
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	627
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	627
EcoT14I	CCWWGG	2 cut(s)	61, 580
EcoT22I	ATGCAT	1 cut(s)	771
ErhI	CCWWGG	2 cut(s)	61, 580
FaeI	CATG	7 cut(s)	114, 123, 368, 556, 683, 780, 849
FatI	CATG	7 cut(s)	110, 119, 364, 552, 679, 776, 845
FauNDI	CATATG	1 cut(s)	733
FokI	GGATG	1 cut(s)	599
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	2 cut(s)	77, 279
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	703
HhaI	GCGC	2 cut(s)	78, 280
Hin1II	CATG	7 cut(s)	114, 123, 368, 556, 683, 780, 849
Hin6I	GCGC	2 cut(s)	76, 278
HinP1I	GCGC	2 cut(s)	76, 278
HincII	GTYRAC	3 cut(s)	543, 565, 851
HindII	GTYRAC	3 cut(s)	543, 565, 851
HphI	GGTGA	6 cut(s)	113, 128, 508, 559, 720, 809
Hpy166II	GTNNAC	4 cut(s)	249, 543, 565, 851
Hpy188I	TCNGA	2 cut(s)	534, 624
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	4 cut(s)	249, 543, 565, 851
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	4 cut(s)	81, 351, 814, 853
HpyCH4V	TGCA	8 cut(s)	170, 426, 486, 556, 590, 607, 769, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	791
HpyF3I	CTNAG	3 cut(s)	72, 243, 533
HpySE526I	ACGT	4 cut(s)	81, 351, 814, 853
Hsp92II	CATG	7 cut(s)	114, 123, 368, 556, 683, 780, 849
HspAI	GCGC	2 cut(s)	76, 278
Kzo9I	GATC	2 cut(s)	284, 672
LmnI	GCTCC	3 cut(s)	8, 360, 464
LpnPI	CCDG	7 cut(s)	179, 447, 464, 478, 633, 680, 753
LweI	GCATC	3 cut(s)	462, 577, 756
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	4 cut(s)	81, 351, 814, 853
MaeIII	GTNAC	3 cut(s)	163, 547, 815
MalI	GATC	2 cut(s)	286, 674
MboI	GATC	2 cut(s)	284, 672
MboII	GAAGA	3 cut(s)	47, 281, 342
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	703
MluCI	AATT	3 cut(s)	132, 397, 598
MluNI	TGGCCA	1 cut(s)	703
MnlI	CCTC	4 cut(s)	361, 385, 524, 849
Mox20I	TGGCCA	1 cut(s)	703
Mph1103I	ATGCAT	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	703
MseI	TTAA	3 cut(s)	380, 596, 856
MslI	CAYNNNNRTG	1 cut(s)	684
Msp20I	TGGCCA	1 cut(s)	703
Mva1269I	GAATGC	2 cut(s)	170, 463
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	791
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	2 cut(s)	284, 672
NlaIII	CATG	7 cut(s)	114, 123, 368, 556, 683, 780, 849
NmuCI	GTSAC	3 cut(s)	163, 547, 815
NsiI	ATGCAT	1 cut(s)	771
PctI	GAATGC	2 cut(s)	170, 463
Ppu21I	YACGTR	1 cut(s)	352
Psp1406I	AACGTT	1 cut(s)	853
PspEI	GGTNACC	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	749
RsaNI	GTAC	1 cut(s)	748
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	380, 596, 856
Sau3AI	GATC	2 cut(s)	284, 672
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	7 cut(s)	84, 260, 354, 445, 817, 822, 856
SfaNI	GCATC	3 cut(s)	462, 577, 756
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	3 cut(s)	132, 397, 598
SspI	AATATT	1 cut(s)	47
SspMI	CTAG	1 cut(s)	413
StyI	CCWWGG	2 cut(s)	61, 580
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	4 cut(s)	84, 354, 817, 856
TaqII	GACCGA	1 cut(s)	550
TasI	AATT	3 cut(s)	132, 397, 598
Tru1I	TTAA	3 cut(s)	380, 596, 856
Tru9I	TTAA	3 cut(s)	380, 596, 856
TscAI	CASTG	4 cut(s)	220, 251, 474, 674
TseFI	GTSAC	3 cut(s)	163, 547, 815
Tsp45I	GTSAC	3 cut(s)	163, 547, 815
TspDTI	ATGAA	5 cut(s)	48, 120, 470, 487, 668
TspRI	CASTG	4 cut(s)	220, 251, 474, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.