RLG00000022031

Protease Do-like 1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
80137685 .. 80144229
6545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022031

Sequence Viewer

Length: 1326 bp
ATGGCTGCTTCTTCCCTGATCTCCACAAACTTCCTCTTCTCTCCTCCTCCTCCTCCTCCTCCATTGTTTCCTCCTCGCTCCCCAATCCGAAAGCTCACCATTGTTTCCCTCCACAAAATCCCAACCCCATCTTCTTCACTTGTCAAACCCCACAAACGCTCTCTGCTTCCCTGCAGACCCTTCTGCCCTCCATGTCTCAACAAGCTTCTCCTCACCACCAAGAATCCATTCTCCTTTGCCTTCGACTCCTTGCTCCTTCTCTGCACTTCTCTAGCTCTGGCTCTGTCCCTGCTCGTCGCCGACGTCGACTCTGCCTCTGCTTTTGTGGTCACGCCGCAGAGGAAGCTGCAGACGGATGAGCTGGCTACGGTGCGGCTGTTCCAGGAGAACACTCCCTCTGTGGTTTACATCACCAATCTCGCGGCCAGGCAGGATGCGTTTACTTTGGACGTGTTTGAGGTGCCGCAGGGGTCTGGGTCGGGGTTTGTGTGGGATAAAGGTGGGAACATTGTCACCAATTACCACGTGATTCGCGGCGCTTCTGATCTCAGGGTCACTCTTGCTGACCAGTCAACTTTCGATGCAAAAGTTGTTGGATTTGACCAAGACAAGGATGTTGCGGTTTTACATGTTGATGCACCCAAAGACAAACTTAGGCCTATACCAATTGGTGTCTCTGCAGACTTGCTAGTTGGCCAGAAAGTGTTTGCTATCGGCAATCCTTTTGGGCTTGACCATACCCTTACTACTGGTGTTATCAGTGGACTACGCAGGGAAATCAGTTCTGCTGCAACTGGTCGTCCAATCCAAGATGTTATACAGACAGATGCTGCCATTAACCCCGGTAATAGTGGGGGGCCACTTCTAGACAGTGCAGGGAGCCTTATCGGGATAAATACTGCAATATATTCTCCATCGGGTGCATCATCCGGTGTTGGGTTTTCTATTCCAGTTGATACTGTAAATGGCATTGTTGACCAGTTGGTCAAATTCGGGAAGGTCACTAGACCTATTTTAGGAATTAAGTTTGCACCCGATCAATCTGTTGAACAGTTGGGGGTCAGTGGAGTACTTGTCCTAGATGCACCGCCAAATGGTCCAGCTGGAAAAGCGGGTCTGCTACCAACAAAGCGTGATTCCTATGGCAGACTCATATTGGGTGACATTATAACTTCTGTGAATGGAAAAAAAGTCACGAATGGCAGCGACCTGTATAGAATTCTTGACCAGTGTCACGTGGGTGATAAGGTGATTGTTGAGGTGTTGCGTGGTGATCAGAAATTGAAAATCCCTGTTGTACTTGAACCAAAGGCCGGCGAGTCATGA

Protein Analysis

442

Amino Acids

46.64

Weight (kDa)

8.69

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin_2 PF13365 159 - 298 7.7e-35 Trypsin-like peptidase domain
Trypsin PF00089 160 - 322 1.7e-18 Trypsin
PDZ_2 PF13180 337 - 432 2.7e-11 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1169
AasI GACNNNNNNGTC 1 cut(s) 983
AatII GACGTC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 306
AccII CGCG 2 cut(s) 422, 534
AciI CCGC 8 cut(s) 335, 373, 422, 464, 534, 620, 1088, 1112
AcoI YGGCCR 2 cut(s) 423, 694
AcsI RAATTY 2 cut(s) 989, 1218
AcvI CACGTG 2 cut(s) 526, 1237
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 1071, 1299
AfiI CCNNNNNNNGG 5 cut(s) 610, 936, 1016, 1094, 1313
AflIII ACRYGT 2 cut(s) 450, 628
AgsI TTSAA 3 cut(s) 1049, 1285, 1304
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 2 cut(s) 381, 425
AjuI GAANNNNNNNTTGG 4 cut(s) 115, 147, 212, 244
AleI CACNNNNGTG 1 cut(s) 1239
AluBI AGCT 6 cut(s) 94, 205, 275, 346, 361, 1103
AluI AGCT 6 cut(s) 94, 205, 275, 346, 361, 1103
Alw26I GTCTC 2 cut(s) 200, 679
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 5 cut(s) 423, 656, 694, 857, 1311
ApeKI GCWGC 5 cut(s) 5, 346, 788, 830, 1203
ApoI RAATTY 2 cut(s) 989, 1218
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 2 cut(s) 857, 1097
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 8 cut(s) 88, 205, 403, 505, 1172, 1253, 1261, 1283
AvaII GGWCC 1 cut(s) 1097
BalI TGGCCA 1 cut(s) 696
BanI GGYRCC 1 cut(s) 460
BbrPI CACGTG 2 cut(s) 526, 1237
BbvI GCAGC 4 cut(s) 333, 775, 817, 1215
BccI CCATC 2 cut(s) 136, 922
BciT130I CCWGG 2 cut(s) 383, 427
BclI TGATCA 1 cut(s) 1273
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 200, 679
BfaI CTAG 5 cut(s) 272, 689, 866, 1005, 1079
BfmI CTRYAG 3 cut(s) 172, 347, 678
BfoI RGCGCY 1 cut(s) 540
BmcAI AGTACT 1 cut(s) 1071
Bme1390I CCNGG 3 cut(s) 383, 427, 843
Bme18I GGWCC 1 cut(s) 1097
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 857, 1097
BmiI GGNNCC 3 cut(s) 462, 858, 881
BmrFI CCNGG 3 cut(s) 383, 427, 843
BmsI GCATC 6 cut(s) 424, 571, 625, 817, 932, 1072
BoxI GACNNNNGTC 1 cut(s) 1230
BpuMI CCSGG 1 cut(s) 843
BsaAI YACGTR 2 cut(s) 526, 1237
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 841
BsaWI WCCGGW 1 cut(s) 929
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 5 cut(s) 610, 936, 1016, 1094, 1313
Bse118I RCCGGY 1 cut(s) 1313
Bse1I ACTGG 6 cut(s) 568, 754, 799, 950, 979, 1228
BseBI CCWGG 2 cut(s) 383, 427
BseDI CCNNGG 1 cut(s) 841
BseGI GGATG 4 cut(s) 361, 439, 619, 926
BseLI CCNNNNNNNGG 5 cut(s) 610, 936, 1016, 1094, 1313
BseMII CTCAG 1 cut(s) 562
BseNI ACTGG 6 cut(s) 568, 754, 799, 950, 979, 1228
BseRI GAGGAG 8 cut(s) 33, 36, 39, 42, 45, 48, 63, 200
BseXI GCAGC 4 cut(s) 333, 775, 817, 1215
BsgI GTGCAG 2 cut(s) 247, 894
Bsh1236I CGCG 2 cut(s) 422, 534
BshFI GGCC 5 cut(s) 425, 658, 696, 859, 1313
BshNI GGYRCC 1 cut(s) 460
BsiSI CCGG 3 cut(s) 843, 930, 1314
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 5 cut(s) 610, 936, 1016, 1094, 1313
BsmAI GTCTC 2 cut(s) 200, 679
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 5 cut(s) 425, 658, 696, 859, 1313
Bsp143I GATC 4 cut(s) 18, 544, 1036, 1273
BspACI CCGC 8 cut(s) 335, 373, 422, 464, 534, 620, 1088, 1112
BspANI GGCC 5 cut(s) 425, 658, 696, 859, 1313
BspCNI CTCAG 1 cut(s) 561
BspFNI CGCG 2 cut(s) 422, 534
BspHI TCATGA 1 cut(s) 1322
BspLI GGNNCC 3 cut(s) 462, 858, 881
BspMAI CTGCAG 3 cut(s) 176, 351, 682
BspT107I GGYRCC 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 1313
BsrI ACTGG 6 cut(s) 568, 754, 799, 950, 979, 1228
BssAI RCCGGY 1 cut(s) 1313
BssECI CCNNGG 1 cut(s) 841
BssMI GATC 4 cut(s) 18, 544, 1036, 1273
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 383, 427
Bst4CI ACNGT 4 cut(s) 370, 872, 961, 1053
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 303
BstBAI YACGTR 2 cut(s) 526, 1237
BstC8I GCNNGC 2 cut(s) 363, 1315
BstDEI CTNAG 2 cut(s) 548, 653
BstENI CCTNNNNNAGG 1 cut(s) 1014
BstF5I GGATG 4 cut(s) 361, 439, 619, 926
BstFNI CGCG 2 cut(s) 422, 534
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 4 cut(s) 21, 547, 1039, 1276
BstMAI GTCTC 2 cut(s) 200, 679
BstMBI GATC 4 cut(s) 18, 544, 1036, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 343, 1109
BstNI CCWGG 2 cut(s) 383, 427
BstNSI RCATGY 1 cut(s) 632
BstPAI GACNNNNGTC 1 cut(s) 1230
BstSCI CCNGG 3 cut(s) 381, 425, 841
BstSFI CTRYAG 3 cut(s) 172, 347, 678
BstUI CGCG 2 cut(s) 422, 534
BstV1I GCAGC 4 cut(s) 333, 775, 817, 1215
BsuRI GGCC 5 cut(s) 425, 658, 696, 859, 1313
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 4 cut(s) 361, 439, 619, 926
BtsIMutI CAGTG 4 cut(s) 766, 877, 1069, 1235
Cac8I GCNNGC 2 cut(s) 363, 1315
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 1 cut(s) 1322
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 1313
Cfr13I GGNCC 2 cut(s) 857, 1097
Csp6I GTAC 2 cut(s) 1070, 1298
CviAII CATG 3 cut(s) 192, 629, 1323
CviQI GTAC 2 cut(s) 1070, 1298
DdeI CTNAG 2 cut(s) 548, 653
DpnI GATC 4 cut(s) 20, 546, 1038, 1275
DpnII GATC 4 cut(s) 18, 544, 1036, 1273
DrdI GACNNNNNNGTC 1 cut(s) 983
DseDI GACNNNNNNGTC 1 cut(s) 983
EaeI YGGCCR 2 cut(s) 423, 694
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 1097
Eco72I CACGTG 2 cut(s) 526, 1237
EcoNI CCTNNNNNAGG 1 cut(s) 1014
EcoRI GAATTC 1 cut(s) 1218
EcoRII CCWGG 2 cut(s) 381, 425
FaeI CATG 3 cut(s) 195, 632, 1326
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FaqI GGGAC 1 cut(s) 271
FatI CATG 3 cut(s) 191, 628, 1322
FauI CCCGC 1 cut(s) 1105
FbaI TGATCA 1 cut(s) 1273
FblI GTMKAC 1 cut(s) 306
FokI GGATG 4 cut(s) 368, 446, 626, 913
FspBI CTAG 5 cut(s) 272, 689, 866, 1005, 1079
GlaI GCGC 1 cut(s) 538
HaeII RGCGCY 1 cut(s) 540
HaeIII GGCC 5 cut(s) 425, 658, 696, 859, 1313
HapII CCGG 3 cut(s) 843, 930, 1314
HhaI GCGC 1 cut(s) 539
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 3 cut(s) 195, 632, 1326
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 3 cut(s) 307, 573, 976
HindII GTYRAC 3 cut(s) 307, 573, 976
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 7 cut(s) 223, 245, 308, 529, 1136, 1149, 1319
HpaII CCGG 3 cut(s) 843, 930, 1314
HphI GGTGA 8 cut(s) 88, 205, 403, 505, 1172, 1253, 1261, 1283
Hpy166II GTNNAC 6 cut(s) 307, 406, 441, 573, 764, 976
Hpy188I TCNGA 3 cut(s) 89, 544, 1278
Hpy188III TCNNGA 6 cut(s) 866, 889, 994, 1195, 1223, 1323
Hpy8I GTNNAC 6 cut(s) 307, 406, 441, 573, 764, 976
Hpy99I CGWCG 3 cut(s) 299, 305, 308
HpyAV CCTTC 4 cut(s) 190, 250, 266, 991
HpyCH4III ACNGT 4 cut(s) 370, 872, 961, 1053
HpyCH4IV ACGT 4 cut(s) 303, 450, 525, 1236
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 1109
HpyF3I CTNAG 2 cut(s) 548, 653
HpySE526I ACGT 4 cut(s) 303, 450, 525, 1236
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 3 cut(s) 195, 632, 1326
HspAI GCGC 1 cut(s) 537
KroI GCCGGC 1 cut(s) 1313
KroNI GCCGGC 1 cut(s) 1315
Ksp22I TGATCA 1 cut(s) 1273
Kzo9I GATC 4 cut(s) 18, 544, 1036, 1273
LmnI GCTCC 3 cut(s) 83, 258, 879
Lsp1109I GCAGC 4 cut(s) 333, 775, 817, 1215
LweI GCATC 6 cut(s) 424, 571, 625, 817, 932, 1072
MaeI CTAG 5 cut(s) 272, 689, 866, 1005, 1079
MaeII ACGT 4 cut(s) 303, 450, 525, 1236
MaeIII GTNAC 7 cut(s) 328, 511, 553, 1000, 1160, 1192, 1232
MalI GATC 4 cut(s) 20, 546, 1038, 1275
MboI GATC 4 cut(s) 18, 544, 1036, 1273
MboII GAAGA 4 cut(s) 3, 28, 123, 126
MfeI CAATTG 1 cut(s) 666
MlsI TGGCCA 1 cut(s) 696
MluCI AATT 6 cut(s) 517, 666, 989, 1020, 1218, 1280
MluNI TGGCCA 1 cut(s) 696
MlyI GAGTC 3 cut(s) 239, 302, 1143
MmeI TCCRAC 1 cut(s) 574
Mox20I TGGCCA 1 cut(s) 696
MroNI GCCGGC 1 cut(s) 1313
MroXI GAANNNNTTC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 696
MseI TTAA 2 cut(s) 837, 1023
MslI CAYNNNNRTG 2 cut(s) 633, 1239
Msp20I TGGCCA 1 cut(s) 696
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 3 cut(s) 843, 930, 1314
MspR9I CCNGG 3 cut(s) 383, 427, 843
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 2 cut(s) 383, 427
MvnI CGCG 2 cut(s) 422, 534
MwoI GCNNNNNNNGC 2 cut(s) 343, 1109
NaeI GCCGGC 1 cut(s) 1315
NciI CCSGG 1 cut(s) 843
NdeII GATC 4 cut(s) 18, 544, 1036, 1273
NgoMIV GCCGGC 1 cut(s) 1313
NlaIII CATG 3 cut(s) 195, 632, 1326
NlaIV GGNNCC 3 cut(s) 462, 858, 881
NmuCI GTSAC 7 cut(s) 328, 511, 553, 1000, 1160, 1192, 1232
NspI RCATGY 1 cut(s) 632
OliI CACNNNNGTG 1 cut(s) 1239
PagI TCATGA 1 cut(s) 1322
PceI AGGCCT 1 cut(s) 658
PciI ACATGT 1 cut(s) 628
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 303
PdiI GCCGGC 1 cut(s) 1315
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 3 cut(s) 223, 529, 1136
PfoI TCCNGGA 1 cut(s) 381
PleI GAGTC 3 cut(s) 239, 302, 1143
PmaCI CACGTG 2 cut(s) 526, 1237
PmlI CACGTG 2 cut(s) 526, 1237
PpsI GAGTC 3 cut(s) 239, 302, 1143
Ppu21I YACGTR 2 cut(s) 526, 1237
PscI ACATGT 1 cut(s) 628
PshAI GACNNNNGTC 1 cut(s) 1230
PsiI TTATAA 1 cut(s) 1169
Psp6I CCWGG 2 cut(s) 381, 425
PspCI CACGTG 2 cut(s) 526, 1237
PspGI CCWGG 2 cut(s) 381, 425
PspN4I GGNNCC 3 cut(s) 462, 858, 881
PspPI GGNCC 2 cut(s) 857, 1097
PstI CTGCAG 3 cut(s) 176, 351, 682
PstNI CAGNNNCTG 1 cut(s) 830
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 2 cut(s) 1071, 1299
RsaNI GTAC 2 cut(s) 1070, 1298
RseI CAYNNNNRTG 2 cut(s) 633, 1239
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 837, 1023
Sau3AI GATC 4 cut(s) 18, 544, 1036, 1273
Sau96I GGNCC 2 cut(s) 857, 1097
ScaI AGTACT 1 cut(s) 1071
SchI GAGTC 3 cut(s) 239, 302, 1143
ScrFI CCNGG 3 cut(s) 383, 427, 843
SfaNI GCATC 6 cut(s) 424, 571, 625, 817, 932, 1072
SfcI CTRYAG 3 cut(s) 172, 347, 678
SinI GGWCC 1 cut(s) 1097
SmiMI CAYNNNNRTG 2 cut(s) 633, 1239
Sse9I AATT 6 cut(s) 517, 666, 989, 1020, 1218, 1280
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 8 cut(s) 335, 373, 422, 464, 534, 620, 1088, 1112
SspMI CTAG 5 cut(s) 272, 689, 866, 1005, 1079
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 3 cut(s) 381, 425, 841
TaaI ACNGT 4 cut(s) 370, 872, 961, 1053
TaiI ACGT 4 cut(s) 306, 453, 528, 1239
TaqI TCGA 3 cut(s) 243, 306, 579
TasI AATT 6 cut(s) 517, 666, 989, 1020, 1218, 1280
TatI WGTACW 2 cut(s) 1069, 1297
TauI GCSGC 5 cut(s) 337, 376, 425, 466, 537
TfiI GAWTC 3 cut(s) 223, 529, 1136
Tru1I TTAA 2 cut(s) 837, 1023
Tru9I TTAA 2 cut(s) 837, 1023
TscAI CASTG 4 cut(s) 766, 877, 1069, 1235
TseFI GTSAC 7 cut(s) 328, 511, 553, 1000, 1160, 1192, 1232
TseI GCWGC 5 cut(s) 5, 346, 788, 830, 1203
Tsp45I GTSAC 7 cut(s) 328, 511, 553, 1000, 1160, 1192, 1232
TspGWI ACGGA 1 cut(s) 368
TspRI CASTG 4 cut(s) 766, 877, 1069, 1235
VpaK11BI GGWCC 1 cut(s) 1097
XagI CCTNNNNNAGG 1 cut(s) 1014
XapI RAATTY 2 cut(s) 989, 1218
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 5 cut(s) 272, 689, 866, 1005, 1079
ZraI GACGTC 1 cut(s) 304
ZrmI AGTACT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.