FvH4_6g51020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005961
Physical Location & Seq
Forward (+)
37887351 .. 37890620
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51020.t1

Sequence Viewer

Length: 987 bp
ATGGAAATAGGGAGTGTTACTGCTGATACTACTGACCTGAGCTATTGGTTGAACTGGAGAGTGTTGCTGTGTTCAGTTTGGGTTTTCACACCTATGGTTGCAGCTTTGCTACTGTTATGTAAATATGAGGATTCGGATTATTTGAAGTTTCGCCGAGGTGAAACTCGGCAGGACAGGAGTAAGGACTTCTGTGGTGATGAAGCATGGAGACCGTGCCTGAAAATTGTTCATCCTTTATGGTTGTTGGCTTACAGAGTGATTGCATTCTTTCTGCTTTTGGTGATACTGATTGCCAAAGTTGTTGTCAGTGGTGGCGGCATATATTTCTACTATACTCAGTGGACTTTTACCTTGCTTACCATTTATTTTGGGTTTGGATCTCTTCTATCCATTTATGGTAGTTTCTGGTGTAACAAAACGAGAGCAATGGGTTCTGATGTTCATCATGTGGGGTCAGATGCAGAGAATGGAACATACATTCTCCTTGAACATGAGGGAAATGGCTTAAATAACCGAGAAGAAATCTATTTTCTCCCAGTAGCAGTCAAATGCAGTTATGTCTTTCAAGCTATATTCCAGACGAACGCTGGAGCAGTGATGCTTACTGATTGCATTTACTGGCTTGTAATCTTTCCATTTCTCACCCTGAAAGACTACAACATGAGTCTTTTGACGGTGAGCATGCACACAGTCAATGCTGTTTTACTCCTTGGGGATGCAATGTTAAATTGCTTGCAAGTCCCCTTTGTTCGGATATCATTGTTTGTTTTGTGGACTGGTGCATTCGTCATTTTCCAGTGGATCGTTCATGCTTGTGTATCAATATGGTGGCCGTACCCATTCCTTGACTTGTCCTCGGCATATGCCCCAGTTTGGTACTTAATGGTGGGATTGATGCATATCCCATGCTATGCTTTTTTCGCACTAATCGTTGGGTCAAAACGTCACCTATTGTCAAAATGGTTTCCTGAGTCATGTCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.7

Weight (kDa)

6.43

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 315
AclWI GGATC 2 cut(s) 385, 809
AcoI YGGCCR 1 cut(s) 830
AfaI GTAC 2 cut(s) 836, 878
AfiI CCNNNNNNNGG 2 cut(s) 750, 873
AgsI TTSAA 4 cut(s) 52, 145, 488, 566
AluBI AGCT 3 cut(s) 42, 104, 569
AluI AGCT 3 cut(s) 42, 104, 569
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 385, 809
AoxI GGCC 1 cut(s) 830
ApeKI GCWGC 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AsuHPI GGTGA 6 cut(s) 170, 206, 292, 634, 688, 938
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 817
BcoDI GTCTC 1 cut(s) 202
BisI GCNGC 2 cut(s) 102, 316
BlsI GCNGC 2 cut(s) 103, 317
BmrI ACTGGG 2 cut(s) 530, 863
BmsI GCATC 4 cut(s) 448, 588, 706, 885
BmuI ACTGGG 2 cut(s) 530, 863
BpmI CTGGAG 2 cut(s) 76, 609
Bpu10I CCTNAGC 1 cut(s) 38
BsaBI GATNNNNATC 2 cut(s) 441, 899
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 154, 709, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 750, 873
Bse1I ACTGG 6 cut(s) 59, 536, 623, 781, 796, 869
Bse3DI GCAATG 2 cut(s) 432, 726
Bse8I GATNNNNATC 2 cut(s) 441, 899
BseDI CCNNGG 3 cut(s) 154, 709, 855
BseGI GGATG 2 cut(s) 229, 721
BseJI GATNNNNATC 2 cut(s) 441, 899
BseLI CCNNNNNNNGG 2 cut(s) 750, 873
BseMI GCAATG 2 cut(s) 432, 726
BseMII CTCAG 3 cut(s) 29, 350, 960
BseNI ACTGG 6 cut(s) 59, 536, 623, 781, 796, 869
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 832
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 2 cut(s) 750, 873
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 725
BsmI GAATGC 2 cut(s) 263, 782
BsnI GGCC 1 cut(s) 832
Bso31I GGTCTC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 377, 801
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 832
BspCNI CTCAG 3 cut(s) 30, 349, 961
BspPI GGATC 2 cut(s) 385, 809
BspTNI GGTCTC 1 cut(s) 202
BsrDI GCAATG 2 cut(s) 432, 726
BsrI ACTGG 6 cut(s) 59, 536, 623, 781, 796, 869
BssECI CCNNGG 3 cut(s) 154, 709, 855
BssMI GATC 2 cut(s) 377, 801
BssT1I CCWWGG 1 cut(s) 709
Bst4CI ACNGT 4 cut(s) 114, 213, 676, 691
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 683, 734
BstDEI CTNAG 3 cut(s) 38, 336, 969
BstF5I GGATG 2 cut(s) 229, 721
BstKTI GATC 2 cut(s) 380, 804
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 2 cut(s) 377, 801
BstMWI GCNNNNNNNGC 1 cut(s) 920
BstNSI RCATGY 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 1 cut(s) 832
BtsCI GGATG 2 cut(s) 229, 721
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 5 cut(s) 313, 344, 600, 803, 986
Cac8I GCNNGC 2 cut(s) 683, 734
Csp6I GTAC 2 cut(s) 835, 877
CviAII CATG 8 cut(s) 204, 446, 491, 661, 682, 809, 906, 975
CviJI RGCY 7 cut(s) 42, 104, 248, 504, 569, 622, 832
CviKI_1 RGCY 7 cut(s) 42, 104, 248, 504, 569, 622, 832
CviQI GTAC 2 cut(s) 835, 877
DdeI CTNAG 3 cut(s) 38, 336, 969
DpnI GATC 2 cut(s) 379, 803
DpnII GATC 2 cut(s) 377, 801
EaeI YGGCCR 1 cut(s) 830
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 709
Eco31I GGTCTC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 756
EcoRV GATATC 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 709
EcoT22I ATGCAT 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 8 cut(s) 207, 449, 494, 664, 685, 812, 909, 978
FaqI GGGAC 1 cut(s) 725
FatI CATG 8 cut(s) 203, 445, 490, 660, 681, 808, 905, 974
FauNDI CATATG 1 cut(s) 862
Fnu4HI GCNGC 2 cut(s) 102, 316
FokI GGATG 2 cut(s) 216, 728
Fsp4HI GCNGC 2 cut(s) 102, 316
GluI GCNGC 2 cut(s) 102, 316
GsuI CTGGAG 2 cut(s) 76, 609
HaeIII GGCC 1 cut(s) 832
Hin1II CATG 8 cut(s) 207, 449, 494, 664, 685, 812, 909, 978
HinfI GANTC 3 cut(s) 131, 664, 971
HphI GGTGA 6 cut(s) 170, 206, 292, 634, 688, 938
Hpy166II GTNNAC 2 cut(s) 342, 774
Hpy188I TCNGA 4 cut(s) 136, 436, 457, 753
Hpy188III TCNNGA 2 cut(s) 577, 968
Hpy8I GTNNAC 2 cut(s) 342, 774
HpyCH4III ACNGT 4 cut(s) 114, 213, 676, 691
HpyCH4IV ACGT 1 cut(s) 943
HpyF10VI GCNNNNNNNGC 1 cut(s) 920
HpyF3I CTNAG 3 cut(s) 38, 336, 969
HpySE526I ACGT 1 cut(s) 943
Hsp92II CATG 8 cut(s) 207, 449, 494, 664, 685, 812, 909, 978
Kzo9I GATC 2 cut(s) 377, 801
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 4 cut(s) 448, 588, 706, 885
MaeII ACGT 1 cut(s) 943
MaeIII GTNAC 3 cut(s) 16, 410, 944
MalI GATC 2 cut(s) 379, 803
MboI GATC 2 cut(s) 377, 801
MboII GAAGA 2 cut(s) 374, 530
MflI RGATCY 1 cut(s) 377
MluCI AATT 2 cut(s) 222, 727
MlyI GAGTC 2 cut(s) 673, 980
MnlI CCTC 4 cut(s) 121, 149, 487, 865
Mph1103I ATGCAT 1 cut(s) 900
MseI TTAA 3 cut(s) 506, 725, 881
MslI CAYNNNNRTG 3 cut(s) 92, 813, 979
Mva1269I GAATGC 2 cut(s) 263, 782
MwoI GCNNNNNNNGC 1 cut(s) 920
NdeI CATATG 1 cut(s) 862
NdeII GATC 2 cut(s) 377, 801
NlaIII CATG 8 cut(s) 207, 449, 494, 664, 685, 812, 909, 978
NmeAIII GCCGAG 3 cut(s) 145, 179, 836
NmuCI GTSAC 1 cut(s) 944
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 685
PaeI GCATGC 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 927
PctI GAATGC 2 cut(s) 263, 782
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 103, 317
PleI GAGTC 2 cut(s) 672, 979
PpsI GAGTC 2 cut(s) 672, 979
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 2 cut(s) 836, 878
RsaNI GTAC 2 cut(s) 835, 877
RseI CAYNNNNRTG 3 cut(s) 92, 813, 979
SaqAI TTAA 3 cut(s) 506, 725, 881
SatI GCNGC 2 cut(s) 102, 316
Sau3AI GATC 2 cut(s) 377, 801
SchI GAGTC 2 cut(s) 673, 980
SetI ASST 9 cut(s) 39, 44, 94, 106, 160, 353, 571, 946, 951
SfaNI GCATC 4 cut(s) 448, 588, 706, 885
SmiMI CAYNNNNRTG 3 cut(s) 92, 813, 979
SphI GCATGC 1 cut(s) 685
Sse9I AATT 2 cut(s) 222, 727
SsiI CCGC 1 cut(s) 315
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 4 cut(s) 114, 213, 676, 691
TaiI ACGT 1 cut(s) 946
TasI AATT 2 cut(s) 222, 727
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 3 cut(s) 506, 725, 881
Tru9I TTAA 3 cut(s) 506, 725, 881
TscAI CASTG 5 cut(s) 313, 344, 600, 803, 986
TseFI GTSAC 1 cut(s) 944
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 944
TspDTI ATGAA 4 cut(s) 213, 218, 431, 797
TspRI CASTG 5 cut(s) 313, 344, 600, 803, 986
XceI RCATGY 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.