FvH4_6g50761

Protease Do-like 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37725107 .. 37728241
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50761.t1

Sequence Viewer

Length: 1329 bp
ATGGCTGCTTCTTCTCTGATCTCCACAACCTTCCACTTCTCTTCTCCATTGTTCCCTCCTCACCCCTCCCCAATCCGAAAGCTCACCATTCTTTCCCTCCACAAACTCCCAACCCCATCTTCTTCAAATCTCAAAACCCTCAAACGGTCTGTGTTCCCCTACTGCCCTCCATGTCTCAACAAGCTTCTCCTCACCACCACCACCACCACCACCACCACCAAGAACAATCCATTCTTGTTTGCTCTCGACTCGTTGCTCATTCTCTGCACTTCTCTAGCTCTGGCCTTGTCCCTGTTCGTCACCGACGTTGACTCGGCGTCTGCGTTTGTAGTCACGCCGCAGAAGAAGCTCCAGACGGATGAGCTCGCTACGGTGCGGCTGTTCCAGGAGAACACTCCCTCTGTGGTTTACATCACCAATCTCGCCGCCAAGCAGGATGCGTTTACTTTGGACGTGTTTGAGGTGCCGCAGGGGTCTGGTTCGGGGTTTGTGTGGGATAAACAAGGCAACATTGTCACCAATTATCATGTCATTCGCGGCGCGTCTGATCTCAGGGTCACTCTTGCTGACCAGTCAACTTTTGATGCAAAAGTCGTGGGATTTGACCAAGATAAGGATGTTGCGGTTTTACATGTTGATGCACCCAAGGACAAACTAAGGCCTATACCGGTTGGTGTCTCTGCAGACTTGCTAGTTGGTCAGAAAGTTTTTGCTATTGGCAATCCTTTTGGACTTGACCATACCCTTACAACTGGTGTTATCAGTGGACTACGCAGAGAAATCAGTTCGGCTGCAACTGGCCGTCCAATCCAAGATGTTATACAGACAGACGCTGCCATTAACCCCGGTAATAGTGGAGGGCCACTTCTAGACAGTTCAGGGAGCCTTATTGGGATAAATACTGCAATATATTCTCCATCTGGTGCATCATCTGGTGTTGGGTTTTCTATTCCAGTTGATACTGTAAATGGCATTGTTGACCAGTTGGTCAAATTCGGGAAGGTCACTAGACCTATTTTAGGAATTAAGTTTGCACCTGATCAATCTGTTGAGCAGTTGGGGGTCAGTGGAGTGCTTGTCCTAGATGCACCAGCAAATGGTCCAGCTGGAAAAGCGGGACTCCTACCGACAAAGCGTGATTCTTATGGCAGACTCATATTGGGTGACATCATAACTTCTGTGAATGGAAAAAAAGTCACAAATGGCAGCGACCTGTATAGAATTCTTGACCAATGTAACGTAGGGGATAAGGTGATTGTCGAGGTGTTGCGTGGTGATCAGAAAGAAAAAATCCCTGTTGTTCTTGAACCAAAGGCAGACGAGTCATGA

Protein Analysis

443

Amino Acids

46.84

Weight (kDa)

7.01

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin_2 PF13365 160 - 299 1e-34 Trypsin-like peptidase domain
Trypsin PF00089 161 - 323 3.4e-19 Trypsin
PDZ_2 PF13180 338 - 433 3.5e-11 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 986
AccB1I GGYRCC 1 cut(s) 463
AccB7I CCANNNNNTGG 1 cut(s) 1097
AccII CGCG 2 cut(s) 537, 542
AciI CCGC 7 cut(s) 338, 376, 426, 467, 537, 623, 1115
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 2 cut(s) 992, 1221
AcyI GRCGYC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 144, 613, 1019, 1097
AflIII ACRYGT 2 cut(s) 453, 631
AgeI ACCGGT 1 cut(s) 667
AgsI TTSAA 2 cut(s) 126, 1307
AhdI GACNNNNNGTC 1 cut(s) 316
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 103, 135
AluBI AGCT 6 cut(s) 82, 184, 278, 349, 364, 1106
AluI AGCT 6 cut(s) 82, 184, 278, 349, 364, 1106
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 179, 682
AlwNI CAGNNNCTG 1 cut(s) 833
AoxI GGCC 4 cut(s) 282, 659, 799, 860
ApeKI GCWGC 4 cut(s) 5, 791, 833, 1206
ApoI RAATTY 2 cut(s) 992, 1221
AsiGI ACCGGT 1 cut(s) 667
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 860, 1100
AsuC2I CCSGG 1 cut(s) 846
AsuHPI GGTGA 9 cut(s) 53, 76, 184, 292, 406, 508, 1175, 1264, 1286
AvaII GGWCC 1 cut(s) 1100
BanI GGYRCC 1 cut(s) 463
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 778, 820, 1218
BccI CCATC 2 cut(s) 124, 925
BceAI ACGGC 1 cut(s) 786
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 2 cut(s) 1039, 1276
BcnI CCSGG 1 cut(s) 846
BcoDI GTCTC 2 cut(s) 179, 682
BfaI CTAG 5 cut(s) 275, 692, 869, 1008, 1082
BfmI CTRYAG 1 cut(s) 681
BisI GCNGC 9 cut(s) 6, 338, 377, 426, 467, 538, 792, 834, 1207
BlsI GCNGC 9 cut(s) 7, 339, 378, 427, 468, 539, 793, 835, 1208
Bme1390I CCNGG 2 cut(s) 386, 846
Bme18I GGWCC 1 cut(s) 1100
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 860, 1100
BmiI GGNNCC 2 cut(s) 465, 884
BmrFI CCNGG 2 cut(s) 386, 846
BmsI GCATC 5 cut(s) 427, 574, 628, 935, 1075
BpmI CTGGAG 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 645, 844
BsaWI WCCGGW 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 613, 1019, 1097
Bse118I RCCGGY 1 cut(s) 667
Bse1I ACTGG 5 cut(s) 571, 757, 802, 953, 982
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 645, 844
BseGI GGATG 3 cut(s) 364, 442, 622
BseLI CCNNNNNNNGG 4 cut(s) 144, 613, 1019, 1097
BseMII CTCAG 1 cut(s) 565
BseNI ACTGG 5 cut(s) 571, 757, 802, 953, 982
BseRI GAGGAG 2 cut(s) 48, 179
BseXI GCAGC 3 cut(s) 778, 820, 1218
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 2 cut(s) 537, 542
BshFI GGCC 4 cut(s) 284, 661, 801, 862
BshNI GGYRCC 1 cut(s) 463
BshTI ACCGGT 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 2 cut(s) 668, 846
BslFI GGGAC 2 cut(s) 274, 1131
BslI CCNNNNNNNGG 4 cut(s) 144, 613, 1019, 1097
BsmAI GTCTC 2 cut(s) 179, 682
BsmFI GGGAC 2 cut(s) 274, 1131
BsnI GGCC 4 cut(s) 284, 661, 801, 862
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 4 cut(s) 18, 547, 1039, 1276
BspACI CCGC 7 cut(s) 338, 376, 426, 467, 537, 623, 1115
BspANI GGCC 4 cut(s) 284, 661, 801, 862
BspCNI CTCAG 1 cut(s) 564
BspFNI CGCG 2 cut(s) 537, 542
BspHI TCATGA 1 cut(s) 1325
BspLI GGNNCC 2 cut(s) 465, 884
BspMAI CTGCAG 1 cut(s) 685
BspT107I GGYRCC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 667
BsrI ACTGG 5 cut(s) 571, 757, 802, 953, 982
BssAI RCCGGY 1 cut(s) 667
BssECI CCNNGG 2 cut(s) 645, 844
BssMI GATC 4 cut(s) 18, 547, 1039, 1276
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 645
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 4 cut(s) 147, 373, 875, 964
Bst6I CTCTTC 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 551, 656
BstENI CCTNNNNNAGG 1 cut(s) 1017
BstF5I GGATG 3 cut(s) 364, 442, 622
BstFNI CGCG 2 cut(s) 537, 542
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 4 cut(s) 21, 550, 1042, 1279
BstMAI GTCTC 2 cut(s) 179, 682
BstMBI GATC 4 cut(s) 18, 547, 1039, 1276
BstMWI GCNNNNNNNGC 2 cut(s) 346, 1112
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 384, 844
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 2 cut(s) 537, 542
BstV1I GCAGC 3 cut(s) 778, 820, 1218
BsuRI GGCC 4 cut(s) 284, 661, 801, 862
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 3 cut(s) 364, 442, 622
BtsIMutI CAGTG 2 cut(s) 769, 1072
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 833
CciI TCATGA 1 cut(s) 1325
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 667
Cfr13I GGNCC 2 cut(s) 860, 1100
CseI GACGC 3 cut(s) 306, 531, 839
CspAI ACCGGT 1 cut(s) 667
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 4 cut(s) 171, 527, 632, 1326
DdeI CTNAG 2 cut(s) 551, 656
DpnI GATC 4 cut(s) 20, 549, 1041, 1278
DpnII GATC 4 cut(s) 18, 547, 1039, 1276
DrdI GACNNNNNNGTC 1 cut(s) 986
DriI GACNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 986
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 645
Eco147I AGGCCT 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 1100
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoNI CCTNNNNNAGG 1 cut(s) 1017
EcoRI GAATTC 1 cut(s) 1221
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 645
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 4 cut(s) 174, 530, 635, 1329
FaqI GGGAC 2 cut(s) 274, 1131
FatI CATG 4 cut(s) 170, 526, 631, 1325
FauI CCCGC 1 cut(s) 1108
FbaI TGATCA 2 cut(s) 1039, 1276
Fnu4HI GCNGC 9 cut(s) 6, 338, 377, 426, 467, 538, 792, 834, 1207
FokI GGATG 3 cut(s) 371, 449, 629
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 9 cut(s) 6, 338, 377, 426, 467, 538, 792, 834, 1207
FspBI CTAG 5 cut(s) 275, 692, 869, 1008, 1082
GlaI GCGC 1 cut(s) 541
GluI GCNGC 9 cut(s) 6, 338, 377, 426, 467, 538, 792, 834, 1207
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 4 cut(s) 284, 661, 801, 862
HapII CCGG 2 cut(s) 668, 846
HgaI GACGC 3 cut(s) 306, 531, 839
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 4 cut(s) 174, 530, 635, 1329
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 3 cut(s) 310, 576, 979
HindII GTYRAC 3 cut(s) 310, 576, 979
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 6 cut(s) 248, 311, 1119, 1139, 1152, 1322
HpaII CCGG 2 cut(s) 668, 846
HphI GGTGA 9 cut(s) 53, 76, 184, 292, 406, 508, 1175, 1264, 1286
Hpy166II GTNNAC 6 cut(s) 310, 409, 444, 576, 767, 979
Hpy188I TCNGA 5 cut(s) 18, 77, 547, 702, 1281
Hpy188III TCNNGA 7 cut(s) 245, 352, 869, 997, 1226, 1304, 1326
Hpy8I GTNNAC 6 cut(s) 310, 409, 444, 576, 767, 979
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 40, 994
HpyCH4III ACNGT 4 cut(s) 147, 373, 875, 964
HpyCH4IV ACGT 3 cut(s) 306, 453, 1239
HpyCH4V TGCA 9 cut(s) 267, 587, 641, 683, 794, 905, 926, 1034, 1088
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 1112
HpyF3I CTNAG 2 cut(s) 551, 656
HpySE526I ACGT 3 cut(s) 306, 453, 1239
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 4 cut(s) 174, 530, 635, 1329
HspAI GCGC 1 cut(s) 540
Ksp22I TGATCA 2 cut(s) 1039, 1276
Kzo9I GATC 4 cut(s) 18, 547, 1039, 1276
LmnI GCTCC 2 cut(s) 354, 882
Lsp1109I GCAGC 3 cut(s) 778, 820, 1218
LweI GCATC 5 cut(s) 427, 574, 628, 935, 1075
MaeI CTAG 5 cut(s) 275, 692, 869, 1008, 1082
MaeII ACGT 3 cut(s) 306, 453, 1239
MaeIII GTNAC 8 cut(s) 298, 331, 514, 556, 1003, 1163, 1195, 1235
MalI GATC 4 cut(s) 20, 549, 1041, 1278
MboI GATC 4 cut(s) 18, 547, 1039, 1276
MboII GAAGA 5 cut(s) 3, 33, 111, 114, 355
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 520, 992, 1023, 1221
MlyI GAGTC 4 cut(s) 242, 305, 1113, 1146
MseI TTAA 2 cut(s) 840, 1026
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 2 cut(s) 668, 846
MspR9I CCNGG 2 cut(s) 386, 846
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 2 cut(s) 537, 542
MwoI GCNNNNNNNGC 2 cut(s) 346, 1112
NciI CCSGG 1 cut(s) 846
NdeII GATC 4 cut(s) 18, 547, 1039, 1276
NlaIII CATG 4 cut(s) 174, 530, 635, 1329
NlaIV GGNNCC 2 cut(s) 465, 884
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 7 cut(s) 298, 331, 514, 556, 1003, 1163, 1195
NspI RCATGY 1 cut(s) 635
PagI TCATGA 1 cut(s) 1325
PceI AGGCCT 1 cut(s) 661
PciI ACATGT 1 cut(s) 631
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 320
PfeI GAWTC 1 cut(s) 1139
PflMI CCANNNNNTGG 1 cut(s) 1097
PfoI TCCNGGA 1 cut(s) 384
PinAI ACCGGT 1 cut(s) 667
PkrI GCNGC 9 cut(s) 7, 339, 378, 427, 468, 539, 793, 835, 1208
PleI GAGTC 4 cut(s) 242, 305, 1113, 1146
PpsI GAGTC 4 cut(s) 242, 305, 1113, 1146
PscI ACATGT 1 cut(s) 631
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 465, 884
PspPI GGNCC 2 cut(s) 860, 1100
PstI CTGCAG 1 cut(s) 685
PstNI CAGNNNCTG 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 1106
RseI CAYNNNNRTG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 840, 1026
SatI GCNGC 9 cut(s) 6, 338, 377, 426, 467, 538, 792, 834, 1207
Sau3AI GATC 4 cut(s) 18, 547, 1039, 1276
Sau96I GGNCC 2 cut(s) 860, 1100
SchI GAGTC 4 cut(s) 242, 305, 1113, 1146
ScrFI CCNGG 2 cut(s) 386, 846
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 5 cut(s) 427, 574, 628, 935, 1075
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 1 cut(s) 1100
SmiMI CAYNNNNRTG 1 cut(s) 636
Sse9I AATT 4 cut(s) 520, 992, 1023, 1221
SseBI AGGCCT 1 cut(s) 661
SsiI CCGC 7 cut(s) 338, 376, 426, 467, 537, 623, 1115
SspMI CTAG 5 cut(s) 275, 692, 869, 1008, 1082
SstI GAGCTC 1 cut(s) 366
StuI AGGCCT 1 cut(s) 661
StyD4I CCNGG 2 cut(s) 384, 844
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 4 cut(s) 147, 373, 875, 964
TaiI ACGT 3 cut(s) 309, 456, 1242
TaqI TCGA 2 cut(s) 246, 1260
TasI AATT 4 cut(s) 520, 992, 1023, 1221
TauI GCSGC 5 cut(s) 340, 379, 428, 469, 540
TfiI GAWTC 1 cut(s) 1139
Tru1I TTAA 2 cut(s) 840, 1026
Tru9I TTAA 2 cut(s) 840, 1026
TscAI CASTG 2 cut(s) 769, 1072
TseFI GTSAC 7 cut(s) 298, 331, 514, 556, 1003, 1163, 1195
TseI GCWGC 4 cut(s) 5, 791, 833, 1206
Tsp45I GTSAC 7 cut(s) 298, 331, 514, 556, 1003, 1163, 1195
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 2 cut(s) 769, 1072
Van91I CCANNNNNTGG 1 cut(s) 1097
VpaK11BI GGWCC 1 cut(s) 1100
XagI CCTNNNNNAGG 1 cut(s) 1017
XapI RAATTY 2 cut(s) 992, 1221
XbaI TCTAGA 1 cut(s) 868
XceI RCATGY 1 cut(s) 635
XspI CTAG 5 cut(s) 275, 692, 869, 1008, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.