Prupe.3G285500_v2.0.a1

Protease Do-like 1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
25833058 .. 25836981
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G285500.2

Sequence Viewer

Length: 1359 bp
ATGGCTGCTTCTTCACTCATTTCCACAAACTTCCGCTCTTCCCCAACTTTCTCTCCCGTTCCCTTGTTTTCTCGCTTTCCAAACAGAAAGCTCATTACTTTTCCTCTCTCCAAATCCATTTCCCTCCACAAATCCCCCAGCTCAACAGGCTCACCTATCCTCTCCCTTCTTCACCACAAAACCCAGAAAAGGTCTTTGATCCCGTACAAGACTTACTGTCCTCCATGCCTCCACAAGCTTCTGCTTACCACCAAGAACCCCTTCTCGACCGCCTTGGATTCTCTGCTCATTCTCTGCACTTCGGTAGCTCTAGCTTTGTCCCTCTTCATCGCCGATGTGGATCCGGCCTCGGCTTTCGTGGTCACTCCTCCGAGAAAGTTGCAATCCGATGAGCTCGCTACGGTTCAGCTCTTTCAGGAGAACACTCCCTCAGTTGTTTACATCACCAATCTTGCAGCCAGGCAGGATGCGTTTACTTTGGACGTGTTTGAGGTACCGCAGGGGTCTGGGTCAGGCTTTGTGTGGGATAAAGACGGTCACGTTGTCACCAATTACCACGTGATTCGTGGTGCTTCTGATCTCAGGGTCACACTTGCTGACCAGTCAACTTTTGATGCAAAAGTTGTTGGATTTGACCAAGACAAGGATGTTGCTGTTTTACATGTTGATGCACCCAAAGACAAACTAAGGCCTATACCTATTGGTGTCTCTGCAGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGCAATCCTTTTGGGCTTGACCATACTCTTACAACTGGTGTTATCAGTGGGCTTCGCAGAGAAATTAGTTCTGCTGCTACTGGCCGTCCAATTCAAGATGTTATACAGACAGATGCTGCCATTAATCCTGGTAATAGTGGGGGCCCACTTCTAGATAGCACAGGAAGCCTTATCGGGATAAATACGGCTATATATTCACCTTCTGGTGCATCATCAGGTGTTGGATTTTCAATTCCAGTTGACACTGTAAATGGTATTGTTGACCAGTTGGTCAGATTTGGGAAGGTCACTAGACCTGTTTTAGGAATTAAGTTTGCACCTGATCAATCTGTTGAACAGTTGGGGGTTAGTGGAGTGCTTGTCTTAGACGCACCAGCAAATGGTCCAGCTGGCAAAGCGGGACTGCTACCAACCAAGCGTGATGCCTATGGCAGACTCATCTTGGGTGACATTATAACATCTGTGAATGGTAAAAAGGTCAGCAATGGCAGCGACTTGTATAGAATTCTCGACCAATGTAAAGTGGGTGATAAGGTGACTGTGGAGGTGTTGCGTGGTGATAAAAAGGAGAAGATCCCTGTTGTACTTGAACCAAAGGCTGACGAGACATGA

Protein Analysis

453

Amino Acids

48.01

Weight (kDa)

8.71

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1202
AasI GACNNNNNNGTC 1 cut(s) 1016
Acc65I GGTACC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccBSI CCGCTC 1 cut(s) 36
AciI CCGC 4 cut(s) 34, 270, 497, 1145
AclWI GGATC 4 cut(s) 193, 335, 348, 1315
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 1 cut(s) 1251
AcvI CACGTG 1 cut(s) 559
AfaI GTAC 3 cut(s) 206, 495, 1332
AfiI CCNNNNNNNGG 4 cut(s) 189, 643, 1049, 1127
AflIII ACRYGT 2 cut(s) 483, 661
AgsI TTSAA 4 cut(s) 842, 978, 1082, 1337
AhdI GACNNNNNGTC 1 cut(s) 216
AjiI CACGTC 1 cut(s) 484
AjnI CCWGG 2 cut(s) 458, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 8 cut(s) 91, 141, 238, 308, 314, 394, 409, 1136
AluI AGCT 8 cut(s) 91, 141, 238, 308, 314, 394, 409, 1136
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 2 cut(s) 712, 1346
AlwI GGATC 4 cut(s) 193, 335, 348, 1315
AlwNI CAGNNNCTG 1 cut(s) 863
AoxI GGCC 4 cut(s) 345, 689, 829, 889
ApaI GGGCCC 1 cut(s) 893
ApeKI GCWGC 5 cut(s) 5, 455, 821, 863, 1236
ApoI RAATTY 1 cut(s) 1251
AseI ATTAAT 1 cut(s) 870
Asp700I GAANNNNTTC 1 cut(s) 260
Asp718I GGTACC 1 cut(s) 493
AspS9I GGNCC 3 cut(s) 889, 890, 1130
AsuHPI GGTGA 9 cut(s) 144, 164, 436, 538, 936, 1205, 1286, 1294, 1316
AvaII GGWCC 1 cut(s) 1130
BaeGI GKGCMC 1 cut(s) 893
BamHI GGATCC 1 cut(s) 340
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 2 cut(s) 396, 893
BbrPI CACGTG 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 467, 808, 850, 1248
BceAI ACGGC 2 cut(s) 816, 948
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BciT130I CCWGG 2 cut(s) 460, 876
BclI TGATCA 1 cut(s) 1069
BcoDI GTCTC 2 cut(s) 712, 1346
BfaI CTAG 3 cut(s) 311, 899, 1038
BfmI CTRYAG 1 cut(s) 711
BisI GCNGC 5 cut(s) 6, 456, 822, 864, 1237
BlsI GCNGC 5 cut(s) 7, 457, 823, 865, 1238
Bme1390I CCNGG 2 cut(s) 460, 876
Bme18I GGWCC 1 cut(s) 1130
BmeRI GACNNNNNGTC 1 cut(s) 216
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 3 cut(s) 889, 890, 1130
BmiI GGNNCC 4 cut(s) 342, 495, 890, 891
BmrFI CCNGG 2 cut(s) 460, 876
BmsI GCATC 6 cut(s) 457, 604, 658, 850, 965, 1159
BsaAI YACGTR 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 273, 348
BsaXI ACNNNNNCTCC 4 cut(s) 37, 67, 1092, 1122
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 643, 1049, 1127
Bse1I ACTGG 5 cut(s) 601, 787, 832, 983, 1012
Bse3DI GCAATG 1 cut(s) 1237
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 2 cut(s) 460, 876
BseDI CCNNGG 2 cut(s) 273, 348
BseGI GGATG 2 cut(s) 472, 652
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 4 cut(s) 189, 643, 1049, 1127
BseMI GCAATG 1 cut(s) 1237
BseMII CTCAG 2 cut(s) 444, 595
BseNI ACTGG 5 cut(s) 601, 787, 832, 983, 1012
BseRI GAGGAG 1 cut(s) 357
BseSI GKGCMC 1 cut(s) 893
BseXI GCAGC 4 cut(s) 467, 808, 850, 1248
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 280
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 347, 691, 831, 891
BshNI GGYRCC 1 cut(s) 493
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 396
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 2 cut(s) 304, 1161
BslI CCNNNNNNNGG 4 cut(s) 189, 643, 1049, 1127
BsmAI GTCTC 2 cut(s) 712, 1346
BsmFI GGGAC 2 cut(s) 304, 1161
BsnI GGCC 4 cut(s) 347, 691, 831, 891
Bsp120I GGGCCC 1 cut(s) 889
Bsp1286I GDGCHC 2 cut(s) 396, 893
Bsp143I GATC 5 cut(s) 198, 340, 577, 1069, 1320
BspACI CCGC 4 cut(s) 34, 270, 497, 1145
BspANI GGCC 4 cut(s) 347, 691, 831, 891
BspCNI CTCAG 2 cut(s) 443, 594
BspLI GGNNCC 4 cut(s) 342, 495, 890, 891
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 4 cut(s) 193, 335, 348, 1315
BspQI GCTCTTC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 1237
BsrI ACTGG 5 cut(s) 601, 787, 832, 983, 1012
BssECI CCNNGG 2 cut(s) 273, 348
BssMI GATC 5 cut(s) 198, 340, 577, 1069, 1320
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 460, 876
Bst4CI ACNGT 6 cut(s) 218, 403, 536, 994, 1086, 1288
Bst6I CTCTTC 2 cut(s) 43, 329
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 396, 1138
BstDEI CTNAG 4 cut(s) 430, 581, 686, 1111
BstENI CCTNNNNNAGG 1 cut(s) 1047
BstF5I GGATG 2 cut(s) 472, 652
BstKTI GATC 5 cut(s) 201, 343, 580, 1072, 1323
BstMAI GTCTC 2 cut(s) 712, 1346
BstMBI GATC 5 cut(s) 198, 340, 577, 1069, 1320
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 4 cut(s) 147, 912, 1142, 1236
BstNI CCWGG 2 cut(s) 460, 876
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 2 cut(s) 458, 874
BstSFI CTRYAG 1 cut(s) 711
BstSLI GKGCMC 1 cut(s) 893
BstV1I GCAGC 4 cut(s) 467, 808, 850, 1248
BstX2I RGATCY 2 cut(s) 340, 1320
BstYI RGATCY 2 cut(s) 340, 1320
BsuRI GGCC 4 cut(s) 347, 691, 831, 891
BtgZI GCGATG 1 cut(s) 313
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 2 cut(s) 472, 652
BtsIMutI CAGTG 2 cut(s) 799, 990
Cac8I GCNNGC 2 cut(s) 396, 1138
CaiI CAGNNNCTG 1 cut(s) 863
Cfr13I GGNCC 3 cut(s) 889, 890, 1130
CseI GACGC 1 cut(s) 1124
Csp6I GTAC 3 cut(s) 205, 494, 1331
CviAII CATG 3 cut(s) 225, 662, 1356
CviQI GTAC 3 cut(s) 205, 494, 1331
DdeI CTNAG 4 cut(s) 430, 581, 686, 1111
DpnI GATC 5 cut(s) 200, 342, 579, 1071, 1322
DpnII GATC 5 cut(s) 198, 340, 577, 1069, 1320
DrdI GACNNNNNNGTC 1 cut(s) 1016
DriI GACNNNNNGTC 1 cut(s) 216
DseDI GACNNNNNNGTC 1 cut(s) 1016
EaeI YGGCCR 1 cut(s) 829
Eam1104I CTCTTC 2 cut(s) 43, 329
Eam1105I GACNNNNNGTC 1 cut(s) 216
EarI CTCTTC 2 cut(s) 43, 329
Ecl136II GAGCTC 1 cut(s) 394
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 396, 893
Eco47I GGWCC 1 cut(s) 1130
Eco53kI GAGCTC 1 cut(s) 394
Eco72I CACGTG 1 cut(s) 559
EcoICRI GAGCTC 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 1047
EcoO109I RGGNCCY 1 cut(s) 889
EcoRI GAATTC 1 cut(s) 1251
EcoRII CCWGG 2 cut(s) 458, 874
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 2 cut(s) 396, 893
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 228, 665, 1359
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 2 cut(s) 304, 1161
FatI CATG 3 cut(s) 224, 661, 1355
FauI CCCGC 1 cut(s) 1138
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 5 cut(s) 6, 456, 822, 864, 1237
FokI GGATG 2 cut(s) 479, 659
FriOI GRGCYC 2 cut(s) 396, 893
Fsp4HI GCNGC 5 cut(s) 6, 456, 822, 864, 1237
FspBI CTAG 3 cut(s) 311, 899, 1038
GluI GCNGC 5 cut(s) 6, 456, 822, 864, 1237
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 4 cut(s) 347, 691, 831, 891
HapII CCGG 1 cut(s) 344
HgaI GACGC 1 cut(s) 1124
Hin1II CATG 3 cut(s) 228, 665, 1359
HincII GTYRAC 3 cut(s) 606, 988, 1009
HindII GTYRAC 3 cut(s) 606, 988, 1009
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 3 cut(s) 278, 562, 1182
HpaII CCGG 1 cut(s) 344
HphI GGTGA 9 cut(s) 144, 164, 436, 538, 936, 1205, 1286, 1294, 1316
Hpy166II GTNNAC 5 cut(s) 439, 474, 606, 988, 1009
Hpy188I TCNGA 5 cut(s) 372, 388, 577, 732, 1022
Hpy188III TCNNGA 6 cut(s) 265, 416, 842, 899, 922, 1256
Hpy8I GTNNAC 5 cut(s) 439, 474, 606, 988, 1009
HpyAV CCTTC 4 cut(s) 176, 271, 957, 1024
HpyCH4III ACNGT 6 cut(s) 218, 403, 536, 994, 1086, 1288
HpyCH4IV ACGT 3 cut(s) 483, 540, 558
HpyCH4V TGCA 8 cut(s) 297, 382, 455, 617, 671, 713, 956, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 912, 1142, 1236
HpyF3I CTNAG 4 cut(s) 430, 581, 686, 1111
HpySE526I ACGT 3 cut(s) 483, 540, 558
Hsp92II CATG 3 cut(s) 228, 665, 1359
KpnI GGTACC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 5 cut(s) 198, 340, 577, 1069, 1320
LguI GCTCTTC 1 cut(s) 43
Lsp1109I GCAGC 4 cut(s) 467, 808, 850, 1248
LweI GCATC 6 cut(s) 457, 604, 658, 850, 965, 1159
MaeI CTAG 3 cut(s) 311, 899, 1038
MaeII ACGT 3 cut(s) 483, 540, 558
MaeIII GTNAC 7 cut(s) 361, 536, 544, 586, 1033, 1193, 1282
MalI GATC 5 cut(s) 200, 342, 579, 1071, 1322
MbiI CCGCTC 1 cut(s) 36
MboI GATC 5 cut(s) 198, 340, 577, 1069, 1320
MboII GAAGA 5 cut(s) 3, 30, 161, 316, 1330
MflI RGATCY 2 cut(s) 340, 1320
MhlI GDGCHC 2 cut(s) 396, 893
MluCI AATT 6 cut(s) 550, 810, 837, 978, 1053, 1251
MlyI GAGTC 1 cut(s) 1176
MmeI TCCRAC 2 cut(s) 607, 949
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 870, 1056
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 460, 876
MvaI CCWGG 2 cut(s) 460, 876
MwoI GCNNNNNNNGC 4 cut(s) 147, 912, 1142, 1236
NdeII GATC 5 cut(s) 198, 340, 577, 1069, 1320
NlaIII CATG 3 cut(s) 228, 665, 1359
NlaIV GGNNCC 4 cut(s) 342, 495, 890, 891
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 7 cut(s) 361, 536, 544, 586, 1033, 1193, 1282
NspI RCATGY 1 cut(s) 665
PceI AGGCCT 1 cut(s) 691
PciI ACATGT 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 278, 562
PflMI CCANNNNNTGG 1 cut(s) 1127
PkrI GCNGC 5 cut(s) 7, 457, 823, 865, 1238
PleI GAGTC 1 cut(s) 1176
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 1 cut(s) 1176
Ppu21I YACGTR 1 cut(s) 559
PscI ACATGT 1 cut(s) 661
PshBI ATTAAT 1 cut(s) 870
PsiI TTATAA 1 cut(s) 1202
Psp124BI GAGCTC 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 458, 874
PspCI CACGTG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 458, 874
PspN4I GGNNCC 4 cut(s) 342, 495, 890, 891
PspOMI GGGCCC 1 cut(s) 889
PspPI GGNCC 3 cut(s) 889, 890, 1130
PstI CTGCAG 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 2 cut(s) 340, 1320
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 3 cut(s) 206, 495, 1332
RsaNI GTAC 3 cut(s) 205, 494, 1331
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 870, 1056
SatI GCNGC 5 cut(s) 6, 456, 822, 864, 1237
Sau3AI GATC 5 cut(s) 198, 340, 577, 1069, 1320
Sau96I GGNCC 3 cut(s) 889, 890, 1130
SchI GAGTC 1 cut(s) 1176
ScrFI CCNGG 2 cut(s) 460, 876
SduI GDGCHC 2 cut(s) 396, 893
SfaNI GCATC 6 cut(s) 457, 604, 658, 850, 965, 1159
SfcI CTRYAG 1 cut(s) 711
SinI GGWCC 1 cut(s) 1130
SmiMI CAYNNNNRTG 1 cut(s) 666
Sse9I AATT 6 cut(s) 550, 810, 837, 978, 1053, 1251
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 4 cut(s) 34, 270, 497, 1145
SspMI CTAG 3 cut(s) 311, 899, 1038
SstI GAGCTC 1 cut(s) 396
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 2 cut(s) 458, 874
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 6 cut(s) 218, 403, 536, 994, 1086, 1288
TaiI ACGT 3 cut(s) 486, 543, 561
TaqI TCGA 2 cut(s) 266, 1257
TasI AATT 6 cut(s) 550, 810, 837, 978, 1053, 1251
TatI WGTACW 1 cut(s) 1330
TfiI GAWTC 2 cut(s) 278, 562
Tru1I TTAA 2 cut(s) 870, 1056
Tru9I TTAA 2 cut(s) 870, 1056
TscAI CASTG 2 cut(s) 799, 997
TseFI GTSAC 7 cut(s) 361, 536, 544, 586, 1033, 1193, 1282
TseI GCWGC 5 cut(s) 5, 455, 821, 863, 1236
Tsp45I GTSAC 7 cut(s) 361, 536, 544, 586, 1033, 1193, 1282
TspDTI ATGAA 1 cut(s) 316
TspRI CASTG 2 cut(s) 799, 997
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 1 cut(s) 1130
VspI ATTAAT 1 cut(s) 870
XagI CCTNNNNNAGG 1 cut(s) 1047
XapI RAATTY 1 cut(s) 1251
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 3 cut(s) 311, 899, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.