Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009878

Physical Location & Seq

Genomic Coordinates Forward (+)

88207244 .. 88210800

Gene Structure 3557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG657300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTGCTTCTTCCCTGATCTCCACAAACTTCCTCTTCTCTTCTCCATTGTTTCCTCCTCGCTCCCCAATCCGAAAGCTCACCATTGTTTCCCTCCACAAAATCCCAACCCCGTCTTCTTCACATGTCAAACCCCACAAACGGTCTCTGCTTCCCTGCAGACCCTTGTGCCCTCCGTGTCTCAACAAGCTTCTCCTCACCACCAAGAATCCCTTCTCGTTTGCCTTGGACTCCTTGCTCATTCTCTGCACTTCTCTAGCTCTGTCCCTGTCCCTGCTCGTCGCCGACGTCGACTCGGCCTCTGCTTTTGTGGTCACGCCGCAGAGGAAGCTGCAGACGGATGAGCTGGCTACGGTGCGGCTGTTCCAGGAGAACACTCCCTCTGTGGTTTACATCACCAATCTCGCCGCCAGGCAGGATGCGTTTACTTTGGACGTGTTTGAGGTGCCGCAGGGGTCTGGGTCCGGGTTTGTGTGGGATAAAGGTGGGAACATTGTCACCAATTACCACGTCATTCGCGGCGCTTCTGATCTCAGGGTCACTCTTGCTGACCAGTCAACTTTCGATGCAAAAGTTGTTGGATTTGACCAAGACAAGGATGTTGCGGTTTTACATGTTGATGCACCCAAAGACAAACTAAGGCCTATACCAATTGGTGTCTCTGCAGACTTGCTAGTTGGCCAGAAAGTGTTTGCTATCGGCAATCCTTTTGGACTTGACCATACCCTTACAACTGGTGTTATCAGTGGACTACGCAGAGAAATCAGTTCTGCTGCAACTGGTCGTCCAATCCAAGATGTTATACAGACAGATGCTGCCATTAACCCCGGTAATAGTGGGGGGCCACTTCTAGACAGTGCAGGGAGCCTTATCGGGATAAATACTGCAATATATTCTCCATCGGGTGCATCATCCGGTGTTGGGTTTTCTATTCCAGTTGATACTGTGAGTAGACATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0016787 GO:0017171 GO:0019538 GO:0019684 GO:0030091 GO:0030163 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

320

Amino Acids

33.92

Weight (kDa)

8.35

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	154 - 293	3.8e-35	Trypsin-like peptidase domain
Trypsin	PF00089	155 - 316	1.5e-18	Trypsin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27925 AT3G27925
fragaria_vesca	FvH4_6g50761
malus_domestica	MD09G1032500.v1.1 MD17G1034100.v1.1
prunus_persica	Prupe.3G285500_v2.0.a1
pyrus_communis	pycom111g02590 pycom17g03150
rosa_chinensis	RchiOBHm_Chr2g0171711
rosa_laevigata	RLG00000022031
rosa_multiflora	Rmu_co8512701.1_g000001 Rmu_ssc0000252.1_g000013
rosa_roxburghii	Rroxscaffold_2G00080500
rosa_rugosa	Rorug02G0555500 Rorug02G0555500
rosa_samantha	Rh2BG641100 Rh2BG643600 Rh2CG609300 Rh2DG652000 Rh2DG657300
rosa_wichuraiana	Rw2G052190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	2 cut(s)	291, 952
AccII	CGCG	1 cut(s)	519
AciI	CCGC	6 cut(s)	320, 358, 408, 449, 519, 605
AcoI	YGGCCR	1 cut(s)	679
AcyI	GRCGYC	1 cut(s)	288
AfiI	CCNNNNNNNGG	3 cut(s)	141, 595, 921
AflIII	ACRYGT	3 cut(s)	124, 435, 613
AjiI	CACGTC	2 cut(s)	436, 511
AjnI	CCWGG	2 cut(s)	366, 410
AjuI	GAANNNNNNNTTGG	4 cut(s)	100, 132, 197, 229
AluBI	AGCT	5 cut(s)	79, 190, 260, 331, 346
AluI	AGCT	5 cut(s)	79, 190, 260, 331, 346
Alw26I	GTCTC	3 cut(s)	150, 185, 664
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	4 cut(s)	297, 641, 679, 842
ApeKI	GCWGC	4 cut(s)	5, 331, 773, 815
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	462, 842
AsuC2I	CCSGG	2 cut(s)	466, 828
AsuHPI	GGTGA	4 cut(s)	73, 190, 388, 490
AvaII	GGWCC	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	318, 760, 802
BccI	CCATC	1 cut(s)	907
BciT130I	CCWGG	2 cut(s)	368, 412
BcnI	CCSGG	2 cut(s)	466, 828
BcoDI	GTCTC	3 cut(s)	150, 185, 664
BfaI	CTAG	3 cut(s)	257, 674, 851
BfmI	CTRYAG	3 cut(s)	157, 332, 663
BfoI	RGCGCY	1 cut(s)	525
BisI	GCNGC	9 cut(s)	6, 320, 332, 359, 408, 449, 520, 774, 816
BlsI	GCNGC	9 cut(s)	7, 321, 333, 360, 409, 450, 521, 775, 817
Bme1390I	CCNGG	4 cut(s)	368, 412, 466, 828
Bme18I	GGWCC	1 cut(s)	462
BmgBI	CACGTC	2 cut(s)	436, 511
BmgT120I	GGNCC	2 cut(s)	462, 842
BmiI	GGNNCC	4 cut(s)	447, 463, 843, 866
BmrFI	CCNGG	4 cut(s)	368, 412, 466, 828
BmsI	GCATC	5 cut(s)	409, 556, 610, 802, 917
BpiI	GAAGAC	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	466, 828
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	225, 826
BsaWI	WCCGGW	1 cut(s)	914
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 595, 921
Bse1I	ACTGG	4 cut(s)	553, 739, 784, 935
BseBI	CCWGG	2 cut(s)	368, 412
BseDI	CCNNGG	2 cut(s)	225, 826
BseGI	GGATG	4 cut(s)	346, 424, 604, 911
BseLI	CCNNNNNNNGG	3 cut(s)	141, 595, 921
BseMII	CTCAG	1 cut(s)	547
BseNI	ACTGG	4 cut(s)	553, 739, 784, 935
BseRI	GAGGAG	2 cut(s)	48, 185
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	318, 760, 802
BsgI	GTGCAG	2 cut(s)	232, 879
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	4 cut(s)	299, 643, 681, 844
BshNI	GGYRCC	1 cut(s)	445
BsiSI	CCGG	3 cut(s)	465, 828, 915
BslFI	GGGAC	2 cut(s)	250, 256
BslI	CCNNNNNNNGG	3 cut(s)	141, 595, 921
BsmAI	GTCTC	3 cut(s)	150, 185, 664
BsmFI	GGGAC	2 cut(s)	250, 256
BsnI	GGCC	4 cut(s)	299, 643, 681, 844
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	2 cut(s)	18, 529
BspACI	CCGC	6 cut(s)	320, 358, 408, 449, 519, 605
BspANI	GGCC	4 cut(s)	299, 643, 681, 844
BspCNI	CTCAG	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	4 cut(s)	447, 463, 843, 866
BspMAI	CTGCAG	3 cut(s)	161, 336, 667
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	150
BsrI	ACTGG	4 cut(s)	553, 739, 784, 935
BssECI	CCNNGG	2 cut(s)	225, 826
BssMI	GATC	2 cut(s)	18, 529
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	368, 412
Bst4CI	ACNGT	4 cut(s)	144, 355, 857, 946
Bst6I	CTCTTC	2 cut(s)	41, 46
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	533, 638
BstF5I	GGATG	4 cut(s)	346, 424, 604, 911
BstFNI	CGCG	1 cut(s)	519
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	2 cut(s)	21, 532
BstMAI	GTCTC	3 cut(s)	150, 185, 664
BstMBI	GATC	2 cut(s)	18, 529
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	2 cut(s)	368, 412
BstNSI	RCATGY	2 cut(s)	128, 617
BstSCI	CCNGG	4 cut(s)	366, 410, 464, 826
BstSFI	CTRYAG	3 cut(s)	157, 332, 663
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	318, 760, 802
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	299, 643, 681, 844
BtrI	CACGTC	2 cut(s)	436, 511
BtsCI	GGATG	4 cut(s)	346, 424, 604, 911
BtsIMutI	CAGTG	2 cut(s)	751, 862
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	815
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	462, 842
CviAII	CATG	2 cut(s)	125, 614
DdeI	CTNAG	2 cut(s)	533, 638
DpnI	GATC	2 cut(s)	20, 531
DpnII	GATC	2 cut(s)	18, 529
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	41, 46
EarI	CTCTTC	2 cut(s)	41, 46
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	643
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	462
EcoRII	CCWGG	2 cut(s)	366, 410
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	128, 617
FaiI	YATR	6 cut(s)	126, 615, 647, 723, 803, 892
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	2 cut(s)	250, 256
FatI	CATG	2 cut(s)	124, 613
FblI	GTMKAC	2 cut(s)	291, 952
Fnu4HI	GCNGC	9 cut(s)	6, 320, 332, 359, 408, 449, 520, 774, 816
FokI	GGATG	4 cut(s)	353, 431, 611, 898
Fsp4HI	GCNGC	9 cut(s)	6, 320, 332, 359, 408, 449, 520, 774, 816
FspBI	CTAG	3 cut(s)	257, 674, 851
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	9 cut(s)	6, 320, 332, 359, 408, 449, 520, 774, 816
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	299, 643, 681, 844
HapII	CCGG	3 cut(s)	465, 828, 915
HhaI	GCGC	1 cut(s)	524
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	128, 617
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HincII	GTYRAC	2 cut(s)	292, 558
HindII	GTYRAC	2 cut(s)	292, 558
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	3 cut(s)	208, 230, 293
HpaII	CCGG	3 cut(s)	465, 828, 915
HphI	GGTGA	4 cut(s)	73, 190, 388, 490
Hpy166II	GTNNAC	6 cut(s)	292, 391, 426, 558, 749, 953
Hpy188I	TCNGA	2 cut(s)	74, 529
Hpy188III	TCNNGA	2 cut(s)	851, 874
Hpy8I	GTNNAC	6 cut(s)	292, 391, 426, 558, 749, 953
Hpy99I	CGWCG	3 cut(s)	284, 290, 293
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	4 cut(s)	144, 355, 857, 946
HpyCH4IV	ACGT	3 cut(s)	288, 435, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	2 cut(s)	533, 638
HpySE526I	ACGT	3 cut(s)	288, 435, 510
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	2 cut(s)	128, 617
HspAI	GCGC	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	18, 529
LmnI	GCTCC	2 cut(s)	68, 864
Lsp1109I	GCAGC	3 cut(s)	318, 760, 802
LweI	GCATC	5 cut(s)	409, 556, 610, 802, 917
MaeI	CTAG	3 cut(s)	257, 674, 851
MaeII	ACGT	3 cut(s)	288, 435, 510
MaeIII	GTNAC	3 cut(s)	313, 496, 538
MalI	GATC	2 cut(s)	20, 531
MboI	GATC	2 cut(s)	18, 529
MboII	GAAGA	5 cut(s)	3, 28, 33, 108, 111
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	2 cut(s)	502, 651
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	2 cut(s)	224, 287
MmeI	TCCRAC	1 cut(s)	559
Mox20I	TGGCCA	1 cut(s)	681
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	1 cut(s)	822
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	681
MspI	CCGG	3 cut(s)	465, 828, 915
MspR9I	CCNGG	4 cut(s)	368, 412, 466, 828
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	2 cut(s)	368, 412
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	328
NciI	CCSGG	2 cut(s)	466, 828
NdeII	GATC	2 cut(s)	18, 529
NlaIII	CATG	2 cut(s)	128, 617
NlaIV	GGNNCC	4 cut(s)	447, 463, 843, 866
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	3 cut(s)	313, 496, 538
NspI	RCATGY	2 cut(s)	128, 617
PceI	AGGCCT	1 cut(s)	643
PciI	ACATGT	2 cut(s)	124, 613
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 288
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	9 cut(s)	7, 321, 333, 360, 409, 450, 521, 775, 817
PleI	GAGTC	2 cut(s)	224, 287
PpsI	GAGTC	2 cut(s)	224, 287
PscI	ACATGT	2 cut(s)	124, 613
Psp6I	CCWGG	2 cut(s)	366, 410
PspGI	CCWGG	2 cut(s)	366, 410
PspN4I	GGNNCC	4 cut(s)	447, 463, 843, 866
PspPI	GGNCC	2 cut(s)	462, 842
PstI	CTGCAG	3 cut(s)	161, 336, 667
PstNI	CAGNNNCTG	1 cut(s)	815
RseI	CAYNNNNRTG	1 cut(s)	618
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	822
SatI	GCNGC	9 cut(s)	6, 320, 332, 359, 408, 449, 520, 774, 816
Sau3AI	GATC	2 cut(s)	18, 529
Sau96I	GGNCC	2 cut(s)	462, 842
SchI	GAGTC	2 cut(s)	224, 287
ScrFI	CCNGG	4 cut(s)	368, 412, 466, 828
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	5 cut(s)	409, 556, 610, 802, 917
SfcI	CTRYAG	3 cut(s)	157, 332, 663
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	618
Sse9I	AATT	2 cut(s)	502, 651
SseBI	AGGCCT	1 cut(s)	643
SsiI	CCGC	6 cut(s)	320, 358, 408, 449, 519, 605
SspMI	CTAG	3 cut(s)	257, 674, 851
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	4 cut(s)	366, 410, 464, 826
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	4 cut(s)	144, 355, 857, 946
TaiI	ACGT	3 cut(s)	291, 438, 513
TaqI	TCGA	2 cut(s)	291, 564
TasI	AATT	2 cut(s)	502, 651
TauI	GCSGC	5 cut(s)	322, 361, 410, 451, 522
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	822
Tru9I	TTAA	1 cut(s)	822
TscAI	CASTG	2 cut(s)	751, 862
TseFI	GTSAC	3 cut(s)	313, 496, 538
TseI	GCWGC	4 cut(s)	5, 331, 773, 815
Tsp45I	GTSAC	3 cut(s)	313, 496, 538
TspGWI	ACGGA	2 cut(s)	165, 353
TspRI	CASTG	2 cut(s)	751, 862
VpaK11BI	GGWCC	1 cut(s)	462
XbaI	TCTAGA	1 cut(s)	850
XceI	RCATGY	2 cut(s)	128, 617
XmiI	GTMKAC	2 cut(s)	291, 952
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	3 cut(s)	257, 674, 851
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.