AT3G27930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012020
Physical Location & Seq
Reverse (-)
10369298 .. 10372534
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27930.1

Sequence Viewer

Length: 1278 bp
ATGGGGAATGCTCTTGTCAAAAAAGAACCACCGCCTCCGGTGGTACTCGTTCCTCCGCTCTTTGATTACCCTCCTCTCTCCGCCCGCACTAGGATGTTGGAATCATCATATAATTTGTTGTTTGGGAAGCTTGCATTGAGATGTCTATTTGAGGATTACTTTGAAGAAGCTAATCGATTCACGGGCAAGTTTTTGTTGAAGCCTACTGATGATCCTCATGTGGATTTGGTTGCATCTGTTTCGGGTGCTGTAGATGGTAGAGTGGAAGGAGATTTTGTTGGGAATGCGGAGTTTCGCTGGCAAAGTGATGTTGATGATCCTCATACTTTTGTTGATCTCTCTGTGTCAACCTCGAATCCGGTTCTTCTAATGAGGTCTTCTGCTTACTATCCTAAATATGGAATCGGGGCATTTGCGGTCTACCCTTTGATTTCAAAAATTACTGGAAAATCATCTGAAGAATATAGAATCATGGGGTTGAGATATGGCTCAACGAATTTGTCTGTCGGAGCTACTGTCACTCCTTTTAGTGCGAATAACGAATTGCCAAAGCATGCATGGCTTGTAAGCAAGATGGGAAGTCTTACAGTAGGAGTACAATATGAGCCGCTACATGGAAGCAAAGATTTGGCAAAGTACACAGACCCAAGAAACTGGAGTTGTGCTGCTGGCTATGGAGTAGGGTCACAAAGCCCCTTGACTCCTTCTTTTAACATTGGCATTGAACTAGCAAGAAGCTCTCAGTTTATTGCTTCGTTCTACCAACACGTAGTGGTCCAAAGACGGGTGCAAAATCCTTTCGAAGAAAACCAAGTAGTTGGAATCACAAACTACATTGATTTTGGTTTTGAGCTACAATCGAGGGTTGATGATTCCAAGACGCCACCCAATGCCCCAGATTCTTTATTGCAGGTGGCTGCGTCTTGGCAGGCCAACAAGAACTTTTTGCTGAAGGGTAAAGTCGGAGCTCATAGCTCAACATTGTCATTAGCATTCAAGTCGTGGTGGAAACCGTCTTTCGCATTCAATATTTCAGCAACAACTAATCATAGGACTGGAAATGTCCAATGTGGGTTCGGTCTACGTGTTGATAACTTAAGAGAAGCCAGTTACCAAAGAGCTGATCCAAACTTTGTAATGCTGACACCGAACAAAGAACATTTAGCTGAAGGGATTGTGTGGAAAATGGGGAAGAGACCAATGTATCAAGCCGATGTGGACGCAGAGAATTTTAGTGAGCTGCCAAAAGAACTTAGACCGTCCCAGAAGATTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

47.2

Weight (kDa)

7.7

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27930 AT3G27930 AT3G27930
fragaria_vesca FvH4_6g50760
malus_domestica MD09G1032600.v1.1 MD17G1034200.v1.1
prunus_persica Prupe.3G285400_v2.0.a1
pyrus_communis pycom17g03160
rosa_chinensis RchiOBHm_Chr2g0171701
rosa_laevigata RLG00000022030
rosa_multiflora Rmu_ssc0000252.1_g000012
rosa_roxburghii Rroxscaffold_2G00080510
rosa_rugosa Rorug02G0555400
rosa_samantha Rh2BG641000 Rh2BG643500 Rh2CG609200 Rh2DG651900 Rh2DG657200
rosa_wichuraiana Rw2G052180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 901
Acc36I ACCTGC 1 cut(s) 901
AccBSI CCGCTC 1 cut(s) 58
AccI GTMKAC 2 cut(s) 420, 1081
AciI CCGC 7 cut(s) 32, 56, 81, 85, 287, 416, 608
AclWI GGATC 3 cut(s) 206, 311, 1118
AcsI RAATTY 2 cut(s) 496, 1228
AcuI CTGAAG 3 cut(s) 477, 971, 1188
AcyI GRCGYC 1 cut(s) 881
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 3 cut(s) 45, 597, 638
AfiI CCNNNNNNNGG 4 cut(s) 90, 398, 614, 784
AflII CTTAAG 1 cut(s) 1096
AflIII ACRYGT 2 cut(s) 766, 1084
AgsI TTSAA 6 cut(s) 164, 199, 435, 725, 997, 1027
Alw21I GWGCWC 1 cut(s) 970
Alw26I GTCTC 1 cut(s) 1189
AlwI GGATC 3 cut(s) 206, 311, 1118
AoxI GGCC 1 cut(s) 930
ApeKI GCWGC 3 cut(s) 665, 917, 1240
ApoI RAATTY 2 cut(s) 496, 1228
AspS9I GGNCC 1 cut(s) 775
AsuII TTCGAA 1 cut(s) 801
AvaII GGWCC 1 cut(s) 775
BaeI ACNNNNGTAYC 2 cut(s) 1187, 1220
BanII GRGCYC 1 cut(s) 970
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 970
BbvI GCAGC 3 cut(s) 652, 904, 1227
BccI CCATC 2 cut(s) 248, 568
BcgI CGANNNNNNTGC 4 cut(s) 222, 256, 981, 1015
BcoDI GTCTC 1 cut(s) 1189
BfaI CTAG 2 cut(s) 90, 728
BfmI CTRYAG 1 cut(s) 249
BfrI CTTAAG 1 cut(s) 1096
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 4 cut(s) 608, 666, 918, 1241
BlsI GCNGC 4 cut(s) 609, 667, 919, 1242
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 775
BmsI GCATC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 676
Bpu14I TTCGAA 1 cut(s) 801
Bsa29I ATCGAT 1 cut(s) 175
BsaAI YACGTR 2 cut(s) 769, 1085
BsaHI GRCGYC 1 cut(s) 881
BsaI GGTCTC 1 cut(s) 1189
BsaWI WCCGGW 2 cut(s) 37, 358
BsaXI ACNNNNNCTCC 6 cut(s) 261, 291, 501, 505, 531, 535
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 398, 614, 784
Bse1I ACTGG 4 cut(s) 448, 659, 1060, 1107
BseCI ATCGAT 1 cut(s) 175
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 4 cut(s) 90, 398, 614, 784
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 4 cut(s) 448, 659, 1060, 1107
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 652, 904, 1227
BshFI GGCC 1 cut(s) 932
BshVI ATCGAT 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 970
BsiSI CCGG 2 cut(s) 38, 359
BslFI GGGAC 1 cut(s) 1246
BslI CCNNNNNNNGG 4 cut(s) 90, 398, 614, 784
BsmAI GTCTC 1 cut(s) 1189
BsmFI GGGAC 1 cut(s) 1246
BsmI GAATGC 4 cut(s) 13, 289, 992, 1022
BsnI GGCC 1 cut(s) 932
Bso31I GGTCTC 1 cut(s) 1189
Bsp119I TTCGAA 1 cut(s) 801
Bsp1286I GDGCHC 1 cut(s) 970
Bsp143I GATC 4 cut(s) 211, 316, 334, 1123
BspACI CCGC 7 cut(s) 32, 56, 81, 85, 287, 416, 608
BspANI GGCC 1 cut(s) 932
BspCNI CTCAG 1 cut(s) 754
BspDI ATCGAT 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 206, 311, 1118
BspT104I TTCGAA 1 cut(s) 801
BspTI CTTAAG 1 cut(s) 1096
BspTNI GGTCTC 1 cut(s) 1189
BsrBI CCGCTC 1 cut(s) 58
BsrI ACTGG 4 cut(s) 448, 659, 1060, 1107
BssMI GATC 4 cut(s) 211, 316, 334, 1123
BssNI GRCGYC 1 cut(s) 881
Bst4CI ACNGT 4 cut(s) 517, 589, 1014, 1260
Bst6I CTCTTC 1 cut(s) 1187
BstACI GRCGYC 1 cut(s) 881
BstAFI CTTAAG 1 cut(s) 1096
BstBAI YACGTR 2 cut(s) 769, 1085
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 6 cut(s) 85, 132, 299, 555, 670, 930
BstDEI CTNAG 2 cut(s) 741, 1253
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 4 cut(s) 214, 319, 337, 1126
BstMAI GTCTC 1 cut(s) 1189
BstMBI GATC 4 cut(s) 211, 316, 334, 1123
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNSI RCATGY 1 cut(s) 557
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 652, 904, 1227
BstV2I GAAGAC 1 cut(s) 369
BstXI CCANNNNNNTGG 2 cut(s) 654, 818
Bsu15I ATCGAT 1 cut(s) 175
BsuRI GGCC 1 cut(s) 932
BsuTUI ATCGAT 1 cut(s) 175
BtsCI GGATG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 6 cut(s) 85, 132, 299, 555, 670, 930
Cfr13I GGNCC 1 cut(s) 775
ClaI ATCGAT 1 cut(s) 175
CseI GACGC 3 cut(s) 889, 909, 1229
Csp6I GTAC 3 cut(s) 44, 596, 637
CviAII CATG 5 cut(s) 218, 472, 554, 558, 614
CviQI GTAC 3 cut(s) 44, 596, 637
DdeI CTNAG 2 cut(s) 741, 1253
DpnI GATC 4 cut(s) 213, 318, 336, 1125
DpnII GATC 4 cut(s) 211, 316, 334, 1123
DraIII CACNNNGTG 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 1187
EarI CTCTTC 1 cut(s) 1187
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 968
Eco24I GRGCYC 1 cut(s) 970
Eco31I GGTCTC 1 cut(s) 1189
Eco47I GGWCC 1 cut(s) 775
Eco53kI GAGCTC 1 cut(s) 968
Eco57I CTGAAG 3 cut(s) 477, 971, 1188
EcoICRI GAGCTC 1 cut(s) 968
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 970
FaeI CATG 5 cut(s) 221, 475, 557, 561, 617
FaqI GGGAC 1 cut(s) 1246
FatI CATG 5 cut(s) 217, 471, 553, 557, 613
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 2 cut(s) 420, 1081
Fnu4HI GCNGC 4 cut(s) 608, 666, 918, 1241
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 970
Fsp4HI GCNGC 4 cut(s) 608, 666, 918, 1241
FspBI CTAG 2 cut(s) 90, 728
GluI GCNGC 4 cut(s) 608, 666, 918, 1241
GsuI CTGGAG 1 cut(s) 676
HaeIII GGCC 1 cut(s) 932
HapII CCGG 2 cut(s) 38, 359
HgaI GACGC 3 cut(s) 889, 909, 1229
Hin1I GRCGYC 1 cut(s) 881
Hin1II CATG 5 cut(s) 221, 475, 557, 561, 617
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 128
HpaII CCGG 2 cut(s) 38, 359
Hpy166II GTNNAC 5 cut(s) 348, 421, 639, 1082, 1219
Hpy188I TCNGA 3 cut(s) 457, 509, 965
Hpy8I GTNNAC 5 cut(s) 348, 421, 639, 1082, 1219
HpyAV CCTTC 4 cut(s) 260, 714, 946, 1163
HpyCH4III ACNGT 4 cut(s) 517, 589, 1014, 1260
HpyCH4IV ACGT 2 cut(s) 768, 1084
HpyCH4V TGCA 5 cut(s) 134, 233, 557, 790, 910
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 2 cut(s) 741, 1253
HpySE526I ACGT 2 cut(s) 768, 1084
Hsp92I GRCGYC 1 cut(s) 881
Hsp92II CATG 5 cut(s) 221, 475, 557, 561, 617
Kzo9I GATC 4 cut(s) 211, 316, 334, 1123
LmnI GCTCC 2 cut(s) 509, 965
Lsp1109I GCAGC 3 cut(s) 652, 904, 1227
LweI GCATC 1 cut(s) 242
MaeI CTAG 2 cut(s) 90, 728
MaeII ACGT 2 cut(s) 768, 1084
MaeIII GTNAC 3 cut(s) 517, 684, 1109
MalI GATC 4 cut(s) 213, 318, 336, 1125
MbiI CCGCTC 1 cut(s) 58
MboI GATC 4 cut(s) 211, 316, 334, 1123
MboII GAAGA 6 cut(s) 176, 356, 369, 470, 815, 1204
MhlI GDGCHC 1 cut(s) 970
MluCI AATT 5 cut(s) 112, 438, 496, 542, 1228
MlyI GAGTC 1 cut(s) 694
MmeI TCCRAC 4 cut(s) 78, 487, 799, 943
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 2 cut(s) 711, 1097
MslI CAYNNNNRTG 2 cut(s) 92, 139
MspCI CTTAAG 1 cut(s) 1096
MspI CCGG 2 cut(s) 38, 359
Mva1269I GAATGC 4 cut(s) 13, 289, 992, 1022
MwoI GCNNNNNNNGC 1 cut(s) 559
NdeII GATC 4 cut(s) 211, 316, 334, 1123
NlaIII CATG 5 cut(s) 221, 475, 557, 561, 617
NmuCI GTSAC 2 cut(s) 517, 684
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 557
NspV TTCGAA 1 cut(s) 801
PaeI GCATGC 1 cut(s) 557
PaqCI CACCTGC 1 cut(s) 901
PctI GAATGC 4 cut(s) 13, 289, 992, 1022
PfeI GAWTC 9 cut(s) 101, 177, 355, 402, 468, 822, 872, 899, 1270
PkrI GCNGC 4 cut(s) 609, 667, 919, 1242
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
Ppu21I YACGTR 2 cut(s) 769, 1085
Psp124BI GAGCTC 1 cut(s) 970
PspPI GGNCC 1 cut(s) 775
RsaI GTAC 3 cut(s) 45, 597, 638
RsaNI GTAC 3 cut(s) 44, 596, 637
RseI CAYNNNNRTG 2 cut(s) 92, 139
SacI GAGCTC 1 cut(s) 970
SaqAI TTAA 2 cut(s) 711, 1097
SatI GCNGC 4 cut(s) 608, 666, 918, 1241
Sau3AI GATC 4 cut(s) 211, 316, 334, 1123
Sau96I GGNCC 1 cut(s) 775
SchI GAGTC 1 cut(s) 694
SduI GDGCHC 1 cut(s) 970
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 2 cut(s) 92, 139
SmlI CTYRAG 1 cut(s) 1096
SmoI CTYRAG 1 cut(s) 1096
SphI GCATGC 1 cut(s) 557
Sse9I AATT 5 cut(s) 112, 438, 496, 542, 1228
SsiI CCGC 7 cut(s) 32, 56, 81, 85, 287, 416, 608
SspI AATATT 1 cut(s) 1030
SspMI CTAG 2 cut(s) 90, 728
SstI GAGCTC 1 cut(s) 970
TaaI ACNGT 4 cut(s) 517, 589, 1014, 1260
TaiI ACGT 2 cut(s) 771, 1087
TaqI TCGA 4 cut(s) 175, 353, 801, 860
TaqII GACCGA 1 cut(s) 1067
TasI AATT 5 cut(s) 112, 438, 496, 542, 1228
TatI WGTACW 2 cut(s) 595, 636
TauI GCSGC 1 cut(s) 610
TfiI GAWTC 9 cut(s) 101, 177, 355, 402, 468, 822, 872, 899, 1270
Tru1I TTAA 2 cut(s) 711, 1097
Tru9I TTAA 2 cut(s) 711, 1097
TseFI GTSAC 2 cut(s) 517, 684
TseI GCWGC 3 cut(s) 665, 917, 1240
Tsp45I GTSAC 2 cut(s) 517, 684
Vha464I CTTAAG 1 cut(s) 1096
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 2 cut(s) 496, 1228
XceI RCATGY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XmiI GTMKAC 2 cut(s) 420, 1081
XspI CTAG 2 cut(s) 90, 728
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.