pycom111g02590

Protease Do-like 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
1559031 .. 1562049
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g02590.3

Sequence Viewer

Length: 1287 bp
ATGGCTGCTTCTTCACTGATTTCCACACACTTCCACTCTTCCTCCCCAACTTTCTCACCACTTTCTCGCTCCCCAAACAGAAAGTTCCTTTCTTTCCCTCTCTCCAAATCCTTTTCCCTCCCCAAACCCGCAGCCTCAACCTCCCCCATCCTCTCCCTCCACCGCAAATCCCAGAAGCGGTCTCTGATCCCGCCGTACAAGTCCTACTGTCACCCGTGCCTCCACAAGCTTCTGCTCGCCACCAAGAACCCCTTCTTCTCGGGTCTCGAATCTCTGCTCATTCTTTGCGCTTCGGCGGCTCTGTCGCTTTCCCTGTTCATCGCCGATGTGGATCCCGCCTCCGCTTTCGTCGTCACTCCGCCGAGGAAGCTGCAGTCCGATGAGCTCGCCACGGATGCGTTTACTTTGGACGTGTTTGAGGTGCCGCAGGGGTCTGGATCAGGCTTCGTGTGGGATAAAAACGGCAATGTTGTCACCAATTACCACGTGATTCGCGGCGCTTCTGATCTCAGGGTCACGCTTGGTGATCAGTCAACTTTTAATGCCAAGGTTGTTGGATTTGACCAAGACAAGGATGTTGCTGTTCTACATGTTGATGCTCCCAAAGAGAAACTAAGGCCTATACCAATTGGTCAATCTGCAGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATCGGCAATCCTTTTGGGCTTGATCATACTCTTACCACTGGCGTTATCAGTGGGCTTCGTAGAGAAATTAGTTCTGCTGCTACTGGCCGTCCAATTCAAGATGTTATACAGATAGATGCTGCCATTAATCCTGGTAATAGTGGGGGGCCACTTCTAGATAGTACAGGAAGCCTTATCGGGATAAACACAGCTATATATTCTCCAAACGGTGCATCATCCGGTGTTGGATTTTCAATTCCAGTTGACACGGTAAATGGTATTGTTGACCAATTGGTCAAATTTGGGAAGGTCACGAGACCTATTTTAGGGATTAAGTTTGCACCTGATCAATCTGTTGAACAGTTGGGGTTAAGTGGTGTGCTTGTCTTAGACGCACCAGCTAACGGTCCAGCTGGCAAAGCGGGACTGGTACCAACCAAGCGCGACGCCTATGGTAGACTCATATTGGGTGACATTATAACATCTGTGAATGCAAAAAAGGTCAGCAATGGCAGCGACTTGTATAGAATTCTCGATCAGTGTAAAGTGGGCGATCAGGTGATTGTGGAAGTGTTGCGCGGTGATCAGAAGGAGAAAATCCCTGTTGTGCTTGAATCAAAGGCCGACGAGACATGA

Protein Analysis

429

Amino Acids

45.28

Weight (kDa)

8.73

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1130
AasI GACNNNNNNGTC 1 cut(s) 944
Acc65I GGTACC 1 cut(s) 1081
AccB1I GGYRCC 2 cut(s) 421, 1081
AccI GTMKAC 1 cut(s) 1108
AccII CGCG 3 cut(s) 495, 1095, 1230
AclWI GGATC 4 cut(s) 181, 326, 339, 445
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 2 cut(s) 950, 1179
AcvI CACGTG 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 1098
AfaI GTAC 3 cut(s) 197, 835, 1083
AfiI CCNNNNNNNGG 4 cut(s) 177, 571, 977, 1055
AflIII ACRYGT 2 cut(s) 411, 589
AgsI TTSAA 4 cut(s) 770, 906, 1010, 1265
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 802
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 6 cut(s) 229, 370, 385, 863, 1052, 1064
AluI AGCT 6 cut(s) 229, 370, 385, 863, 1052, 1064
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 4 cut(s) 186, 269, 961, 1274
AlwI GGATC 4 cut(s) 181, 326, 339, 445
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 4 cut(s) 617, 757, 818, 1272
ApeKI GCWGC 6 cut(s) 5, 131, 370, 749, 791, 1164
ApoI RAATTY 2 cut(s) 950, 1179
AseI ATTAAT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 1081
AspLEI GCGC 4 cut(s) 290, 500, 1095, 1230
AspS9I GGNCC 2 cut(s) 818, 1058
AsuHPI GGTGA 7 cut(s) 48, 203, 466, 536, 1133, 1222, 1244
AvaI CYCGRG 1 cut(s) 259
AvaII GGWCC 1 cut(s) 1058
BamHI GGATCC 1 cut(s) 331
BanI GGYRCC 2 cut(s) 421, 1081
BanII GRGCYC 1 cut(s) 387
BauI CACGAG 1 cut(s) 964
BbrPI CACGTG 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 5 cut(s) 143, 357, 736, 778, 1176
BccI CCATC 1 cut(s) 155
BceAI ACGGC 3 cut(s) 178, 478, 744
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciT130I CCWGG 1 cut(s) 804
BclI TGATCA 4 cut(s) 526, 694, 997, 1234
BcoDI GTCTC 4 cut(s) 186, 269, 961, 1274
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 2 cut(s) 371, 639
BfoI RGCGCY 1 cut(s) 501
BisI GCNGC 9 cut(s) 6, 132, 297, 371, 425, 496, 750, 792, 1165
BlsI GCNGC 9 cut(s) 7, 133, 298, 372, 426, 497, 751, 793, 1166
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 1 cut(s) 1058
BmeT110I CYCGRG 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 2 cut(s) 818, 1058
BmiI GGNNCC 4 cut(s) 333, 423, 819, 1083
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 4 cut(s) 385, 586, 778, 893
BsaAI YACGTR 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 1098
BsaI GGTCTC 3 cut(s) 186, 269, 961
BsaJI CCNNGG 3 cut(s) 362, 390, 546
BsaWI WCCGGW 1 cut(s) 890
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 571, 977, 1055
Bse1I ACTGG 4 cut(s) 715, 760, 911, 1083
Bse3DI GCAATG 2 cut(s) 472, 1165
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 3 cut(s) 362, 390, 546
BseGI GGATG 4 cut(s) 147, 400, 580, 887
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 4 cut(s) 177, 571, 977, 1055
BseMI GCAATG 2 cut(s) 472, 1165
BseMII CTCAG 1 cut(s) 523
BseNI ACTGG 4 cut(s) 715, 760, 911, 1083
BseXI GCAGC 5 cut(s) 143, 357, 736, 778, 1176
Bsh1236I CGCG 3 cut(s) 495, 1095, 1230
BshFI GGCC 4 cut(s) 619, 759, 820, 1274
BshNI GGYRCC 2 cut(s) 421, 1081
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 891
BslFI GGGAC 1 cut(s) 1089
BslI CCNNNNNNNGG 4 cut(s) 177, 571, 977, 1055
BsmAI GTCTC 4 cut(s) 186, 269, 961, 1274
BsmFI GGGAC 1 cut(s) 1089
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 4 cut(s) 619, 759, 820, 1274
Bso31I GGTCTC 3 cut(s) 186, 269, 961
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 387
BspANI GGCC 4 cut(s) 619, 759, 820, 1274
BspCNI CTCAG 1 cut(s) 522
BspFNI CGCG 3 cut(s) 495, 1095, 1230
BspLI GGNNCC 4 cut(s) 333, 423, 819, 1083
BspMAI CTGCAG 2 cut(s) 375, 643
BspPI GGATC 4 cut(s) 181, 326, 339, 445
BspT107I GGYRCC 2 cut(s) 421, 1081
BspTNI GGTCTC 3 cut(s) 186, 269, 961
BsrDI GCAATG 2 cut(s) 472, 1165
BsrI ACTGG 4 cut(s) 715, 760, 911, 1083
BssECI CCNNGG 3 cut(s) 362, 390, 546
BssNI GRCGYC 1 cut(s) 1098
BssSI CACGAG 1 cut(s) 964
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 964
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 5 cut(s) 209, 881, 922, 1014, 1058
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 1098
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 237, 387, 1066
BstDEI CTNAG 3 cut(s) 509, 614, 1039
BstDSI CCRYGG 1 cut(s) 390
BstENI CCTNNNNNAGG 1 cut(s) 975
BstF5I GGATG 4 cut(s) 147, 400, 580, 887
BstFNI CGCG 3 cut(s) 495, 1095, 1230
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 4 cut(s) 290, 500, 1095, 1230
BstMAI GTCTC 4 cut(s) 186, 269, 961, 1274
BstMWI GCNNNNNNNGC 5 cut(s) 296, 367, 395, 1070, 1164
BstNI CCWGG 1 cut(s) 804
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 2 cut(s) 371, 639
BstUI CGCG 3 cut(s) 495, 1095, 1230
BstV1I GCAGC 5 cut(s) 143, 357, 736, 778, 1176
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 4 cut(s) 619, 759, 820, 1274
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 304
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 147, 400, 580, 887
BtsIMutI CAGTG 4 cut(s) 14, 708, 727, 1196
Cac8I GCNNGC 3 cut(s) 237, 387, 1066
CfoI GCGC 4 cut(s) 290, 500, 1095, 1230
Cfr13I GGNCC 2 cut(s) 818, 1058
CseI GACGC 2 cut(s) 1052, 1106
Csp6I GTAC 3 cut(s) 196, 834, 1082
CviAII CATG 2 cut(s) 590, 1284
CviQI GTAC 3 cut(s) 196, 834, 1082
DdeI CTNAG 3 cut(s) 509, 614, 1039
DrdI GACNNNNNNGTC 1 cut(s) 944
DseDI GACNNNNNNGTC 1 cut(s) 944
EaeI YGGCCR 1 cut(s) 757
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 3 cut(s) 186, 269, 961
Eco47I GGWCC 1 cut(s) 1058
Eco53kI GAGCTC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 385
EcoNI CCTNNNNNAGG 1 cut(s) 975
EcoRI GAATTC 1 cut(s) 1179
EcoRII CCWGG 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 2 cut(s) 593, 1287
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 1089
FatI CATG 2 cut(s) 589, 1283
FauI CCCGC 4 cut(s) 136, 198, 343, 1066
FbaI TGATCA 4 cut(s) 526, 694, 997, 1234
FblI GTMKAC 1 cut(s) 1108
Fnu4HI GCNGC 9 cut(s) 6, 132, 297, 371, 425, 496, 750, 792, 1165
FokI GGATG 4 cut(s) 134, 407, 587, 874
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 9 cut(s) 6, 132, 297, 371, 425, 496, 750, 792, 1165
FspBI CTAG 1 cut(s) 827
GlaI GCGC 4 cut(s) 289, 499, 1094, 1229
GluI GCNGC 9 cut(s) 6, 132, 297, 371, 425, 496, 750, 792, 1165
HaeII RGCGCY 1 cut(s) 501
HaeIII GGCC 4 cut(s) 619, 759, 820, 1274
HapII CCGG 1 cut(s) 891
HgaI GACGC 2 cut(s) 1052, 1106
HhaI GCGC 4 cut(s) 290, 500, 1095, 1230
Hin1I GRCGYC 1 cut(s) 1098
Hin1II CATG 2 cut(s) 593, 1287
Hin6I GCGC 4 cut(s) 288, 498, 1093, 1228
HinP1I GCGC 4 cut(s) 288, 498, 1093, 1228
HincII GTYRAC 3 cut(s) 534, 916, 937
HindII GTYRAC 3 cut(s) 534, 916, 937
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 4 cut(s) 269, 490, 1110, 1265
HpaII CCGG 1 cut(s) 891
HphI GGTGA 7 cut(s) 48, 203, 466, 536, 1133, 1222, 1244
Hpy166II GTNNAC 5 cut(s) 402, 534, 916, 937, 1109
Hpy188I TCNGA 5 cut(s) 186, 379, 505, 660, 1239
Hpy188III TCNNGA 7 cut(s) 266, 435, 770, 827, 850, 964, 1184
Hpy8I GTNNAC 5 cut(s) 402, 534, 916, 937, 1109
Hpy99I CGWCG 3 cut(s) 353, 1100, 1280
HpyAV CCTTC 3 cut(s) 262, 952, 1234
HpyCH4III ACNGT 5 cut(s) 209, 881, 922, 1014, 1058
HpyCH4IV ACGT 2 cut(s) 411, 486
HpyCH4V TGCA 5 cut(s) 373, 641, 884, 992, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 367, 395, 1070, 1164
HpyF3I CTNAG 3 cut(s) 509, 614, 1039
HpySE526I ACGT 2 cut(s) 411, 486
Hsp92I GRCGYC 1 cut(s) 1098
Hsp92II CATG 2 cut(s) 593, 1287
HspAI GCGC 4 cut(s) 288, 498, 1093, 1228
KpnI GGTACC 1 cut(s) 1085
Ksp22I TGATCA 4 cut(s) 526, 694, 997, 1234
LmnI GCTCC 2 cut(s) 74, 604
Lsp1109I GCAGC 5 cut(s) 143, 357, 736, 778, 1176
LweI GCATC 4 cut(s) 385, 586, 778, 893
MaeI CTAG 1 cut(s) 827
MaeII ACGT 2 cut(s) 411, 486
MaeIII GTNAC 6 cut(s) 209, 352, 472, 514, 961, 1121
MboII GAAGA 3 cut(s) 3, 30, 247
MfeI CAATTG 2 cut(s) 627, 941
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 8 cut(s) 478, 627, 738, 765, 906, 941, 950, 1179
MlyI GAGTC 1 cut(s) 1104
MmeI TCCRAC 2 cut(s) 535, 877
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 4 cut(s) 540, 798, 984, 1022
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 1 cut(s) 891
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 2 cut(s) 627, 941
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 1 cut(s) 804
MvnI CGCG 3 cut(s) 495, 1095, 1230
MwoI GCNNNNNNNGC 5 cut(s) 296, 367, 395, 1070, 1164
NlaIII CATG 2 cut(s) 593, 1287
NlaIV GGNNCC 4 cut(s) 333, 423, 819, 1083
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 6 cut(s) 209, 352, 472, 514, 961, 1121
NspI RCATGY 1 cut(s) 593
PceI AGGCCT 1 cut(s) 619
PciI ACATGT 1 cut(s) 589
PctI GAATGC 1 cut(s) 1147
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 269, 490, 1265
PkrI GCNGC 9 cut(s) 7, 133, 298, 372, 426, 497, 751, 793, 1166
PleI GAGTC 1 cut(s) 1104
PmaCI CACGTG 1 cut(s) 487
PmlI CACGTG 1 cut(s) 487
PpsI GAGTC 1 cut(s) 1104
Ppu21I YACGTR 1 cut(s) 487
PscI ACATGT 1 cut(s) 589
PshBI ATTAAT 1 cut(s) 798
PsiI TTATAA 1 cut(s) 1130
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 802
PspCI CACGTG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 802
PspN4I GGNNCC 4 cut(s) 333, 423, 819, 1083
PspPI GGNCC 2 cut(s) 818, 1058
PstI CTGCAG 2 cut(s) 375, 643
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 3 cut(s) 197, 835, 1083
RsaNI GTAC 3 cut(s) 196, 834, 1082
RseI CAYNNNNRTG 1 cut(s) 594
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 4 cut(s) 540, 798, 984, 1022
SatI GCNGC 9 cut(s) 6, 132, 297, 371, 425, 496, 750, 792, 1165
Sau96I GGNCC 2 cut(s) 818, 1058
SchI GAGTC 1 cut(s) 1104
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 4 cut(s) 385, 586, 778, 893
SfcI CTRYAG 2 cut(s) 371, 639
SinI GGWCC 1 cut(s) 1058
SmiMI CAYNNNNRTG 1 cut(s) 594
Sse9I AATT 8 cut(s) 478, 627, 738, 765, 906, 941, 950, 1179
SseBI AGGCCT 1 cut(s) 619
SspMI CTAG 1 cut(s) 827
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 1 cut(s) 619
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 5 cut(s) 209, 881, 922, 1014, 1058
TaiI ACGT 2 cut(s) 414, 489
TaqI TCGA 2 cut(s) 267, 1185
TasI AATT 8 cut(s) 478, 627, 738, 765, 906, 941, 950, 1179
TatI WGTACW 1 cut(s) 833
TauI GCSGC 3 cut(s) 299, 427, 498
TfiI GAWTC 3 cut(s) 269, 490, 1265
Tru1I TTAA 4 cut(s) 540, 798, 984, 1022
Tru9I TTAA 4 cut(s) 540, 798, 984, 1022
TscAI CASTG 4 cut(s) 21, 715, 727, 1196
TseFI GTSAC 6 cut(s) 209, 352, 472, 514, 961, 1121
TseI GCWGC 6 cut(s) 5, 131, 370, 749, 791, 1164
Tsp45I GTSAC 6 cut(s) 209, 352, 472, 514, 961, 1121
TspDTI ATGAA 1 cut(s) 307
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 4 cut(s) 21, 715, 727, 1196
VpaK11BI GGWCC 1 cut(s) 1058
VspI ATTAAT 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 975
XapI RAATTY 2 cut(s) 950, 1179
XbaI TCTAGA 1 cut(s) 826
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 1108
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.