AT3G27925

Protease Do-like 1, chloroplastic

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
10365652 .. 10369013
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27925.2

Sequence Viewer

Length: 1320 bp
ATGGCGACGACGACGAGTTGTTCGCTTCTCCTTTCTTCCACTCTCTTCCTTCACTCTCCTCCTTCTTCTCACCTCTCCTTCTTCAATCTCTCTTCTTCACGATCCTCTCCAATTTCTCTTTACCCAATCCGATCCAAACGCTATTTCCGAATCCTCTCGAAGCTTTCACTAAACGACAACAACAGAGACGACGATGATGATACTCTTCATTTTACTCCGTTCTCCGCCGTTAAACCTTTCTTCCTCCTCTGTACCTCCGTCGCGTTATCGTTTTCACTCTTCGCCGCTTCTCCCGCCGTTGAATCTGCCTCGGCGTTTGTAGTTAGTACTCCGAAGAAACTTCAAACTGATGAGCTCGCGACGGTTCGTTTGTTTCAAGAGAACACTCCTTCCGTTGTTTACATCACTAATCTCGCCGTGAGGCAGGACGCGTTTACATTGGACGTTCTTGAGGTACCTCAAGGCTCTGGTTCAGGATTTGTGTGGGATAAGCAAGGTCATATTGTTACCAATTACCATGTTATTCGTGGTGCTTCTGATCTCAGGGTCACTCTTGCTGATCAAACAACATTTGATGCAAAAGTTGTTGGATTTGACCAAGATAAGGATGTTGCAGTATTACGTATTGATGCACCGAAAAACAAATTAAGACCTATACCTGTTGGAGTCTCTGCTGATCTGCTTGTTGGCCAGAAAGTCTTTGCCATTGGCAATCCATTTGGACTTGATCATACTCTCACAACTGGTGTTATAAGTGGTTTGCGAAGAGAAATTAGTTCTGCTGCAACTGGTCGTCCAATTCAAGATGTGATACAGACAGATGCAGCCATTAACCCTGGTAACAGCGGAGGACCTCTTCTAGATAGCTCAGGAACGTTAATTGGTATAAACACAGCCATTTATTCTCCTTCTGGTGCATCTTCTGGAGTGGGCTTTTCGATCCCAGTTGATACAGTTGGTGGTATCGTTGATCAGCTGGTGAGATTTGGTAAAGTCACCAGACCAATCTTAGGTATCAAATTCGCACCGGACCAATCTGTTGAGCAATTGGGAGTGAGCGGTGTGCTCGTCTTGGATGCTCCTCCAAGTGGTCCAGCCGGCAAAGCCGGACTTCAGTCAACAAAACGTGATGGTTACGGGAGACTAGTACTAGGAGACATAATCACGTCGGTGAACGGTACAAAAGTCTCTAACGGGAGTGATCTGTACCGGATTCTCGATCAATGCAAAGTCGGCGATGAGGTGACCGTAGAGGTTCTAAGAGGCGATCACAAGGAGAAAATCTCTGTAACTCTCGAACCAAAGCCGGACGAGTCTTAG

Protein Analysis

439

Amino Acids

46.67

Weight (kDa)

6.0

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin_2 PF13365 157 - 296 1.6e-36 Trypsin-like peptidase domain
Trypsin PF00089 158 - 318 3.2e-19 Trypsin
PDZ_2 PF13180 335 - 432 1.2e-13 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 752
Acc65I GGTACC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 454
AccBSI CCGCTC 1 cut(s) 1059
AccII CGCG 3 cut(s) 263, 359, 431
AciI CCGC 5 cut(s) 225, 285, 294, 846, 1059
AclI AACGTT 1 cut(s) 875
AclWI GGATC 3 cut(s) 96, 126, 934
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 1 cut(s) 1019
AcuI CTGAAG 1 cut(s) 1097
AfaI GTAC 6 cut(s) 253, 328, 456, 1149, 1180, 1208
AfiI CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 5 cut(s) 85, 302, 344, 377, 803
AhlI ACTAGT 1 cut(s) 1144
AjiI CACGTC 1 cut(s) 1167
AjnI CCWGG 1 cut(s) 835
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AleI CACNNNNGTG 1 cut(s) 1169
AloI GAACNNNNNNTCC 2 cut(s) 374, 406
AluBI AGCT 4 cut(s) 163, 355, 867, 976
AluI AGCT 4 cut(s) 163, 355, 867, 976
Alw21I GWGCWC 2 cut(s) 357, 1068
Alw26I GTCTC 5 cut(s) 180, 673, 1135, 1149, 1192
AlwI GGATC 3 cut(s) 96, 126, 934
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 2 cut(s) 782, 824
ApoI RAATTY 1 cut(s) 1019
ArsI GACNNNNNNTTYG 3 cut(s) 36, 352, 384
Asp718I GGTACC 1 cut(s) 454
AspS9I GGNCC 3 cut(s) 851, 1030, 1091
AsuHPI GGTGA 5 cut(s) 62, 988, 991, 1183, 1255
AvaII GGWCC 3 cut(s) 851, 1030, 1091
BaeI ACNNNNGTAYC 2 cut(s) 1170, 1203
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 357, 1068
BbvI GCAGC 2 cut(s) 769, 836
BccI CCATC 1 cut(s) 1124
BceAI ACGGC 3 cut(s) 212, 281, 401
BciT130I CCWGG 1 cut(s) 837
BclI TGATCA 3 cut(s) 559, 727, 970
BcoDI GTCTC 5 cut(s) 180, 673, 1135, 1149, 1192
BcuI ACTAGT 1 cut(s) 1144
BfaI CTAG 3 cut(s) 860, 1145, 1151
BisI GCNGC 3 cut(s) 285, 783, 825
BlsI GCNGC 3 cut(s) 286, 784, 826
BmcAI AGTACT 2 cut(s) 328, 1149
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 3 cut(s) 851, 1030, 1091
BmgBI CACGTC 1 cut(s) 1167
BmgT120I GGNCC 3 cut(s) 851, 1030, 1091
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 1 cut(s) 938
BmsI GCATC 5 cut(s) 565, 619, 811, 926, 1066
BmuI ACTGGG 1 cut(s) 938
BoxI GACNNNNGTC 1 cut(s) 1114
BplI GAGNNNNNCTC 2 cut(s) 1268, 1300
BpmI CTGGAG 1 cut(s) 945
Bpu10I CCTNAGC 1 cut(s) 868
BpuEI CTTGAG 2 cut(s) 444, 470
BsaAI YACGTR 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 309, 835
BsaWI WCCGGW 2 cut(s) 1027, 1209
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
Bse118I RCCGGY 1 cut(s) 1097
Bse1I ACTGG 3 cut(s) 748, 793, 944
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 2 cut(s) 309, 835
BseGI GGATG 2 cut(s) 613, 1081
BseLI CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
BseMII CTCAG 2 cut(s) 556, 882
BseNI ACTGG 3 cut(s) 748, 793, 944
BseRI GAGGAG 3 cut(s) 48, 236, 1071
BseXI GCAGC 2 cut(s) 769, 836
Bsh1236I CGCG 3 cut(s) 263, 359, 431
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 1 cut(s) 454
BsiHKAI GWGCWC 2 cut(s) 357, 1068
BsiSI CCGG 5 cut(s) 1028, 1098, 1107, 1210, 1307
BslI CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
BsmAI GTCTC 5 cut(s) 180, 673, 1135, 1149, 1192
BsmBI CGTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 690
Bsp1286I GDGCHC 2 cut(s) 357, 1068
Bsp68I TCGCGA 1 cut(s) 359
BspACI CCGC 5 cut(s) 225, 285, 294, 846, 1059
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 2 cut(s) 555, 881
BspFNI CGCG 3 cut(s) 263, 359, 431
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 3 cut(s) 96, 126, 934
BspT107I GGYRCC 1 cut(s) 454
BsrBI CCGCTC 1 cut(s) 1059
BsrFI RCCGGY 1 cut(s) 1097
BsrI ACTGG 3 cut(s) 748, 793, 944
BssAI RCCGGY 1 cut(s) 1097
BssECI CCNNGG 2 cut(s) 309, 835
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 4 cut(s) 364, 955, 1178, 1249
Bst6I CTCTTC 6 cut(s) 50, 97, 210, 284, 760, 861
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 357, 1099
BstDEI CTNAG 5 cut(s) 542, 868, 1009, 1259, 1317
BstEII GGTNACC 1 cut(s) 1243
BstF5I GGATG 2 cut(s) 613, 1081
BstFNI CGCG 3 cut(s) 263, 359, 431
BstMAI GTCTC 5 cut(s) 180, 673, 1135, 1149, 1192
BstMWI GCNNNNNNNGC 3 cut(s) 293, 1103, 1233
BstNI CCWGG 1 cut(s) 837
BstPAI GACNNNNGTC 1 cut(s) 1114
BstPI GGTNACC 1 cut(s) 1243
BstSCI CCNGG 1 cut(s) 835
BstSNI TACGTA 1 cut(s) 623
BstUI CGCG 3 cut(s) 263, 359, 431
BstV1I GCAGC 2 cut(s) 769, 836
BsuRI GGCC 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 1251
BtrI CACGTC 1 cut(s) 1167
BtsCI GGATG 2 cut(s) 613, 1081
BtuMI TCGCGA 1 cut(s) 359
Cac8I GCNNGC 2 cut(s) 357, 1099
Cfr10I RCCGGY 1 cut(s) 1097
Cfr13I GGNCC 3 cut(s) 851, 1030, 1091
CseI GACGC 1 cut(s) 437
Csp6I GTAC 6 cut(s) 252, 327, 455, 1148, 1179, 1207
CviAII CATG 1 cut(s) 518
CviQI GTAC 6 cut(s) 252, 327, 455, 1148, 1179, 1207
DdeI CTNAG 5 cut(s) 542, 868, 1009, 1259, 1317
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 6 cut(s) 50, 97, 210, 284, 760, 861
EarI CTCTTC 6 cut(s) 50, 97, 210, 284, 760, 861
EciI GGCGGA 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 355
Eco105I TACGTA 1 cut(s) 623
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 3 cut(s) 851, 1030, 1091
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 1097
Eco91I GGTNACC 1 cut(s) 1243
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 851
EcoO65I GGTNACC 1 cut(s) 1243
EcoRII CCWGG 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 357
Esp3I CGTCTC 1 cut(s) 180
FaeI CATG 1 cut(s) 521
FaiI YATR 7 cut(s) 501, 519, 656, 732, 752, 887, 1160
FalI AAGNNNNNCTT 2 cut(s) 1095, 1127
FatI CATG 1 cut(s) 517
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 3 cut(s) 559, 727, 970
Fnu4HI GCNGC 3 cut(s) 285, 783, 825
FokI GGATG 2 cut(s) 620, 1088
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 285, 783, 825
FspBI CTAG 3 cut(s) 860, 1145, 1151
GluI GCNGC 3 cut(s) 285, 783, 825
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 1 cut(s) 690
HapII CCGG 5 cut(s) 1028, 1098, 1107, 1210, 1307
HgaI GACGC 1 cut(s) 437
Hin1II CATG 1 cut(s) 521
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 5 cut(s) 150, 302, 666, 1213, 1313
HpaII CCGG 5 cut(s) 1028, 1098, 1107, 1210, 1307
HphI GGTGA 5 cut(s) 62, 988, 991, 1183, 1255
Hpy166II GTNNAC 4 cut(s) 400, 435, 1119, 1174
Hpy188I TCNGA 4 cut(s) 131, 149, 333, 538
Hpy8I GTNNAC 4 cut(s) 400, 435, 1119, 1174
Hpy99I CGWCG 7 cut(s) 10, 13, 16, 194, 263, 364, 1171
HpyAV CCTTC 5 cut(s) 59, 72, 88, 399, 918
HpyCH4III ACNGT 4 cut(s) 364, 955, 1178, 1249
HpyCH4IV ACGT 5 cut(s) 444, 622, 875, 1126, 1166
HpyCH4V TGCA 7 cut(s) 578, 614, 632, 785, 824, 917, 1227
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 1103, 1233
HpyF3I CTNAG 5 cut(s) 542, 868, 1009, 1259, 1317
HpySE526I ACGT 5 cut(s) 444, 622, 875, 1126, 1166
Hsp92II CATG 1 cut(s) 521
KpnI GGTACC 1 cut(s) 458
KroI GCCGGC 1 cut(s) 1097
KroNI GCCGGC 1 cut(s) 1099
Ksp22I TGATCA 3 cut(s) 559, 727, 970
LmnI GCTCC 1 cut(s) 1084
Lsp1109I GCAGC 2 cut(s) 769, 836
LweI GCATC 5 cut(s) 565, 619, 811, 926, 1066
MaeI CTAG 3 cut(s) 860, 1145, 1151
MaeII ACGT 5 cut(s) 444, 622, 875, 1126, 1166
MaeIII GTNAC 7 cut(s) 505, 547, 839, 994, 1133, 1243, 1288
MbiI CCGCTC 1 cut(s) 1059
MfeI CAATTG 1 cut(s) 1046
MhlI GDGCHC 2 cut(s) 357, 1068
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 8 cut(s) 111, 511, 644, 771, 798, 879, 1019, 1046
MluI ACGCGT 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 2 cut(s) 568, 643
Mox20I TGGCCA 1 cut(s) 690
MroNI GCCGGC 1 cut(s) 1097
MscI TGGCCA 1 cut(s) 690
MseI TTAA 4 cut(s) 231, 647, 831, 878
MslI CAYNNNNRTG 1 cut(s) 1169
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 2 cut(s) 846, 976
MspI CCGG 5 cut(s) 1028, 1098, 1107, 1210, 1307
MspR9I CCNGG 1 cut(s) 837
MunI CAATTG 1 cut(s) 1046
MvaI CCWGG 1 cut(s) 837
MvnI CGCG 3 cut(s) 263, 359, 431
MwoI GCNNNNNNNGC 3 cut(s) 293, 1103, 1233
NaeI GCCGGC 1 cut(s) 1099
NgoMIV GCCGGC 1 cut(s) 1097
NlaIII CATG 1 cut(s) 521
NlaIV GGNNCC 1 cut(s) 456
NmeAIII GCCGAG 1 cut(s) 290
NmuCI GTSAC 3 cut(s) 547, 994, 1243
NruI TCGCGA 1 cut(s) 359
OliI CACNNNNGTG 1 cut(s) 1169
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 1099
PfeI GAWTC 3 cut(s) 150, 302, 1213
PkrI GCNGC 3 cut(s) 286, 784, 826
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Ppu21I YACGTR 1 cut(s) 623
PpuMI RGGWCCY 1 cut(s) 851
PshAI GACNNNNGTC 1 cut(s) 1114
PsiI TTATAA 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 851
Psp6I CCWGG 1 cut(s) 835
PspEI GGTNACC 1 cut(s) 1243
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 1 cut(s) 456
PspPI GGNCC 3 cut(s) 851, 1030, 1091
PspPPI RGGWCCY 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 976
RruI TCGCGA 1 cut(s) 359
RsaI GTAC 6 cut(s) 253, 328, 456, 1149, 1180, 1208
RsaNI GTAC 6 cut(s) 252, 327, 455, 1148, 1179, 1207
RseI CAYNNNNRTG 1 cut(s) 1169
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 4 cut(s) 231, 647, 831, 878
SatI GCNGC 3 cut(s) 285, 783, 825
Sau96I GGNCC 3 cut(s) 851, 1030, 1091
ScaI AGTACT 2 cut(s) 328, 1149
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 1 cut(s) 837
SduI GDGCHC 2 cut(s) 357, 1068
SfaNI GCATC 5 cut(s) 565, 619, 811, 926, 1066
SinI GGWCC 3 cut(s) 851, 1030, 1091
SmiMI CAYNNNNRTG 1 cut(s) 1169
SmlI CTYRAG 2 cut(s) 449, 459
SmoI CTYRAG 2 cut(s) 449, 459
SnaBI TACGTA 1 cut(s) 623
SpeI ACTAGT 1 cut(s) 1144
Sse9I AATT 8 cut(s) 111, 511, 644, 771, 798, 879, 1019, 1046
SsiI CCGC 5 cut(s) 225, 285, 294, 846, 1059
SspMI CTAG 3 cut(s) 860, 1145, 1151
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 1 cut(s) 835
TaaI ACNGT 4 cut(s) 364, 955, 1178, 1249
TaiI ACGT 5 cut(s) 447, 625, 878, 1129, 1169
TaqI TCGA 4 cut(s) 158, 938, 1218, 1296
TasI AATT 8 cut(s) 111, 511, 644, 771, 798, 879, 1019, 1046
TatI WGTACW 2 cut(s) 326, 1147
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 3 cut(s) 150, 302, 1213
Tru1I TTAA 4 cut(s) 231, 647, 831, 878
Tru9I TTAA 4 cut(s) 231, 647, 831, 878
TseFI GTSAC 3 cut(s) 547, 994, 1243
TseI GCWGC 2 cut(s) 782, 824
Tsp45I GTSAC 3 cut(s) 547, 994, 1243
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 3 cut(s) 207, 247, 382
VpaK11BI GGWCC 3 cut(s) 851, 1030, 1091
XapI RAATTY 1 cut(s) 1019
XbaI TCTAGA 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XspI CTAG 3 cut(s) 860, 1145, 1151
ZrmI AGTACT 2 cut(s) 328, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.