Prupe.3G285400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012020
Physical Location & Seq
Forward (+)
25828629 .. 25832694
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G285400.1

Sequence Viewer

Length: 1299 bp
ATGGGGAACTTGATGAACAAGGAGCCACCACCGCCTATGGTGCTGGTACCACCTCTCTTCGACTTTCCTCCTCTCGCAGCCCGCACCAGGATGTTGGAGTCATCATATGACTTGTTGTTTGGGAAGCTTGCTTTGAAATGTCTGTTTGACGATTATTTTGAACAAGCAAGGCATTTTAGCACAATGATCATGCTAAAGCCCATAGATGATCCTCATGTCGATTTGGTTGCAACTGTTTCAGGACCACTTGATCACAAACCCGAGGAGAGTATTGTTGGAAATGCATTTTTCCGCTGGCAAAGTGATGTTGATGATCCTCATACATTCATGGACCTCTTCGTATCGAACACTGATCCGACTTTGCAAATGAGGGCCTGTGCTTACTACCCTAAATATGGATTTGGAGCGTTCGGAATTTTCCCAATGCTTCTGAAAAAAAGAATAACTTCTGAAGACTTTGGTGTTATGGGATTGAGATATGGCTCCACAAACTTGTCAATTGGAGCCACAGCCATGCCTTTCTCCATGAAAGATGAATGTCCAAGAAGGGCATGGTTGGTGAGCAAGATGGGAAGACTAACAGCTGGGGTGCAGTATGAGCCTGAATATGGGAGTAAAGAAGGTCAAAAATACAGAAATTTAAAGAATTGGAGTTGTGCAATCGGTTATGGAGTGGGATCAAGCAGCCCTTTGAGTCCATCATTCAACTTTGGTCTCGAGCTATCGAAAAGTTCTCAGTTCATTGCCTCATTCTATCAACATGTGGTGGTCCAAAGACGGGTGAAAAACCCCCTCGAAGAAAATGAAGTAGTTGGAATTACGAATTATATCGATTTTGGCTTTGAATTGCAGACCAGGGTTGATGACACCAAATCGTCAAACGATGTACCAGAATCAAGCTATGTACCTCAAGTCCCAGATTCAACCTTTCAAGTAGCTGCATCCTGGCAAGCCAATAAAAACTTTTTGCTGAAGGGAAAGGTGGGCCCTCTGAGCTCATCTATAGCGTTGGCATTTAAATCATGGTGGAAACCTTCTTTCACATTCAGCATTTCAGCTACCAGAGATCACGTTGTTGGGGAGACAGGTTATGGTTTTGGCATTCGCGTTGAGAATCTTAGACAAGCCAGTTATCAAAGAGCCGATCCAAACTTTGTAATGTTGACGCCAAATAAGGAGCACCTGGCAGAAGGCATTGTTTGGAAAGTTGGGAAAAGACCGATGCTACAATCAGATATAACTGCTGGAAATTTTGACGGCATACCAAAGGAATTAAGACCCCTTGGGAAAATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

433

Amino Acids

48.42

Weight (kDa)

7.65

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27930 AT3G27930 AT3G27930
fragaria_vesca FvH4_6g50760
malus_domestica MD09G1032600.v1.1 MD17G1034200.v1.1
prunus_persica Prupe.3G285400_v2.0.a1
pyrus_communis pycom17g03160
rosa_chinensis RchiOBHm_Chr2g0171701
rosa_laevigata RLG00000022030
rosa_multiflora Rmu_ssc0000252.1_g000012
rosa_roxburghii Rroxscaffold_2G00080510
rosa_rugosa Rorug02G0555400
rosa_samantha Rh2BG641000 Rh2BG643500 Rh2CG609200 Rh2DG651900 Rh2DG657200
rosa_wichuraiana Rw2G052180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AccII CGCG 1 cut(s) 1107
AciI CCGC 3 cut(s) 32, 82, 292
AclWI GGATC 5 cut(s) 203, 308, 347, 685, 1139
AcsI RAATTY 3 cut(s) 414, 637, 1249
AcuI CTGAAG 2 cut(s) 471, 992
AcyI GRCGYC 1 cut(s) 1166
AfaI GTAC 3 cut(s) 48, 888, 906
AfiI CCNNNNNNNGG 4 cut(s) 87, 395, 608, 778
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 6 cut(s) 136, 161, 706, 845, 924, 932
AjnI CCWGG 4 cut(s) 86, 854, 944, 1182
AluBI AGCT 7 cut(s) 127, 584, 721, 900, 938, 996, 1058
AluI AGCT 7 cut(s) 127, 584, 721, 900, 938, 996, 1058
Alw21I GWGCWC 2 cut(s) 998, 1182
Alw26I GTCTC 2 cut(s) 719, 1076
AlwI GGATC 5 cut(s) 203, 308, 347, 685, 1139
Ama87I CYCGRG 2 cut(s) 260, 716
AoxI GGCC 2 cut(s) 372, 985
ApaI GGGCCC 1 cut(s) 989
ApeKI GCWGC 3 cut(s) 77, 684, 938
ApoI RAATTY 3 cut(s) 414, 637, 1249
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 140, 172
Asp700I GAANNNNTTC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 46
AspS9I GGNCC 6 cut(s) 242, 331, 372, 769, 985, 986
AsuHPI GGTGA 2 cut(s) 571, 793
AvaI CYCGRG 2 cut(s) 260, 716
AvaII GGWCC 3 cut(s) 242, 331, 769
BaeGI GKGCMC 1 cut(s) 989
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 989, 998
BbsI GAAGAC 2 cut(s) 459, 580
Bbv12I GWGCWC 2 cut(s) 998, 1182
BbvI GCAGC 3 cut(s) 89, 696, 925
BccI CCATC 2 cut(s) 562, 706
BceAI ACGGC 1 cut(s) 1273
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 4 cut(s) 88, 856, 946, 1184
BclI TGATCA 2 cut(s) 186, 250
BcoDI GTCTC 2 cut(s) 719, 1076
BfmI CTRYAG 1 cut(s) 1002
BisI GCNGC 3 cut(s) 78, 685, 939
BlsI GCNGC 3 cut(s) 79, 686, 940
Bme1390I CCNGG 4 cut(s) 88, 856, 946, 1184
Bme18I GGWCC 3 cut(s) 242, 331, 769
BmeT110I CYCGRG 2 cut(s) 260, 716
BmgT120I GGNCC 6 cut(s) 242, 331, 372, 769, 985, 986
BmiI GGNNCC 5 cut(s) 24, 48, 484, 505, 987
BmrFI CCNGG 4 cut(s) 88, 856, 946, 1184
BmsI GCATC 2 cut(s) 950, 1212
BpiI GAAGAC 2 cut(s) 459, 580
BpuEI CTTGAG 1 cut(s) 894
Bsa29I ATCGAT 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 1166
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 3 cut(s) 261, 855, 1282
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 395, 608, 778
Bse1I ACTGG 1 cut(s) 1128
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 4 cut(s) 88, 856, 946, 1184
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 261, 855, 1282
BseGI GGATG 2 cut(s) 96, 941
BseLI CCNNNNNNNGG 4 cut(s) 87, 395, 608, 778
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 2 cut(s) 749, 983
BseNI ACTGG 1 cut(s) 1128
BseRI GAGGAG 2 cut(s) 60, 278
BseSI GKGCMC 1 cut(s) 989
BseXI GCAGC 3 cut(s) 89, 696, 925
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 2 cut(s) 374, 987
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 831
BsiHKAI GWGCWC 2 cut(s) 998, 1182
BsiHKCI CYCGRG 2 cut(s) 260, 716
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 4 cut(s) 87, 395, 608, 778
BsmAI GTCTC 2 cut(s) 719, 1076
BsmFI GGGAC 1 cut(s) 899
BsmI GAATGC 1 cut(s) 1101
BsnI GGCC 2 cut(s) 374, 987
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 2 cut(s) 260, 716
Bsp120I GGGCCC 1 cut(s) 985
Bsp1286I GDGCHC 3 cut(s) 989, 998, 1182
Bsp143I GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
BspACI CCGC 3 cut(s) 32, 82, 292
BspANI GGCC 2 cut(s) 374, 987
BspCNI CTCAG 2 cut(s) 748, 984
BspDI ATCGAT 1 cut(s) 831
BspFNI CGCG 1 cut(s) 1107
BspLI GGNNCC 5 cut(s) 24, 48, 484, 505, 987
BspPI GGATC 5 cut(s) 203, 308, 347, 685, 1139
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 1 cut(s) 1128
BssECI CCNNGG 3 cut(s) 261, 855, 1282
BssMI GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
BssNI GRCGYC 1 cut(s) 1166
BssT1I CCWWGG 1 cut(s) 1282
Bst2UI CCWGG 4 cut(s) 88, 856, 946, 1184
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 62, 341
BstACI GRCGYC 1 cut(s) 1166
BstC8I GCNNGC 4 cut(s) 82, 129, 296, 951
BstDEI CTNAG 3 cut(s) 735, 992, 1118
BstF5I GGATG 2 cut(s) 96, 941
BstFNI CGCG 1 cut(s) 1107
BstKTI GATC 8 cut(s) 189, 211, 253, 316, 355, 680, 1069, 1147
BstMAI GTCTC 2 cut(s) 719, 1076
BstMBI GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 31, 40, 598, 993
BstNI CCWGG 4 cut(s) 88, 856, 946, 1184
BstNSI RCATGY 1 cut(s) 764
BstSCI CCNGG 4 cut(s) 86, 854, 944, 1182
BstSFI CTRYAG 1 cut(s) 1002
BstSLI GKGCMC 1 cut(s) 989
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 3 cut(s) 89, 696, 925
BstV2I GAAGAC 2 cut(s) 459, 580
BstXI CCANNNNNNTGG 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 2 cut(s) 374, 987
BsuTUI ATCGAT 1 cut(s) 831
BtsCI GGATG 2 cut(s) 96, 941
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 4 cut(s) 82, 129, 296, 951
Cfr13I GGNCC 6 cut(s) 242, 331, 372, 769, 985, 986
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 1 cut(s) 1174
Csp6I GTAC 3 cut(s) 47, 887, 905
CviAII CATG 8 cut(s) 190, 215, 328, 514, 526, 552, 761, 1023
CviQI GTAC 3 cut(s) 47, 887, 905
DdeI CTNAG 3 cut(s) 735, 992, 1118
DpnI GATC 8 cut(s) 188, 210, 252, 315, 354, 679, 1068, 1146
DpnII GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
DraI TTTAAA 2 cut(s) 642, 1018
Eam1104I CTCTTC 2 cut(s) 62, 341
EarI CTCTTC 2 cut(s) 62, 341
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 1282
Eco24I GRGCYC 2 cut(s) 989, 998
Eco31I GGTCTC 1 cut(s) 719
Eco47I GGWCC 3 cut(s) 242, 331, 769
Eco53kI GAGCTC 1 cut(s) 996
Eco57I CTGAAG 2 cut(s) 471, 992
Eco88I CYCGRG 2 cut(s) 260, 716
EcoICRI GAGCTC 1 cut(s) 996
EcoO109I RGGNCCY 2 cut(s) 372, 986
EcoRII CCWGG 4 cut(s) 86, 854, 944, 1182
EcoT14I CCWWGG 1 cut(s) 1282
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 989, 998
ErhI CCWWGG 1 cut(s) 1282
FaeI CATG 8 cut(s) 193, 218, 331, 517, 529, 555, 764, 1026
FalI AAGNNNNNCTT 4 cut(s) 430, 462, 673, 705
FaqI GGGAC 1 cut(s) 899
FatI CATG 8 cut(s) 189, 214, 327, 513, 525, 551, 760, 1022
FauI CCCGC 1 cut(s) 89
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 2 cut(s) 186, 250
Fnu4HI GCNGC 3 cut(s) 78, 685, 939
FokI GGATG 2 cut(s) 103, 928
FriOI GRGCYC 2 cut(s) 989, 998
Fsp4HI GCNGC 3 cut(s) 78, 685, 939
GluI GCNGC 3 cut(s) 78, 685, 939
GsaI CCCAGC 1 cut(s) 588
HaeIII GGCC 2 cut(s) 374, 987
HgaI GACGC 1 cut(s) 1174
Hin1I GRCGYC 1 cut(s) 1166
Hin1II CATG 8 cut(s) 193, 218, 331, 517, 529, 555, 764, 1026
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 5 cut(s) 98, 694, 893, 920, 1114
HphI GGTGA 2 cut(s) 571, 793
Hpy166II GTNNAC 1 cut(s) 1164
Hpy188I TCNGA 6 cut(s) 357, 413, 432, 451, 993, 1234
Hpy188III TCNNGA 2 cut(s) 240, 716
Hpy8I GTNNAC 1 cut(s) 1164
HpyAV CCTTC 5 cut(s) 540, 614, 967, 1044, 1184
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 1071
HpyCH4V TGCA 7 cut(s) 230, 284, 364, 592, 659, 850, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 40, 598, 993
HpyF3I CTNAG 3 cut(s) 735, 992, 1118
HpySE526I ACGT 1 cut(s) 1071
Hsp92I GRCGYC 1 cut(s) 1166
Hsp92II CATG 8 cut(s) 193, 218, 331, 517, 529, 555, 764, 1026
KpnI GGTACC 1 cut(s) 50
Ksp22I TGATCA 2 cut(s) 186, 250
Kzo9I GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
LmnI GCTCC 5 cut(s) 22, 404, 488, 503, 1177
Lsp1109I GCAGC 3 cut(s) 89, 696, 925
LweI GCATC 2 cut(s) 950, 1212
MaeII ACGT 1 cut(s) 1071
MalI GATC 8 cut(s) 188, 210, 252, 315, 354, 679, 1068, 1146
MboI GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
MboII GAAGA 5 cut(s) 49, 328, 464, 585, 809
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 3 cut(s) 989, 998, 1182
MluCI AATT 9 cut(s) 414, 498, 637, 646, 816, 823, 845, 1249, 1271
MlyI GAGTC 2 cut(s) 107, 703
MmeI TCCRAC 4 cut(s) 75, 256, 380, 793
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 3 cut(s) 641, 1017, 1274
MslI CAYNNNNRTG 2 cut(s) 89, 512
MspA1I CMGCKG 2 cut(s) 294, 584
MspR9I CCNGG 4 cut(s) 88, 856, 946, 1184
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 1101
MvaI CCWGG 4 cut(s) 88, 856, 946, 1184
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 4 cut(s) 31, 40, 598, 993
NdeI CATATG 1 cut(s) 106
NdeII GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
NlaIII CATG 8 cut(s) 193, 218, 331, 517, 529, 555, 764, 1026
NlaIV GGNNCC 5 cut(s) 24, 48, 484, 505, 987
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 764
PaeR7I CTCGAG 1 cut(s) 716
PciI ACATGT 1 cut(s) 760
PctI GAATGC 1 cut(s) 1101
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 893, 920, 1114
PkrI GCNGC 3 cut(s) 79, 686, 940
PleI GAGTC 2 cut(s) 106, 702
PpsI GAGTC 2 cut(s) 106, 702
PscI ACATGT 1 cut(s) 760
Psp124BI GAGCTC 1 cut(s) 998
Psp6I CCWGG 4 cut(s) 86, 854, 944, 1182
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 4 cut(s) 86, 854, 944, 1182
PspN4I GGNNCC 5 cut(s) 24, 48, 484, 505, 987
PspOMI GGGCCC 1 cut(s) 985
PspPI GGNCC 6 cut(s) 242, 331, 372, 769, 985, 986
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 3 cut(s) 48, 888, 906
RsaNI GTAC 3 cut(s) 47, 887, 905
RseI CAYNNNNRTG 2 cut(s) 89, 512
SacI GAGCTC 1 cut(s) 998
SaqAI TTAA 3 cut(s) 641, 1017, 1274
SatI GCNGC 3 cut(s) 78, 685, 939
Sau3AI GATC 8 cut(s) 186, 208, 250, 313, 352, 677, 1066, 1144
Sau96I GGNCC 6 cut(s) 242, 331, 372, 769, 985, 986
SchI GAGTC 2 cut(s) 107, 703
ScrFI CCNGG 4 cut(s) 88, 856, 946, 1184
SduI GDGCHC 3 cut(s) 989, 998, 1182
SfaNI GCATC 2 cut(s) 950, 1212
SfcI CTRYAG 1 cut(s) 1002
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 3 cut(s) 242, 331, 769
SlaI CTCGAG 1 cut(s) 716
SmiI ATTTAAAT 1 cut(s) 1018
SmiMI CAYNNNNRTG 2 cut(s) 89, 512
SmlI CTYRAG 2 cut(s) 716, 909
SmoI CTYRAG 2 cut(s) 716, 909
Sse9I AATT 9 cut(s) 414, 498, 637, 646, 816, 823, 845, 1249, 1271
SsiI CCGC 3 cut(s) 32, 82, 292
SstI GAGCTC 1 cut(s) 998
StyD4I CCNGG 4 cut(s) 86, 854, 944, 1182
StyI CCWWGG 1 cut(s) 1282
SwaI ATTTAAAT 1 cut(s) 1018
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 1074
TaqI TCGA 7 cut(s) 60, 219, 344, 717, 725, 795, 831
TaqII GACCGA 1 cut(s) 1234
TasI AATT 9 cut(s) 414, 498, 637, 646, 816, 823, 845, 1249, 1271
TfiI GAWTC 3 cut(s) 893, 920, 1114
Tru1I TTAA 3 cut(s) 641, 1017, 1274
Tru9I TTAA 3 cut(s) 641, 1017, 1274
TscAI CASTG 1 cut(s) 355
TseI GCWGC 3 cut(s) 77, 684, 938
TspDTI ATGAA 6 cut(s) 29, 316, 542, 549, 730, 819
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 3 cut(s) 242, 331, 769
XapI RAATTY 3 cut(s) 414, 637, 1249
XceI RCATGY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.