Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005961

Physical Location & Seq

Genomic Coordinates Forward (+)

25951813 .. 25954888

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G288000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCAGCTAGAGGTTACGGCTGATACTACTAACCTGAGCTATTGGTTGAACTGGAGAGTCTTGCTATGTGCAATTTGGTTATTCACACCGATTGTTATAGCATTATTAATGATATGGAAATATGATGCTTCAGGCCATTTGAAATCTGACAGGAGAGAAACTCAGCAGGATGCAGATCAGGATTTATGCGGTGATAAAGCGTGGAAACCGTGCCTCAAAGAAATTGACCCAATTTGGTTGCTGATTTATCGAGTAACTGCATTCTCTCTGCTTTTGGCAACACTGATTGCCAGAGTTGTTATCAGTGGAGGTGGCATATTTTACTACTATACTCAGTGGACTTTTACCTTGCTCACCATTTATTTTGGGTGTGGATCTCTTCTTTCCATTTATGGATGTTGGCGGTGCAATAAAATCAGCAGCATGGGTACTTCAGGCGATTATCATGTTGGGACAGATGCAGAGGATGGAGCGTACATTCCCCTTGAATACCAAGAGAAAGACTCAAATCCTGAAGAGGAAAGTTGTCTTCACCTAGCAGCAGCCAAATGCAGTTATGTCTTCGAAGCTATGTTCCAGATGAATGCTGGGGCAGTGATGCTTACTGATTGCATTTATTGGATCGTTATATTTCCGTTTCTCACCATCAAAGATTACAATCTGAATTTTATGACCGTGAACATGCACACAATCAATGCTGTTTTACTCCTTGGCGACGCAATGTTGAATTGCTTGCGACTCCCGTTTGTTCGGATATCTTTGTTCATTTTATGGACGGGTGCTTTTGTCATTTTCCAGTGGACCATTCATGCTTTTGTATCATTATGGTGGCCATACCCATTTCTTGACTTATCATCACCATATGCCCCGTTGTGGTACTTACTGATGGCATTGACTCATATCCCATGCTACGCTATCTTTGCTCTAATTGTGGGATTAAAACATCACCTCTTGTCAAAATGGTTTCCCCAGTCTTACCAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.78

Weight (kDa)

5.55

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27770 AT3G27770
fragaria_vesca	FvH4_6g51020 FvH4_6g51020 FvH4_6g51020 FvH4_6g51020
malus_domestica	MD09G1029400.v1.1
prunus_persica	Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1
pyrus_communis	pycom111g02340
rosa_chinensis	RchiOBHm_Chr2g0172561
rosa_laevigata	RLG00000016015 RLG00000021672 RLG00000022116
rosa_multiflora	Rmu_sc0000912.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079760
rosa_rugosa	Rorug02G0559900.1 Rorug02G0560000
rosa_samantha	Rh2AG636000 Rh2BG649400 Rh2CG616200 Rh2DG663800 Rh3AG202400
rosa_wichuraiana	Rw2G052620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	189, 403
AclWI	GGATC	2 cut(s)	382, 629
AcoI	YGGCCR	1 cut(s)	830
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	3 cut(s)	114, 417, 534
AfaI	GTAC	3 cut(s)	430, 476, 878
AfiI	CCNNNNNNNGG	1 cut(s)	873
AgsI	TTSAA	4 cut(s)	49, 142, 488, 727
AluBI	AGCT	3 cut(s)	7, 39, 569
AluI	AGCT	3 cut(s)	7, 39, 569
AlwI	GGATC	2 cut(s)	382, 629
AoxI	GGCC	2 cut(s)	133, 830
ApeKI	GCWGC	4 cut(s)	4, 420, 539, 542
ApoI	RAATTY	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	801
AsuHPI	GGTGA	6 cut(s)	203, 346, 524, 634, 849, 938
AsuII	TTCGAA	1 cut(s)	564
AvaII	GGWCC	1 cut(s)	801
BalI	TGGCCA	1 cut(s)	832
BbsI	GAAGAC	2 cut(s)	521, 553
BbvI	GCAGC	4 cut(s)	16, 432, 551, 554
BccI	CCATC	3 cut(s)	461, 653, 880
BceAI	ACGGC	1 cut(s)	33
BfaI	CTAG	3 cut(s)	8, 536, 985
BisI	GCNGC	4 cut(s)	5, 421, 540, 543
BlsI	GCNGC	4 cut(s)	6, 422, 541, 544
Bme18I	GGWCC	1 cut(s)	801
BmgT120I	GGNCC	1 cut(s)	801
BmrI	ACTGGG	1 cut(s)	964
BmsI	GCATC	4 cut(s)	115, 160, 448, 588
BmuI	ACTGGG	1 cut(s)	964
BpiI	GAAGAC	2 cut(s)	521, 553
BplI	GAGNNNNNCTC	4 cut(s)	145, 177, 488, 520
BpmI	CTGGAG	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	174, 657
BsaJI	CCNNGG	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	1 cut(s)	873
Bse1I	ACTGG	4 cut(s)	56, 796, 970, 979
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	2 cut(s)	174, 657
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	3 cut(s)	175, 401, 472
BseJI	GATNNNNATC	2 cut(s)	174, 657
BseLI	CCNNNNNNNGG	1 cut(s)	873
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	3 cut(s)	26, 176, 347
BseNI	ACTGG	4 cut(s)	56, 796, 970, 979
BseXI	GCAGC	4 cut(s)	16, 432, 551, 554
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	2 cut(s)	135, 832
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	873
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	2 cut(s)	260, 589
BsnI	GGCC	2 cut(s)	135, 832
Bsp119I	TTCGAA	1 cut(s)	564
Bsp143I	GATC	3 cut(s)	175, 374, 621
BspACI	CCGC	2 cut(s)	189, 403
BspANI	GGCC	2 cut(s)	135, 832
BspCNI	CTCAG	3 cut(s)	27, 175, 346
BspPI	GGATC	2 cut(s)	382, 629
BspT104I	TTCGAA	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	4 cut(s)	56, 796, 970, 979
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	3 cut(s)	175, 374, 621
BssT1I	CCWWGG	1 cut(s)	709
Bst4CI	ACNGT	2 cut(s)	210, 676
Bst6I	CTCTTC	2 cut(s)	384, 510
BstBI	TTCGAA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	3 cut(s)	35, 162, 333
BstF5I	GGATG	3 cut(s)	175, 401, 472
BstKTI	GATC	3 cut(s)	178, 377, 624
BstMBI	GATC	3 cut(s)	175, 374, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	920
BstNSI	RCATGY	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	16, 432, 551, 554
BstV2I	GAAGAC	2 cut(s)	521, 553
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	2 cut(s)	135, 832
BtsCI	GGATG	3 cut(s)	175, 401, 472
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	6 cut(s)	281, 310, 341, 600, 803, 986
Cac8I	GCNNGC	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	801
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	429, 475, 877
CviAII	CATG	5 cut(s)	424, 446, 682, 809, 906
CviJI	RGCY	7 cut(s)	7, 20, 39, 135, 545, 569, 832
CviKI_1	RGCY	7 cut(s)	7, 20, 39, 135, 545, 569, 832
CviQI	GTAC	3 cut(s)	429, 475, 877
DdeI	CTNAG	3 cut(s)	35, 162, 333
DpnI	GATC	3 cut(s)	177, 376, 623
DpnII	GATC	3 cut(s)	175, 374, 621
EaeI	YGGCCR	1 cut(s)	830
Eam1104I	CTCTTC	2 cut(s)	384, 510
EarI	CTCTTC	2 cut(s)	384, 510
Eco130I	CCWWGG	1 cut(s)	709
Eco32I	GATATC	1 cut(s)	756
Eco47I	GGWCC	1 cut(s)	801
Eco57I	CTGAAG	3 cut(s)	114, 417, 534
EcoRV	GATATC	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	5 cut(s)	427, 449, 685, 812, 909
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	5 cut(s)	423, 445, 681, 808, 905
FauNDI	CATATG	1 cut(s)	862
Fnu4HI	GCNGC	4 cut(s)	5, 421, 540, 543
FokI	GGATG	3 cut(s)	182, 408, 479
Fsp4HI	GCNGC	4 cut(s)	5, 421, 540, 543
FspBI	CTAG	3 cut(s)	8, 536, 985
GluI	GCNGC	4 cut(s)	5, 421, 540, 543
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	135, 832
HgaI	GACGC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	427, 449, 685, 812, 909
HinfI	GANTC	4 cut(s)	57, 503, 738, 895
HphI	GGTGA	6 cut(s)	203, 346, 524, 634, 849, 938
Hpy166II	GTNNAC	3 cut(s)	339, 679, 801
Hpy188I	TCNGA	3 cut(s)	148, 663, 753
Hpy188III	TCNNGA	4 cut(s)	179, 512, 577, 845
Hpy8I	GTNNAC	3 cut(s)	339, 679, 801
Hpy99I	CGWCG	1 cut(s)	719
HpyCH4III	ACNGT	2 cut(s)	210, 676
HpyCH4V	TGCA	9 cut(s)	4, 71, 173, 260, 408, 461, 552, 612, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	920
HpyF3I	CTNAG	3 cut(s)	35, 162, 333
Hsp92II	CATG	5 cut(s)	427, 449, 685, 812, 909
Kzo9I	GATC	3 cut(s)	175, 374, 621
LmnI	GCTCC	1 cut(s)	470
Lsp1109I	GCAGC	4 cut(s)	16, 432, 551, 554
LweI	GCATC	4 cut(s)	115, 160, 448, 588
MaeI	CTAG	3 cut(s)	8, 536, 985
MaeIII	GTNAC	2 cut(s)	13, 253
MalI	GATC	3 cut(s)	177, 376, 623
MboI	GATC	3 cut(s)	175, 374, 621
MboII	GAAGA	4 cut(s)	371, 521, 527, 553
MflI	RGATCY	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	832
MluCI	AATT	6 cut(s)	72, 222, 231, 664, 727, 927
MluNI	TGGCCA	1 cut(s)	832
MlyI	GAGTC	4 cut(s)	66, 497, 732, 889
MnlI	CCTC	6 cut(s)	4, 224, 302, 457, 511, 959
Mox20I	TGGCCA	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	832
MseI	TTAA	2 cut(s)	107, 938
MslI	CAYNNNNRTG	1 cut(s)	826
Msp20I	TGGCCA	1 cut(s)	832
Mva1269I	GAATGC	2 cut(s)	260, 589
MwoI	GCNNNNNNNGC	1 cut(s)	920
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	3 cut(s)	175, 374, 621
NlaIII	CATG	5 cut(s)	427, 449, 685, 812, 909
NspI	RCATGY	1 cut(s)	685
NspV	TTCGAA	1 cut(s)	564
PctI	GAATGC	2 cut(s)	260, 589
PkrI	GCNGC	4 cut(s)	6, 422, 541, 544
PleI	GAGTC	4 cut(s)	65, 497, 732, 889
PpsI	GAGTC	4 cut(s)	65, 497, 732, 889
PshBI	ATTAAT	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	587
PspPI	GGNCC	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	3 cut(s)	430, 476, 878
RsaNI	GTAC	3 cut(s)	429, 475, 877
RseI	CAYNNNNRTG	1 cut(s)	826
SaqAI	TTAA	2 cut(s)	107, 938
SatI	GCNGC	4 cut(s)	5, 421, 540, 543
Sau3AI	GATC	3 cut(s)	175, 374, 621
Sau96I	GGNCC	1 cut(s)	801
SchI	GAGTC	4 cut(s)	66, 497, 732, 889
SetI	ASST	9 cut(s)	9, 15, 36, 41, 313, 350, 537, 571, 951
SfaNI	GCATC	4 cut(s)	115, 160, 448, 588
SfuI	TTCGAA	1 cut(s)	564
SinI	GGWCC	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	826
Sse9I	AATT	6 cut(s)	72, 222, 231, 664, 727, 927
SsiI	CCGC	2 cut(s)	189, 403
SspMI	CTAG	3 cut(s)	8, 536, 985
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	2 cut(s)	210, 676
TaqI	TCGA	2 cut(s)	250, 564
TasI	AATT	6 cut(s)	72, 222, 231, 664, 727, 927
Tru1I	TTAA	2 cut(s)	107, 938
Tru9I	TTAA	2 cut(s)	107, 938
TscAI	CASTG	6 cut(s)	288, 310, 341, 600, 803, 986
TseI	GCWGC	4 cut(s)	4, 420, 539, 542
TspDTI	ATGAA	3 cut(s)	596, 754, 797
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	6 cut(s)	288, 310, 341, 600, 803, 986
VpaK11BI	GGWCC	1 cut(s)	801
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	1 cut(s)	664
XceI	RCATGY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	584
XspI	CTAG	3 cut(s)	8, 536, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.