Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005961

Physical Location & Seq

Genomic Coordinates Forward (+)

86802485 .. 86805987

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG649400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAACTAGAGATTACTGCTGATACTACTGCCCTGAGCTATTGGTTGAACTGGAGAGTCTTGTTGTGTTCAATTTGGGTTTTCACACCTATGGTTGGAGCGTTGCTAATGATATGTAAATATGAAGATTTGGAATATTTGAAATCTCGCCGAGGAGAAACTCAGCGCGACGTAGATAAGGATTTCTGTGGTGATGAAGCATGGAGACCATGCTTGAAAGTAATTCACCCTTTATGGTTGTTGGCTTACCGAGTGACTGCATTCTTTCTGCTTTTGTCAATACTGATTGCTAAAGTTGTCGTCAGTGGTGGTGGCATATATTACTACTATACTCAGTGGACTTTTACCTTGCTTACCATTTATTTTGGGCTTGGATCTCTTCTATCCATTTATGGTAGTTTCTGGTATAACAAAACGAGAAGAATGGGTATGGGTGTTCAACATGTGGGGTCAGATGCAGAGAATGGAACATACGTGCTCCTTGAACATGAGGGAAACGGCTTAAATAACCAAGAGGAAAACTATGTTCTCCCAGTAGCAGTCAAATGCAGTTATGTCTTTCAAGCTATATTCCAGACGAATGCTGGAGCAGTGATGCTTACCGATTGCATTTACTGGTTCATAATCTTTCCATTCCTCACCATCAAAGACTACAATCTGAGTTTGGTATGTACTACAACTCTCAATACATCCTATACCTCCCTTTGCTTGATTGTTTTTCTTGCCATGGGCAAAAACAGATGTGTGCCTCAGTTGTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.11

Weight (kDa)

5.92

Isoelectric Point (pI)

18.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27770 AT3G27770
fragaria_vesca	FvH4_6g51020 FvH4_6g51020 FvH4_6g51020 FvH4_6g51020
malus_domestica	MD09G1029400.v1.1
prunus_persica	Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1
pyrus_communis	pycom111g02340
rosa_chinensis	RchiOBHm_Chr2g0172561
rosa_laevigata	RLG00000016015 RLG00000021672 RLG00000022116
rosa_multiflora	Rmu_sc0000912.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079760
rosa_rugosa	Rorug02G0559900.1 Rorug02G0560000
rosa_samantha	Rh2AG636000 Rh2BG649400 Rh2CG616200 Rh2DG663800 Rh3AG202400
rosa_wichuraiana	Rw2G052620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AclWI	GGATC	1 cut(s)	382
AfaI	GTAC	1 cut(s)	673
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	7 cut(s)	49, 72, 142, 217, 440, 485, 563
AluBI	AGCT	2 cut(s)	39, 566
AluI	AGCT	2 cut(s)	39, 566
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	203, 218, 631
Bbv12I	GWGCWC	1 cut(s)	480
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	8
BmrI	ACTGGG	1 cut(s)	527
BmsI	GCATC	2 cut(s)	445, 585
BmuI	ACTGGG	1 cut(s)	527
BpmI	CTGGAG	2 cut(s)	73, 606
Bpu10I	CCTNAGC	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	151, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	3 cut(s)	56, 533, 620
BseDI	CCNNGG	2 cut(s)	151, 726
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	5 cut(s)	26, 176, 347, 650, 764
BseNI	ACTGG	3 cut(s)	56, 533, 620
BseRI	GAGGAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	199
BsmI	GAATGC	2 cut(s)	260, 586
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	374
Bsp19I	CCATGG	1 cut(s)	726
BspCNI	CTCAG	5 cut(s)	27, 175, 346, 651, 763
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	3 cut(s)	56, 533, 620
BssECI	CCNNGG	2 cut(s)	151, 726
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	726
Bst6I	CTCTTC	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	475
BstDEI	CTNAG	5 cut(s)	35, 162, 333, 659, 750
BstDSI	CCRYGG	1 cut(s)	726
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	377
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	446
BstUI	CGCG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	310, 341, 597
CfoI	GCGC	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	5 cut(s)	201, 210, 443, 488, 727
CviJI	RGCY	5 cut(s)	39, 245, 370, 501, 566
CviKI_1	RGCY	5 cut(s)	39, 245, 370, 501, 566
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	5 cut(s)	35, 162, 333, 659, 750
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	726
Eco31I	GGTCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	726
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	5 cut(s)	204, 213, 446, 491, 730
FatI	CATG	5 cut(s)	200, 209, 442, 487, 726
FokI	GGATG	1 cut(s)	676
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	167
GsuI	CTGGAG	2 cut(s)	73, 606
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	204, 213, 446, 491, 730
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	3 cut(s)	203, 218, 631
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	2 cut(s)	454, 660
Hpy188III	TCNNGA	1 cut(s)	574
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4IV	ACGT	2 cut(s)	171, 474
HpyCH4V	TGCA	4 cut(s)	260, 458, 549, 609
HpyF3I	CTNAG	5 cut(s)	35, 162, 333, 659, 750
HpySE526I	ACGT	2 cut(s)	171, 474
Hsp92II	CATG	5 cut(s)	204, 213, 446, 491, 730
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	374
LmnI	GCTCC	3 cut(s)	98, 483, 587
LpnPI	CCDG	7 cut(s)	37, 47, 388, 546, 570, 587, 601
LweI	GCATC	2 cut(s)	445, 585
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	2 cut(s)	171, 474
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	3 cut(s)	137, 371, 432
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	2 cut(s)	72, 222
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	146, 484, 508, 647, 709, 759
MseI	TTAA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	89
Mva1269I	GAATGC	2 cut(s)	260, 586
MvnI	CGCG	1 cut(s)	168
NcoI	CCATGG	1 cut(s)	726
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	5 cut(s)	204, 213, 446, 491, 730
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	446
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	2 cut(s)	260, 586
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	475
PscI	ACATGT	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	503
Sau3AI	GATC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	7 cut(s)	41, 91, 174, 350, 477, 568, 701
SfaNI	GCATC	2 cut(s)	445, 585
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	72, 222
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	726
TaiI	ACGT	2 cut(s)	174, 477
TasI	AATT	2 cut(s)	72, 222
TatI	WGTACW	1 cut(s)	671
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	3 cut(s)	310, 341, 597
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	3 cut(s)	138, 210, 610
TspRI	CASTG	3 cut(s)	310, 341, 597
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.