Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005961

Physical Location & Seq

Genomic Coordinates Reverse (-)

1813557 .. 1816513

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1029400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTTATAGCGTTACTAATGATATGGAAATATGATGGTAAAGACCATTCAAAATCTGACGGAAGAGATACTCAGCAGGACATAAGCCAGGATTTCTCTGGCGATGAAGCGTGGAGACCCTGCCTCAAAGAAATTCATCCCGTTTGGCTGCTGATTTACCGAGTTATTTCATTCTCTTTCCTTTTGGCAACGCTGATCATTAAAGTTGCTATCTCTGGCAGTCGCATATTTTACTTCTATACTCAGTGGACTTTTACCTTGGTTACCATCTACTTCGGGTTTGGATCTCTTCTCTCCATTTACGGGTGCTTCTGGTGCAAGAAAACAAGCAGCACGAGAACTCTAGGAGATTATGATCATGTCGGGACAGATGCAGAAAATGGAACATACATTCCCCTTGAAAATGAGGAGAAAGACTCAAGTCCCCAAGACGAAAGTTGTCTTCCCCGAGCAGCAGCCAATTGCAGTCGTGTCTTTGAAGCTATGTTCGAGATGAGTGCCGGGGCAGTGATGCTTACTGATTGCATCTATTGGCTCGTCATATTTCCGTTTTTCACCATCATAGATTACAAAATGAGTTTCCTGACGGTGGATATGCATTCAATCAACGCTGTTTTACTCCTCGGCGATGCAATGTTGAATTGCTTGCATCTCCCCTTTGTTCGGATATCTTACTTCATTTTATGGACCGGTGTCTTCGTCATTTTCCAGTGGACCGTCCACGCTTGCGTATCAGTACGGTGGCCGTACCCGTTTCTTGACTTGTCATCGCCATATGCACCGTTGTGGTACTTCTTGATGGGATTGATGCACATTCCCTGCTACGGTATCTTTGCCCTAATCGTGAAGTTAAAACATTACCTCTTGTCAAAATGGTTTCCCAACTCTTATCGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

34.62

Weight (kDa)

6.04

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27770 AT3G27770
fragaria_vesca	FvH4_6g51020 FvH4_6g51020 FvH4_6g51020 FvH4_6g51020
malus_domestica	MD09G1029400.v1.1
prunus_persica	Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1 Prupe.3G288000_v2.0.a1
pyrus_communis	pycom111g02340
rosa_chinensis	RchiOBHm_Chr2g0172561
rosa_laevigata	RLG00000016015 RLG00000021672 RLG00000022116
rosa_multiflora	Rmu_sc0000912.1_g000005
rosa_roxburghii	Rroxscaffold_2G00079760
rosa_rugosa	Rorug02G0559900.1 Rorug02G0560000
rosa_samantha	Rh2AG636000 Rh2BG649400 Rh2CG616200 Rh2DG663800 Rh3AG202400
rosa_wichuraiana	Rw2G052620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	3 cut(s)	738, 749, 791
AfiI	CCNNNNNNNGG	4 cut(s)	303, 589, 663, 824
AgeI	ACCGGT	1 cut(s)	689
AgsI	TTSAA	5 cut(s)	51, 401, 479, 603, 640
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	784
AloI	GAACNNNNNNTCC	2 cut(s)	376, 408
AluBI	AGCT	1 cut(s)	482
AluI	AGCT	1 cut(s)	482
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	4 cut(s)	148, 330, 452, 455
ApoI	RAATTY	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	687, 714
AsuC2I	CCSGG	1 cut(s)	502
AsuHPI	GGTGA	1 cut(s)	547
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	2 cut(s)	687, 714
BauI	CACGAG	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	434, 688
BbvI	GCAGC	4 cut(s)	135, 342, 464, 467
BccI	CCATC	4 cut(s)	29, 275, 566, 793
BceAI	ACGGC	1 cut(s)	730
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	2 cut(s)	195, 355
BcnI	CCSGG	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	4 cut(s)	149, 331, 453, 456
BlsI	GCNGC	4 cut(s)	150, 332, 454, 457
Bme1390I	CCNGG	2 cut(s)	89, 502
Bme18I	GGWCC	2 cut(s)	687, 714
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	687, 714
BmrFI	CCNGG	2 cut(s)	89, 502
BmsI	GCATC	6 cut(s)	361, 501, 534, 619, 658, 798
BoxI	GACNNNNGTC	2 cut(s)	420, 692
BpiI	GAAGAC	2 cut(s)	434, 688
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	502
Bsa29I	ATCGAT	1 cut(s)	892
BsaBI	GATNNNNATC	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	258, 501, 622
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	4 cut(s)	303, 589, 663, 824
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	709
Bse3DI	GCAATG	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	892
BseDI	CCNNGG	3 cut(s)	258, 501, 622
BseGI	GGATG	1 cut(s)	136
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	4 cut(s)	303, 589, 663, 824
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	86, 257
BseNI	ACTGG	1 cut(s)	709
BseRI	GAGGAG	2 cut(s)	422, 611
BseXI	GCAGC	4 cut(s)	135, 342, 464, 467
BshFI	GGCC	1 cut(s)	745
BshTI	ACCGGT	1 cut(s)	689
BshVI	ATCGAT	1 cut(s)	892
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	501, 690
BslFI	GGGAC	2 cut(s)	379, 408
BslI	CCNNNNNNNGG	4 cut(s)	303, 589, 663, 824
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	379, 408
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	745
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	195, 284, 355
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	85, 256
BspDI	ATCGAT	1 cut(s)	892
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	709
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	3 cut(s)	258, 501, 622
BssMI	GATC	3 cut(s)	195, 284, 355
BssSI	CACGAG	1 cut(s)	334
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	5 cut(s)	589, 718, 741, 783, 827
Bst6I	CTCTTC	2 cut(s)	58, 294
BstC8I	GCNNGC	2 cut(s)	647, 727
BstDEI	CTNAG	2 cut(s)	72, 243
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	198, 287, 358
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	195, 284, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	89
BstPAI	GACNNNNGTC	2 cut(s)	420, 692
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	87, 500
BstV1I	GCAGC	4 cut(s)	135, 342, 464, 467
BstV2I	GAAGAC	2 cut(s)	434, 688
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu15I	ATCGAT	1 cut(s)	892
BsuRI	GGCC	1 cut(s)	745
BsuTUI	ATCGAT	1 cut(s)	892
BtgZI	GCGATG	3 cut(s)	117, 642, 753
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	251, 513, 716
Cac8I	GCNNGC	2 cut(s)	647, 727
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	687, 714
ClaI	ATCGAT	1 cut(s)	892
Csp6I	GTAC	3 cut(s)	737, 748, 790
CspAI	ACCGGT	1 cut(s)	689
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	6 cut(s)	87, 148, 458, 482, 535, 745
CviKI_1	RGCY	6 cut(s)	87, 148, 458, 482, 535, 745
CviQI	GTAC	3 cut(s)	737, 748, 790
DdeI	CTNAG	2 cut(s)	72, 243
DpnI	GATC	3 cut(s)	197, 286, 357
DpnII	GATC	3 cut(s)	195, 284, 355
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	2 cut(s)	58, 294
EarI	CTCTTC	2 cut(s)	58, 294
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	687, 714
Eco88I	CYCGRG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	362
FaqI	GGGAC	2 cut(s)	379, 408
FatI	CATG	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	775
FbaI	TGATCA	2 cut(s)	195, 355
Fnu4HI	GCNGC	4 cut(s)	149, 331, 453, 456
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	4 cut(s)	149, 331, 453, 456
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	4 cut(s)	149, 331, 453, 456
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	2 cut(s)	501, 690
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	2 cut(s)	501, 690
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	3 cut(s)	249, 714, 721
Hpy188I	TCNGA	2 cut(s)	58, 666
Hpy188III	TCNNGA	6 cut(s)	364, 490, 583, 758, 796, 844
Hpy8I	GTNNAC	3 cut(s)	249, 714, 721
HpyCH4III	ACNGT	5 cut(s)	589, 718, 741, 783, 827
HpyCH4V	TGCA	9 cut(s)	318, 374, 465, 525, 598, 632, 649, 779, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	72, 243
Hsp92II	CATG	1 cut(s)	362
Ksp22I	TGATCA	2 cut(s)	195, 355
Kzo9I	GATC	3 cut(s)	195, 284, 355
Lsp1109I	GCAGC	4 cut(s)	135, 342, 464, 467
LweI	GCATC	6 cut(s)	361, 501, 534, 619, 658, 798
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	2 cut(s)	12, 262
MalI	GATC	3 cut(s)	197, 286, 357
MboI	GATC	3 cut(s)	195, 284, 355
MboII	GAAGA	4 cut(s)	75, 281, 434, 688
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	1 cut(s)	284
MluCI	AATT	3 cut(s)	132, 460, 640
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	4 cut(s)	134, 400, 632, 872
Mph1103I	ATGCAT	1 cut(s)	600
MseI	TTAA	3 cut(s)	201, 851, 898
MslI	CAYNNNNRTG	1 cut(s)	784
MspI	CCGG	2 cut(s)	501, 690
MspR9I	CCNGG	2 cut(s)	89, 502
MunI	CAATTG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	502
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	3 cut(s)	195, 284, 355
NlaIII	CATG	1 cut(s)	362
NmeAIII	GCCGAG	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	600
OliI	CACNNNNGTG	1 cut(s)	784
PctI	GAATGC	1 cut(s)	598
PinAI	ACCGGT	1 cut(s)	689
PkrI	GCNGC	4 cut(s)	150, 332, 454, 457
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PshAI	GACNNNNGTC	2 cut(s)	420, 692
Psp6I	CCWGG	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	687, 714
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	3 cut(s)	738, 749, 791
RsaNI	GTAC	3 cut(s)	737, 748, 790
RseI	CAYNNNNRTG	1 cut(s)	784
SaqAI	TTAA	3 cut(s)	201, 851, 898
SatI	GCNGC	4 cut(s)	149, 331, 453, 456
Sau3AI	GATC	3 cut(s)	195, 284, 355
Sau96I	GGNCC	2 cut(s)	687, 714
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	89, 502
SetI	ASST	3 cut(s)	260, 484, 864
SfaNI	GCATC	6 cut(s)	361, 501, 534, 619, 658, 798
SinI	GGWCC	2 cut(s)	687, 714
SmiMI	CAYNNNNRTG	1 cut(s)	784
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	3 cut(s)	132, 460, 640
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	87, 500
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	589, 718, 741, 783, 827
TaqI	TCGA	2 cut(s)	489, 892
TasI	AATT	3 cut(s)	132, 460, 640
Tru1I	TTAA	3 cut(s)	201, 851, 898
Tru9I	TTAA	3 cut(s)	201, 851, 898
TscAI	CASTG	3 cut(s)	251, 513, 716
TseI	GCWGC	4 cut(s)	148, 330, 452, 455
TspDTI	ATGAA	4 cut(s)	120, 125, 159, 667
TspGWI	ACGGA	2 cut(s)	75, 537
TspRI	CASTG	3 cut(s)	251, 513, 716
VpaK11BI	GGWCC	2 cut(s)	687, 714
XapI	RAATTY	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	344
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.