Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005961

Physical Location & Seq

Genomic Coordinates Forward (+)

86109693 .. 86114677

Gene Structure 4985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG636000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAACTAGAGATTACTGCTGATACTACTGCCCTGAGCTATTGGTTGAACTGGAGAGTCTTGTTGTGTTCAATTTGGGTTTTCACACCTATGGTTGGAGCGTTGCTAATGATATGTAAATATGAAGATTTGGAATATTTGAAATCTCGCCGAGGAGAAACTCAGCGCGACGTAGATAAGGATTTCTGTGGTGATGAAGCATGGAGACCATGCTTGAAAGTAATTCACCCTTTATGGTTGTTGGCTTACCGAGTGACTGCATTCTTTCTGCTTTTGTCAATACTGATTGCTAAAGTTGTCGTCAGTGGTGGTGGCATATATTACTACTATACTCAGTGGACTTTTACCTTGCTTACCATTTATTTTGGGCTTGGATCTCTTCTATCCATTTATGGTAGTTTCTGGTATAACAAAACGAGAAGAATGGGTATGGGTGTTCAACATGTGGGGTCAGATGCAGAGAATGGAACATACGTGCTCCTTGAACATGAGGGAAACGGCTTAAATAACCAAGAGGAAAACTATGTTCTCCCAGTAGCAGTCAAATGCAGTTATGTCTTTCAAGCTATATTCCAGACGAATGCTGGAGCAGTGATGCTTACCGATTGCATTTACTGGTTCATAATCTTTCCATTCCTCACCATCAAAGACTACAATCTGAGTTTGTTGACGGTGACCATGCACTCGGTCAATGCTGTTTTACTCCTTGGGGATGCAATGTTAAATTGCTTGCAAGTTCCCTTTGTTCGGATATCTTTGTTTGTTTTATGGACTGGTGCTTTCGTCATTTTCCAGTGGATCATTCATGCTTGTGTATCAATATGGTGGCCATACCCATTCCTTGACTTGTCATCACCATATGCCCCAGTTTGGTACGTTTTCTCAACTCTTTTTATGACCTCTCCTCATTGTTGGTACATCAGATTTATGGTAAAATACCATTCTTTTACTGAAGAATATGACCTTCTATCTGAAAACGGTCAGGCGGGTTTAAACTCGTTAAGGGTTAAAATGATATCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

39.49

Weight (kDa)

5.97

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27770 AT3G27770
fragaria_vesca	FvH4_6g51020 FvH4_6g51020 FvH4_6g51020 FvH4_6g51020
malus_domestica	MD09G1029400.v1.1
prunus_persica	Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1
pyrus_communis	pycom111g02340
rosa_chinensis	RchiOBHm_Chr2g0172561
rosa_laevigata	RLG00000016015 RLG00000021672 RLG00000022116
rosa_multiflora	Rmu_sc0000912.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079760
rosa_rugosa	Rorug02G0559900.1 Rorug02G0560000
rosa_samantha	Rh2AG636000 Rh2BG649400 Rh2CG616200 Rh2DG663800 Rh3AG202400
rosa_wichuraiana	Rw2G052620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	986
AclWI	GGATC	2 cut(s)	382, 806
AcoI	YGGCCR	1 cut(s)	827
AcuI	CTGAAG	1 cut(s)	972
AfaI	GTAC	2 cut(s)	875, 917
AfiI	CCNNNNNNNGG	3 cut(s)	95, 747, 870
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	7 cut(s)	49, 72, 142, 217, 440, 485, 563
AluBI	AGCT	2 cut(s)	39, 566
AluI	AGCT	2 cut(s)	39, 566
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	382, 806
AoxI	GGCC	1 cut(s)	827
AspLEI	GCGC	1 cut(s)	168
AsuHPI	GGTGA	5 cut(s)	203, 218, 631, 685, 846
BalI	TGGCCA	1 cut(s)	829
Bbv12I	GWGCWC	1 cut(s)	480
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	8
BmrI	ACTGGG	2 cut(s)	527, 860
BmsI	GCATC	3 cut(s)	445, 585, 703
BmuI	ACTGGG	2 cut(s)	527, 860
BpmI	CTGGAG	2 cut(s)	73, 606
Bpu10I	CCTNAGC	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	151, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 747, 870
Bse1I	ACTGG	6 cut(s)	56, 533, 620, 778, 793, 866
Bse3DI	GCAATG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	151, 706
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	3 cut(s)	95, 747, 870
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	4 cut(s)	26, 176, 347, 650
BseNI	ACTGG	6 cut(s)	56, 533, 620, 778, 793, 866
BseRI	GAGGAG	2 cut(s)	168, 894
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	480
BslI	CCNNNNNNNGG	3 cut(s)	95, 747, 870
BsmAI	GTCTC	1 cut(s)	199
BsmI	GAATGC	2 cut(s)	260, 586
BsnI	GGCC	1 cut(s)	829
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	374, 798
BspACI	CCGC	1 cut(s)	986
BspANI	GGCC	1 cut(s)	829
BspCNI	CTCAG	4 cut(s)	27, 175, 346, 651
BspFNI	CGCG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	382, 806
BspTNI	GGTCTC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	6 cut(s)	56, 533, 620, 778, 793, 866
BssECI	CCNNGG	2 cut(s)	151, 706
BssMI	GATC	2 cut(s)	374, 798
BssT1I	CCWWGG	1 cut(s)	706
Bst4CI	ACNGT	2 cut(s)	673, 980
Bst6I	CTCTTC	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	731
BstDEI	CTNAG	4 cut(s)	35, 162, 333, 659
BstEII	GGTNACC	1 cut(s)	673
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	377, 801
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	374, 798
BstNSI	RCATGY	1 cut(s)	446
BstPI	GGTNACC	1 cut(s)	673
BstUI	CGCG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	829
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	4 cut(s)	310, 341, 597, 800
Cac8I	GCNNGC	1 cut(s)	731
CfoI	GCGC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	874, 916
CviAII	CATG	6 cut(s)	201, 210, 443, 488, 679, 806
CviJI	RGCY	6 cut(s)	39, 245, 370, 501, 566, 829
CviKI_1	RGCY	6 cut(s)	39, 245, 370, 501, 566, 829
CviQI	GTAC	2 cut(s)	874, 916
DdeI	CTNAG	4 cut(s)	35, 162, 333, 659
DpnI	GATC	2 cut(s)	376, 800
DpnII	GATC	2 cut(s)	374, 798
DraI	TTTAAA	1 cut(s)	993
EaeI	YGGCCR	1 cut(s)	827
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	706
Eco31I	GGTCTC	1 cut(s)	199
Eco32I	GATATC	2 cut(s)	753, 1017
Eco57I	CTGAAG	1 cut(s)	972
Eco91I	GGTNACC	1 cut(s)	673
EcoO65I	GGTNACC	1 cut(s)	673
EcoRV	GATATC	2 cut(s)	753, 1017
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	6 cut(s)	204, 213, 446, 491, 682, 809
FatI	CATG	6 cut(s)	200, 209, 442, 487, 678, 805
FauI	CCCGC	1 cut(s)	979
FauNDI	CATATG	1 cut(s)	859
FokI	GGATG	1 cut(s)	725
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	167
GsuI	CTGGAG	2 cut(s)	73, 606
HaeIII	GGCC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	204, 213, 446, 491, 682, 809
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	1 cut(s)	57
HphI	GGTGA	5 cut(s)	203, 218, 631, 685, 846
Hpy166II	GTNNAC	2 cut(s)	339, 669
Hpy188I	TCNGA	5 cut(s)	454, 660, 750, 923, 973
Hpy188III	TCNNGA	2 cut(s)	574, 1020
Hpy8I	GTNNAC	2 cut(s)	339, 669
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	974
HpyCH4III	ACNGT	2 cut(s)	673, 980
HpyCH4IV	ACGT	3 cut(s)	171, 474, 876
HpyCH4V	TGCA	7 cut(s)	260, 458, 549, 609, 682, 716, 733
HpyF3I	CTNAG	4 cut(s)	35, 162, 333, 659
HpySE526I	ACGT	3 cut(s)	171, 474, 876
Hsp92II	CATG	6 cut(s)	204, 213, 446, 491, 682, 809
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	374, 798
LmnI	GCTCC	3 cut(s)	98, 483, 587
LweI	GCATC	3 cut(s)	445, 585, 703
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	3 cut(s)	171, 474, 876
MaeIII	GTNAC	2 cut(s)	253, 673
MalI	GATC	2 cut(s)	376, 800
MboI	GATC	2 cut(s)	374, 798
MboII	GAAGA	4 cut(s)	137, 371, 432, 965
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	829
MluCI	AATT	3 cut(s)	72, 222, 724
MluNI	TGGCCA	1 cut(s)	829
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	6 cut(s)	146, 484, 508, 647, 910, 915
Mox20I	TGGCCA	1 cut(s)	829
MscI	TGGCCA	1 cut(s)	829
MseI	TTAA	5 cut(s)	503, 722, 992, 1001, 1008
MslI	CAYNNNNRTG	2 cut(s)	89, 810
Msp20I	TGGCCA	1 cut(s)	829
MssI	GTTTAAAC	1 cut(s)	993
Mva1269I	GAATGC	2 cut(s)	260, 586
MvnI	CGCG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	2 cut(s)	374, 798
NlaIII	CATG	6 cut(s)	204, 213, 446, 491, 682, 809
NmeAIII	GCCGAG	1 cut(s)	176
NmuCI	GTSAC	2 cut(s)	253, 673
NspI	RCATGY	1 cut(s)	446
PciI	ACATGT	1 cut(s)	442
PctI	GAATGC	2 cut(s)	260, 586
PleI	GAGTC	1 cut(s)	65
PmeI	GTTTAAAC	1 cut(s)	993
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	475
PscI	ACATGT	1 cut(s)	442
PspEI	GGTNACC	1 cut(s)	673
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	2 cut(s)	875, 917
RsaNI	GTAC	2 cut(s)	874, 916
RseI	CAYNNNNRTG	2 cut(s)	89, 810
SaqAI	TTAA	5 cut(s)	503, 722, 992, 1001, 1008
Sau3AI	GATC	2 cut(s)	374, 798
SchI	GAGTC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	9 cut(s)	41, 91, 174, 350, 477, 568, 879, 902, 966
SfaNI	GCATC	3 cut(s)	445, 585, 703
SmiMI	CAYNNNNRTG	2 cut(s)	89, 810
Sse9I	AATT	3 cut(s)	72, 222, 724
SsiI	CCGC	1 cut(s)	986
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	2 cut(s)	673, 980
TaiI	ACGT	3 cut(s)	174, 477, 879
TaqII	GACCGA	1 cut(s)	676
TasI	AATT	3 cut(s)	72, 222, 724
Tru1I	TTAA	5 cut(s)	503, 722, 992, 1001, 1008
Tru9I	TTAA	5 cut(s)	503, 722, 992, 1001, 1008
TscAI	CASTG	4 cut(s)	310, 341, 597, 800
TseFI	GTSAC	2 cut(s)	253, 673
Tsp45I	GTSAC	2 cut(s)	253, 673
TspDTI	ATGAA	4 cut(s)	138, 210, 610, 794
TspRI	CASTG	4 cut(s)	310, 341, 597, 800
XceI	RCATGY	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.