Rh2DG652000

Protease Do-like 1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
87766952 .. 87770247
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG652000.1

Sequence Viewer

Length: 1320 bp
ATGGCTGCTTCTTCCCTGATCTCCACAAACTTCCTCTTCTCTTCTCCTCCTCCTCCATTGTTTCCTCCTCGCTCCCCAATCCGAAAGCTCACCATTGTTTCCCTCCACAAAATCCCAACCCCATCTTCTTCACATGTCAAACCCCACAAACGCTCTCTGCTTCCCTGCAGACCCTTCTGCCCTCCATGTCTCAACAAGCTTCTCCTCACCACCAAGAATCCATTCTCCTTTGCCTTCGACTCCTTGCTCATTCTCTGCACTTCTCTAGCTCTGGCTCTGTCCCTGCTCGTCGCCGACGTCGACTCGGCCTCTGCTTTTGTGGTCACGCCGCAGAGGAAGCTGCAGACGGATGAGCTGGCTACGGTGCGGCTGTTCCAGGAGAACACTCCCTCTGTGGTTTACATCACCAATCTCGCGGCCCGGCAGGATGCGTTTACTTTGGACGTGTTTGAGGTGCCGCAGGGGTCTGGGTCGGGGTTTGTGTGGGATAAAGGTGGGAACATTGTCACCAATTACCACGTGATTCGCGGCGCTTCTGATCTCAGGGTCACTCTTGCTGACCAGTCAACTTTCGATGCAAAAGTTGTTGGATTTGACCAAGACAAGGATGTTGCGGTTTTACATGTTGATGCACCCAAAGACAAACTAAGGCCCATACCAATTGGTGTCTCTGCAGACTTGCTAGTTGGCCAGAAAGTGTTTGCTATCGGCAATCCTTTTGGGCTTGACCATACCCTTACAACTGGTGTTATCAGTGGACTACGCAGAGAAATCAGTTCGGCTGCAACTGGTCGTCCAATCCAAGATGTTATACAGACAGATGCTGCCATTAACCCCGGTAATAGTGGGGGGCCACTTCTAGACAGTGCAGGGAGCCTTATCGGGATAAATACTGCAATATATTCTCCATCTGGTGCATCGTCTGGTGTTGGGTTTTCTATTCCAGTTGATACAGTAAATGGCATTGTTGACCAGTTGGTCAAATTCGGGAAGGTCACCAGACCTATTTTAGGAATTAAGTTTGCACCCGATCAATCTGTTGAACAGTTGGGGGTCAGTGGAGTACTTGTCCTAGATGCACCGGCAAATGGTCCAGCTGGAAAAGCGGGACTGCTACCAACAAAGCGTGATTCCTATGGCAGACTCATATTGGGTGACATTATAACTTCTGTGAATGGAAAAAAAGTCACCAATGGCAGCGACCTGTATAGAATTCTTGACCAATGTCACGTGGGTGATAAGGTGATTGTTGAGGTGTTGCGTGGTGATCAGAAGGAGAAAATCCCTGTTGTACTTGAACCAAAGGCCGACGAGTCATGA

Protein Analysis

439

Amino Acids

46.5

Weight (kDa)

8.19

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin_2 PF13365 157 - 296 7.6e-35 Trypsin-like peptidase domain
Trypsin PF00089 158 - 320 1.7e-18 Trypsin
PDZ_2 PF13180 335 - 430 3.9e-11 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1163
AasI GACNNNNNNGTC 1 cut(s) 977
AatII GACGTC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 454
AccI GTMKAC 1 cut(s) 300
AccII CGCG 2 cut(s) 416, 528
AciI CCGC 7 cut(s) 329, 367, 416, 458, 528, 614, 1106
AcoI YGGCCR 1 cut(s) 688
AcsI RAATTY 2 cut(s) 983, 1212
AcvI CACGTG 2 cut(s) 520, 1231
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 1065, 1293
AfiI CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
AflIII ACRYGT 3 cut(s) 133, 444, 622
AgsI TTSAA 2 cut(s) 1043, 1298
AjiI CACGTC 1 cut(s) 445
AjnI CCWGG 1 cut(s) 375
AjuI GAANNNNNNNTTGG 4 cut(s) 109, 141, 206, 238
AleI CACNNNNGTG 1 cut(s) 1233
AluBI AGCT 6 cut(s) 88, 199, 269, 340, 355, 1097
AluI AGCT 6 cut(s) 88, 199, 269, 340, 355, 1097
Alw26I GTCTC 2 cut(s) 194, 673
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 6 cut(s) 306, 417, 650, 688, 851, 1305
ApeKI GCWGC 5 cut(s) 5, 340, 782, 824, 1197
ApoI RAATTY 2 cut(s) 983, 1212
Asp700I GAANNNNTTC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 4 cut(s) 418, 651, 851, 1091
AsuC2I CCSGG 2 cut(s) 421, 837
AvaII GGWCC 1 cut(s) 1091
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 454
BbrPI CACGTG 2 cut(s) 520, 1231
BbvI GCAGC 4 cut(s) 327, 769, 811, 1209
BccI CCATC 2 cut(s) 130, 916
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 1267
BcnI CCSGG 2 cut(s) 421, 837
BcoDI GTCTC 2 cut(s) 194, 673
BfaI CTAG 4 cut(s) 266, 683, 860, 1073
BfmI CTRYAG 3 cut(s) 166, 341, 672
BfoI RGCGCY 1 cut(s) 534
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 3 cut(s) 377, 421, 837
Bme18I GGWCC 1 cut(s) 1091
BmgBI CACGTC 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 418, 651, 851, 1091
BmiI GGNNCC 3 cut(s) 456, 852, 875
BmrFI CCNGG 3 cut(s) 377, 421, 837
BmsI GCATC 6 cut(s) 418, 565, 619, 811, 926, 1066
BoxI GACNNNNGTC 1 cut(s) 1224
BpuMI CCSGG 2 cut(s) 421, 837
BsaAI YACGTR 2 cut(s) 520, 1231
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 835
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
Bse118I RCCGGY 1 cut(s) 1081
Bse1I ACTGG 5 cut(s) 562, 748, 793, 944, 973
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 835
BseGI GGATG 3 cut(s) 355, 433, 613
BseLI CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
BseMII CTCAG 1 cut(s) 556
BseNI ACTGG 5 cut(s) 562, 748, 793, 944, 973
BseRI GAGGAG 5 cut(s) 36, 39, 42, 57, 194
BseXI GCAGC 4 cut(s) 327, 769, 811, 1209
BsgI GTGCAG 2 cut(s) 241, 888
Bsh1236I CGCG 2 cut(s) 416, 528
BshFI GGCC 6 cut(s) 308, 419, 652, 690, 853, 1307
BshNI GGYRCC 1 cut(s) 454
BsiSI CCGG 3 cut(s) 421, 837, 1082
BslFI GGGAC 2 cut(s) 265, 1122
BslI CCNNNNNNNGG 3 cut(s) 604, 1010, 1088
BsmAI GTCTC 2 cut(s) 194, 673
BsmFI GGGAC 2 cut(s) 265, 1122
BsnI GGCC 6 cut(s) 308, 419, 652, 690, 853, 1307
Bsp143I GATC 4 cut(s) 18, 538, 1030, 1267
BspACI CCGC 7 cut(s) 329, 367, 416, 458, 528, 614, 1106
BspANI GGCC 6 cut(s) 308, 419, 652, 690, 853, 1307
BspCNI CTCAG 1 cut(s) 555
BspFNI CGCG 2 cut(s) 416, 528
BspHI TCATGA 1 cut(s) 1316
BspLI GGNNCC 3 cut(s) 456, 852, 875
BspMAI CTGCAG 3 cut(s) 170, 345, 676
BspT107I GGYRCC 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 1081
BsrI ACTGG 5 cut(s) 562, 748, 793, 944, 973
BssAI RCCGGY 1 cut(s) 1081
BssECI CCNNGG 1 cut(s) 835
BssMI GATC 4 cut(s) 18, 538, 1030, 1267
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 364, 866, 955, 1047
Bst6I CTCTTC 2 cut(s) 41, 46
BstACI GRCGYC 1 cut(s) 297
BstBAI YACGTR 2 cut(s) 520, 1231
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 542, 647
BstEII GGTNACC 1 cut(s) 994
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 3 cut(s) 355, 433, 613
BstFNI CGCG 2 cut(s) 416, 528
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 4 cut(s) 21, 541, 1033, 1270
BstMAI GTCTC 2 cut(s) 194, 673
BstMBI GATC 4 cut(s) 18, 538, 1030, 1267
BstMWI GCNNNNNNNGC 2 cut(s) 337, 1103
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 2 cut(s) 137, 626
BstPAI GACNNNNGTC 1 cut(s) 1224
BstPI GGTNACC 1 cut(s) 994
BstSCI CCNGG 3 cut(s) 375, 419, 835
BstSFI CTRYAG 3 cut(s) 166, 341, 672
BstUI CGCG 2 cut(s) 416, 528
BstV1I GCAGC 4 cut(s) 327, 769, 811, 1209
BsuRI GGCC 6 cut(s) 308, 419, 652, 690, 853, 1307
BtrI CACGTC 1 cut(s) 445
BtsCI GGATG 3 cut(s) 355, 433, 613
BtsIMutI CAGTG 3 cut(s) 760, 871, 1063
Cac8I GCNNGC 1 cut(s) 357
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 1 cut(s) 1316
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 1081
Cfr13I GGNCC 4 cut(s) 418, 651, 851, 1091
Csp6I GTAC 2 cut(s) 1064, 1292
CviAII CATG 4 cut(s) 134, 186, 623, 1317
CviQI GTAC 2 cut(s) 1064, 1292
DdeI CTNAG 2 cut(s) 542, 647
DpnI GATC 4 cut(s) 20, 540, 1032, 1269
DpnII GATC 4 cut(s) 18, 538, 1030, 1267
DrdI GACNNNNNNGTC 1 cut(s) 977
DseDI GACNNNNNNGTC 1 cut(s) 977
EaeI YGGCCR 1 cut(s) 688
Eam1104I CTCTTC 2 cut(s) 41, 46
EarI CTCTTC 2 cut(s) 41, 46
Eco47I GGWCC 1 cut(s) 1091
Eco72I CACGTG 2 cut(s) 520, 1231
Eco91I GGTNACC 1 cut(s) 994
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoO65I GGTNACC 1 cut(s) 994
EcoRI GAATTC 1 cut(s) 1212
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 4 cut(s) 137, 189, 626, 1320
FaqI GGGAC 2 cut(s) 265, 1122
FatI CATG 4 cut(s) 133, 185, 622, 1316
FauI CCCGC 1 cut(s) 1099
FbaI TGATCA 1 cut(s) 1267
FblI GTMKAC 1 cut(s) 300
FokI GGATG 3 cut(s) 362, 440, 620
FspBI CTAG 4 cut(s) 266, 683, 860, 1073
GlaI GCGC 1 cut(s) 532
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 6 cut(s) 308, 419, 652, 690, 853, 1307
HapII CCGG 3 cut(s) 421, 837, 1082
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 4 cut(s) 137, 189, 626, 1320
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HincII GTYRAC 3 cut(s) 301, 567, 970
HindII GTYRAC 3 cut(s) 301, 567, 970
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 7 cut(s) 217, 239, 302, 523, 1130, 1143, 1313
HpaII CCGG 3 cut(s) 421, 837, 1082
Hpy166II GTNNAC 6 cut(s) 301, 400, 435, 567, 758, 970
Hpy188I TCNGA 3 cut(s) 83, 538, 1272
Hpy188III TCNNGA 5 cut(s) 860, 883, 988, 1217, 1317
Hpy8I GTNNAC 6 cut(s) 301, 400, 435, 567, 758, 970
Hpy99I CGWCG 4 cut(s) 293, 299, 302, 1313
HpyAV CCTTC 4 cut(s) 184, 244, 985, 1267
HpyCH4III ACNGT 4 cut(s) 364, 866, 955, 1047
HpyCH4IV ACGT 4 cut(s) 297, 444, 519, 1230
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 1103
HpyF3I CTNAG 2 cut(s) 542, 647
HpySE526I ACGT 4 cut(s) 297, 444, 519, 1230
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 4 cut(s) 137, 189, 626, 1320
HspAI GCGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 1267
Kzo9I GATC 4 cut(s) 18, 538, 1030, 1267
LmnI GCTCC 2 cut(s) 77, 873
Lsp1109I GCAGC 4 cut(s) 327, 769, 811, 1209
LweI GCATC 6 cut(s) 418, 565, 619, 811, 926, 1066
MaeI CTAG 4 cut(s) 266, 683, 860, 1073
MaeII ACGT 4 cut(s) 297, 444, 519, 1230
MaeIII GTNAC 7 cut(s) 322, 505, 547, 994, 1154, 1186, 1226
MalI GATC 4 cut(s) 20, 540, 1032, 1269
MboI GATC 4 cut(s) 18, 538, 1030, 1267
MboII GAAGA 5 cut(s) 3, 28, 33, 117, 120
MfeI CAATTG 1 cut(s) 660
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 5 cut(s) 511, 660, 983, 1014, 1212
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 3 cut(s) 233, 296, 1137
MmeI TCCRAC 1 cut(s) 568
Mox20I TGGCCA 1 cut(s) 690
MroXI GAANNNNTTC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 690
MseI TTAA 2 cut(s) 831, 1017
MslI CAYNNNNRTG 2 cut(s) 627, 1233
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 3 cut(s) 421, 837, 1082
MspR9I CCNGG 3 cut(s) 377, 421, 837
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 377
MvnI CGCG 2 cut(s) 416, 528
MwoI GCNNNNNNNGC 2 cut(s) 337, 1103
NciI CCSGG 2 cut(s) 421, 837
NdeII GATC 4 cut(s) 18, 538, 1030, 1267
NlaIII CATG 4 cut(s) 137, 189, 626, 1320
NlaIV GGNNCC 3 cut(s) 456, 852, 875
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 7 cut(s) 322, 505, 547, 994, 1154, 1186, 1226
NspI RCATGY 2 cut(s) 137, 626
OliI CACNNNNGTG 1 cut(s) 1233
PagI TCATGA 1 cut(s) 1316
PciI ACATGT 2 cut(s) 133, 622
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 297
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 3 cut(s) 217, 523, 1130
PfoI TCCNGGA 1 cut(s) 375
PleI GAGTC 3 cut(s) 233, 296, 1137
PmaCI CACGTG 2 cut(s) 520, 1231
PmlI CACGTG 2 cut(s) 520, 1231
PpsI GAGTC 3 cut(s) 233, 296, 1137
Ppu21I YACGTR 2 cut(s) 520, 1231
PscI ACATGT 2 cut(s) 133, 622
PshAI GACNNNNGTC 1 cut(s) 1224
PsiI TTATAA 1 cut(s) 1163
Psp6I CCWGG 1 cut(s) 375
PspCI CACGTG 2 cut(s) 520, 1231
PspEI GGTNACC 1 cut(s) 994
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 456, 852, 875
PspPI GGNCC 4 cut(s) 418, 651, 851, 1091
PstI CTGCAG 3 cut(s) 170, 345, 676
PstNI CAGNNNCTG 1 cut(s) 824
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 2 cut(s) 1065, 1293
RsaNI GTAC 2 cut(s) 1064, 1292
RseI CAYNNNNRTG 2 cut(s) 627, 1233
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 831, 1017
Sau3AI GATC 4 cut(s) 18, 538, 1030, 1267
Sau96I GGNCC 4 cut(s) 418, 651, 851, 1091
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 3 cut(s) 233, 296, 1137
ScrFI CCNGG 3 cut(s) 377, 421, 837
SfaNI GCATC 6 cut(s) 418, 565, 619, 811, 926, 1066
SfcI CTRYAG 3 cut(s) 166, 341, 672
SinI GGWCC 1 cut(s) 1091
SmiMI CAYNNNNRTG 2 cut(s) 627, 1233
Sse9I AATT 5 cut(s) 511, 660, 983, 1014, 1212
SsiI CCGC 7 cut(s) 329, 367, 416, 458, 528, 614, 1106
SspMI CTAG 4 cut(s) 266, 683, 860, 1073
StyD4I CCNGG 3 cut(s) 375, 419, 835
TaaI ACNGT 4 cut(s) 364, 866, 955, 1047
TaiI ACGT 4 cut(s) 300, 447, 522, 1233
TaqI TCGA 3 cut(s) 237, 300, 573
TasI AATT 5 cut(s) 511, 660, 983, 1014, 1212
TatI WGTACW 2 cut(s) 1063, 1291
TauI GCSGC 5 cut(s) 331, 370, 419, 460, 531
TfiI GAWTC 3 cut(s) 217, 523, 1130
Tru1I TTAA 2 cut(s) 831, 1017
Tru9I TTAA 2 cut(s) 831, 1017
TscAI CASTG 3 cut(s) 760, 871, 1063
TseFI GTSAC 7 cut(s) 322, 505, 547, 994, 1154, 1186, 1226
TseI GCWGC 5 cut(s) 5, 340, 782, 824, 1197
Tsp45I GTSAC 7 cut(s) 322, 505, 547, 994, 1154, 1186, 1226
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 3 cut(s) 760, 871, 1063
VpaK11BI GGWCC 1 cut(s) 1091
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 2 cut(s) 983, 1212
XbaI TCTAGA 1 cut(s) 859
XceI RCATGY 2 cut(s) 137, 626
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 4 cut(s) 266, 683, 860, 1073
ZraI GACGTC 1 cut(s) 298
ZrmI AGTACT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.