Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8512701.1

Orthogroup ID

OG0009878

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2682

Gene Structure 2682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8512701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

tttgaggtgccgcaggggtctgggtccgggtttgtgtgggataaaggtgggaacattgtcaccaattaccacgtcattcgcggcgcttctgatctcagggtcactcttgctgaccagtcaactttcgatgcaaaagttgttggatttgaccaagacaaggatgttgcggttttacatgttgatgcacctaaagacaaactaaggcctataccaattggtgtctctgcagacttgctagttggccagaaagtgtttgctatcggcaatccttttgggcttgaccatacccttacaactggtgttatcagtggactacgcagagaaatcagttcggctgcaactggtcgtccaatccaagatgttatacagacagatgctgccattaaccccggtaatagtggggggccacttctagacagtgcagggagccttattgggataaatactgcaatatattctccatctggtgcatcgtctggtgttgggttttctattccagttgatacagtaaatggcattgttgaccagttggtcaaattcgggaaggtcaccagacctattttaggaattaagtttgcacccgatcaatctgttgaacagttgggggtcagtggagtacttgtcctagatgcaccggcaaatggtccagctggaaaagcgggactgctaccaacaaagcgcgattcctatggcagactcatattgggtgacataataacttctgtgaatggaaaaaaagtcaccaatggcagcgacctgtatagaattcttgaccaatgtcacgtgggtgataaggtgattgttgaggtgttgcgtggtgatcagaaggagaaaatccctgttgtacttgaaccaaaggccgacgagtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0016787 GO:0017171 GO:0019538 GO:0019684 GO:0030091 GO:0030163 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

290

Amino Acids

30.22

Weight (kDa)

5.59

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27925 AT3G27925
fragaria_vesca	FvH4_6g50761
malus_domestica	MD09G1032500.v1.1 MD17G1034100.v1.1
prunus_persica	Prupe.3G285500_v2.0.a1
pyrus_communis	pycom111g02590 pycom17g03150
rosa_chinensis	RchiOBHm_Chr2g0171711
rosa_laevigata	RLG00000022031
rosa_multiflora	Rmu_co8512701.1_g000001 Rmu_ssc0000252.1_g000013
rosa_roxburghii	Rroxscaffold_2G00080500
rosa_rugosa	Rorug02G0555500 Rorug02G0555500
rosa_samantha	Rh2BG641100 Rh2BG643600 Rh2CG609300 Rh2DG652000 Rh2DG657300
rosa_wichuraiana	Rw2G052190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	2 cut(s)	81, 681
AciI	CCGC	4 cut(s)	11, 81, 167, 659
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	536, 765
AcvI	CACGTG	1 cut(s)	784
AfaI	GTAC	2 cut(s)	618, 846
AfiI	CCNNNNNNNGG	3 cut(s)	157, 563, 641
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	596, 851
AjiI	CACGTC	1 cut(s)	73
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	1 cut(s)	650
AluI	AGCT	1 cut(s)	650
Alw26I	GTCTC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	4 cut(s)	203, 241, 404, 858
ApeKI	GCWGC	3 cut(s)	335, 377, 750
ApoI	RAATTY	2 cut(s)	536, 765
AspLEI	GCGC	2 cut(s)	86, 681
AspS9I	GGNCC	3 cut(s)	24, 404, 644
AsuC2I	CCSGG	2 cut(s)	28, 390
AsuHPI	GGTGA	7 cut(s)	52, 541, 719, 733, 800, 808, 830
AvaII	GGWCC	2 cut(s)	24, 644
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	7
BbrPI	CACGTG	1 cut(s)	784
BbvI	GCAGC	3 cut(s)	322, 364, 762
BccI	CCATC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	2 cut(s)	28, 390
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	3 cut(s)	236, 413, 626
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	87
BisI	GCNGC	5 cut(s)	11, 82, 336, 378, 751
BlsI	GCNGC	5 cut(s)	12, 83, 337, 379, 752
BmcAI	AGTACT	1 cut(s)	618
Bme1390I	CCNGG	2 cut(s)	28, 390
Bme18I	GGWCC	2 cut(s)	24, 644
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	24, 404, 644
BmiI	GGNNCC	4 cut(s)	9, 25, 405, 428
BmrFI	CCNGG	2 cut(s)	28, 390
BmsI	GCATC	5 cut(s)	118, 172, 364, 479, 619
BoxI	GACNNNNGTC	1 cut(s)	777
BpuMI	CCSGG	2 cut(s)	28, 390
BsaAI	YACGTR	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 563, 641
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	5 cut(s)	115, 301, 346, 497, 526
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	157, 563, 641
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	5 cut(s)	115, 301, 346, 497, 526
BseXI	GCAGC	3 cut(s)	322, 364, 762
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	2 cut(s)	81, 681
BshFI	GGCC	4 cut(s)	205, 243, 406, 860
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	3 cut(s)	27, 390, 635
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	3 cut(s)	157, 563, 641
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	675
BsnI	GGCC	4 cut(s)	205, 243, 406, 860
Bsp143I	GATC	3 cut(s)	91, 583, 820
BspACI	CCGC	4 cut(s)	11, 81, 167, 659
BspANI	GGCC	4 cut(s)	205, 243, 406, 860
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	81, 681
BspHI	TCATGA	1 cut(s)	869
BspLI	GGNNCC	4 cut(s)	9, 25, 405, 428
BspMAI	CTGCAG	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	634
BsrI	ACTGG	5 cut(s)	115, 301, 346, 497, 526
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	91, 583, 820
Bst4CI	ACNGT	3 cut(s)	419, 508, 600
BstBAI	YACGTR	1 cut(s)	784
BstDEI	CTNAG	2 cut(s)	95, 200
BstEII	GGTNACC	1 cut(s)	547
BstENI	CCTNNNNNAGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	2 cut(s)	81, 681
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 681
BstKTI	GATC	3 cut(s)	94, 586, 823
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	91, 583, 820
BstMWI	GCNNNNNNNGC	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	179
BstPAI	GACNNNNGTC	1 cut(s)	777
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	26, 388
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	2 cut(s)	81, 681
BstV1I	GCAGC	3 cut(s)	322, 364, 762
BsuRI	GGCC	4 cut(s)	205, 243, 406, 860
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	3 cut(s)	313, 424, 616
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	1 cut(s)	869
CfoI	GCGC	2 cut(s)	86, 681
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	3 cut(s)	24, 404, 644
Csp6I	GTAC	2 cut(s)	617, 845
CviAII	CATG	2 cut(s)	176, 870
CviJI	RGCY	8 cut(s)	205, 243, 277, 335, 406, 429, 650, 860
CviKI_1	RGCY	8 cut(s)	205, 243, 277, 335, 406, 429, 650, 860
CviQI	GTAC	2 cut(s)	617, 845
DdeI	CTNAG	2 cut(s)	95, 200
DpnI	GATC	3 cut(s)	93, 585, 822
DpnII	GATC	3 cut(s)	91, 583, 820
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	205
Eco47I	GGWCC	2 cut(s)	24, 644
Eco72I	CACGTG	1 cut(s)	784
Eco91I	GGTNACC	1 cut(s)	547
EcoNI	CCTNNNNNAGG	1 cut(s)	561
EcoO65I	GGTNACC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	765
FaeI	CATG	2 cut(s)	179, 873
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	2 cut(s)	175, 869
FauI	CCCGC	1 cut(s)	652
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	5 cut(s)	11, 82, 336, 378, 751
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	11, 82, 336, 378, 751
FspBI	CTAG	3 cut(s)	236, 413, 626
GlaI	GCGC	2 cut(s)	85, 680
GluI	GCNGC	5 cut(s)	11, 82, 336, 378, 751
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	4 cut(s)	205, 243, 406, 860
HapII	CCGG	3 cut(s)	27, 390, 635
HhaI	GCGC	2 cut(s)	86, 681
Hin1II	CATG	2 cut(s)	179, 873
Hin6I	GCGC	2 cut(s)	84, 679
HinP1I	GCGC	2 cut(s)	84, 679
HincII	GTYRAC	2 cut(s)	120, 523
HindII	GTYRAC	2 cut(s)	120, 523
HinfI	GANTC	3 cut(s)	683, 696, 866
HpaII	CCGG	3 cut(s)	27, 390, 635
HphI	GGTGA	7 cut(s)	52, 541, 719, 733, 800, 808, 830
Hpy166II	GTNNAC	3 cut(s)	120, 311, 523
Hpy188I	TCNGA	2 cut(s)	91, 825
Hpy188III	TCNNGA	4 cut(s)	413, 541, 770, 870
Hpy8I	GTNNAC	3 cut(s)	120, 311, 523
Hpy99I	CGWCG	1 cut(s)	866
HpyAV	CCTTC	2 cut(s)	538, 820
HpyCH4III	ACNGT	3 cut(s)	419, 508, 600
HpyCH4IV	ACGT	2 cut(s)	72, 783
HpyCH4V	TGCA	9 cut(s)	131, 185, 227, 338, 422, 449, 470, 578, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	656
HpyF3I	CTNAG	2 cut(s)	95, 200
HpySE526I	ACGT	2 cut(s)	72, 783
Hsp92II	CATG	2 cut(s)	179, 873
HspAI	GCGC	2 cut(s)	84, 679
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	3 cut(s)	91, 583, 820
LmnI	GCTCC	1 cut(s)	426
Lsp1109I	GCAGC	3 cut(s)	322, 364, 762
LweI	GCATC	5 cut(s)	118, 172, 364, 479, 619
MaeI	CTAG	3 cut(s)	236, 413, 626
MaeII	ACGT	2 cut(s)	72, 783
MaeIII	GTNAC	6 cut(s)	58, 100, 547, 707, 739, 779
MalI	GATC	3 cut(s)	93, 585, 822
MboI	GATC	3 cut(s)	91, 583, 820
MfeI	CAATTG	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	5 cut(s)	64, 213, 536, 567, 765
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	799
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	384, 570
MslI	CAYNNNNRTG	2 cut(s)	180, 786
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	3 cut(s)	27, 390, 635
MspR9I	CCNGG	2 cut(s)	28, 390
MunI	CAATTG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	81, 681
MwoI	GCNNNNNNNGC	1 cut(s)	656
NciI	CCSGG	2 cut(s)	28, 390
NdeII	GATC	3 cut(s)	91, 583, 820
NlaIII	CATG	2 cut(s)	179, 873
NlaIV	GGNNCC	4 cut(s)	9, 25, 405, 428
NmuCI	GTSAC	6 cut(s)	58, 100, 547, 707, 739, 779
NspI	RCATGY	1 cut(s)	179
OliI	CACNNNNGTG	1 cut(s)	786
PagI	TCATGA	1 cut(s)	869
PceI	AGGCCT	1 cut(s)	205
PciI	ACATGT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	683
PkrI	GCNGC	5 cut(s)	12, 83, 337, 379, 752
PleI	GAGTC	1 cut(s)	690
PmaCI	CACGTG	1 cut(s)	784
PmlI	CACGTG	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	690
Ppu21I	YACGTR	1 cut(s)	784
PscI	ACATGT	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	777
PspCI	CACGTG	1 cut(s)	784
PspEI	GGTNACC	1 cut(s)	547
PspN4I	GGNNCC	4 cut(s)	9, 25, 405, 428
PspPI	GGNCC	3 cut(s)	24, 404, 644
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	618, 846
RsaNI	GTAC	2 cut(s)	617, 845
RseI	CAYNNNNRTG	2 cut(s)	180, 786
SaqAI	TTAA	2 cut(s)	384, 570
SatI	GCNGC	5 cut(s)	11, 82, 336, 378, 751
Sau3AI	GATC	3 cut(s)	91, 583, 820
Sau96I	GGNCC	3 cut(s)	24, 404, 644
ScaI	AGTACT	1 cut(s)	618
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	2 cut(s)	28, 390
SfaNI	GCATC	5 cut(s)	118, 172, 364, 479, 619
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	24, 644
SmiMI	CAYNNNNRTG	2 cut(s)	180, 786
Sse9I	AATT	5 cut(s)	64, 213, 536, 567, 765
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	4 cut(s)	11, 81, 167, 659
SspMI	CTAG	3 cut(s)	236, 413, 626
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	26, 388
TaaI	ACNGT	3 cut(s)	419, 508, 600
TaiI	ACGT	2 cut(s)	75, 786
TaqI	TCGA	1 cut(s)	126
TasI	AATT	5 cut(s)	64, 213, 536, 567, 765
TatI	WGTACW	2 cut(s)	616, 844
TauI	GCSGC	2 cut(s)	13, 84
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	2 cut(s)	384, 570
Tru9I	TTAA	2 cut(s)	384, 570
TscAI	CASTG	3 cut(s)	313, 424, 616
TseFI	GTSAC	6 cut(s)	58, 100, 547, 707, 739, 779
TseI	GCWGC	3 cut(s)	335, 377, 750
Tsp45I	GTSAC	6 cut(s)	58, 100, 547, 707, 739, 779
TspRI	CASTG	3 cut(s)	313, 424, 616
VpaK11BI	GGWCC	2 cut(s)	24, 644
XagI	CCTNNNNNAGG	1 cut(s)	561
XapI	RAATTY	2 cut(s)	536, 765
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	3 cut(s)	236, 413, 626
ZrmI	AGTACT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.