Rh2CG609200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012020
Physical Location & Seq
Forward (+)
78481001 .. 78485491
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG609200.1

Sequence Viewer

Length: 1317 bp
ATGGGGAATTTGTTCGACAAGGAGCCGCCGCCGCCTATTGTGCTCGTCCCGCCGCTCTTCGATTATCCGCCTCTCGCCGCTCGCACCAGGATGTTGGAGTCGTCATATGACTTGTTGTTTGGGAAGCTTGCTTTGAAAGGTCTGTTTCAGGACTATTTTGAACAAGCAAGGCATTTCAGCACAATGATCATGCTAAAGCCGATTGATGACCCTCATGTGGATTTAGTTGCAACGCTCTCTGGTCCACTTGATCACAAACCTGAGGAGACCATTGTTGGGAATGCATTTTTCCGCTGGCAAAGTGATGTTCATGATCCTCACACATTCGTGGACCTCTTCGTATCAAACTCAGATCCGATTTTGCAGACGAGGGCATGTGCTTACTACCCAAAATTTGGATTTGGAGCATTTGGTGTCTTCCCGGTGCTGCTAAAACAAAGAATAACATCTGAGGACTTTGGTGTTATGGGATTGAGATACGGCTCAGCAAACTTATCAATTGGAGCCACAGTCATGCCTTTCTCTGTGAAAGATGATTTGCCAAGAAAGGCGTGGCTGGTGACCAAAATGGGAAGTCTAACTGCAGGTGTGCAGTATGAGCCAGAATTTGGAAGCAAAGATGGTCAAAAATACAAAGACTTAAAGAATTGGAGTGGTGCGATTGGGTATGGAGTGGGGTCAAGCAGCCCTTTGAGTCCATCGTTCAATTTTGGTCTCGAGCTTTCTAGAAGTAATCAGTTCACTGCCTCGTTCTATCAACATGTGGTGGTCCAAAGACGGGTGAAAAACCCCCTCGAAGAAAATCAAGTTGTTGGGATTACGAATTATATCGATTTTGGCTTTGAATTACAATCAAGGGTTGATAGGTTTGATGATACCAAAACATCAGACGATGAATCAAACTCAAACAAAGTACCAGATCCTAAGAATATACCAGATTCCACCTTTCAAATAGCTGCATCTTGGCAAGCCAACAAGAACTTTTTGCTGAAGGGAAAGGTGGGCCCTCTCAGCTCATCGCTAGCATTGGCATTTAAATCATGGTGGAAACCTTCTTTCACATTCAGCATTTCAGCTGTCAGAGATCACATATTTGGAAATACAGCTTACGGTTTTGGCATTCGTGTTGAGAATATCAGACAAGCCAGCTACCAAAGAGCCGATCCAAATTTTGTAATGTTGACACCAAGTAAGGAGCACCTGGCAGAAGGCATTGTTTGGCAAGCTGGGAAACGGCCGATGCTAGAGTCAAATATAAATGCTGGAAATTTTGACGGCGTACCAATGGAATTACAACCCTTGCGAAAAATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

48.99

Weight (kDa)

6.73

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27930 AT3G27930 AT3G27930
fragaria_vesca FvH4_6g50760
malus_domestica MD09G1032600.v1.1 MD17G1034200.v1.1
prunus_persica Prupe.3G285400_v2.0.a1
pyrus_communis pycom17g03160
rosa_chinensis RchiOBHm_Chr2g0171701
rosa_laevigata RLG00000022030
rosa_multiflora Rmu_ssc0000252.1_g000012
rosa_roxburghii Rroxscaffold_2G00080510
rosa_rugosa Rorug02G0555400
rosa_samantha Rh2BG641000 Rh2BG643500 Rh2CG609200 Rh2DG651900 Rh2DG657200
rosa_wichuraiana Rw2G052180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 575
AccB7I CCANNNNNTGG 2 cut(s) 395, 608
AccBSI CCGCTC 2 cut(s) 55, 80
AciI CCGC 8 cut(s) 26, 29, 32, 50, 53, 68, 78, 292
AclWI GGATC 4 cut(s) 308, 347, 914, 1157
AcoI YGGCCR 1 cut(s) 1235
AcsI RAATTY 6 cut(s) 7, 392, 605, 1168, 1267, 1308
AcuI CTGAAG 1 cut(s) 1010
AfaI GTAC 2 cut(s) 915, 1281
AfiI CCNNNNNNNGG 5 cut(s) 217, 276, 395, 608, 778
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 5 cut(s) 136, 161, 706, 845, 950
AjnI CCWGG 2 cut(s) 86, 1200
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 8 cut(s) 127, 721, 956, 1014, 1076, 1106, 1149, 1226
AluI AGCT 8 cut(s) 127, 721, 956, 1014, 1076, 1106, 1149, 1226
Alw21I GWGCWC 2 cut(s) 45, 1200
Alw26I GTCTC 2 cut(s) 260, 719
AlwI GGATC 4 cut(s) 308, 347, 914, 1157
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 2 cut(s) 1003, 1235
ApaI GGGCCC 1 cut(s) 1007
ApeKI GCWGC 3 cut(s) 427, 684, 956
ApoI RAATTY 6 cut(s) 7, 392, 605, 1168, 1267, 1308
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 5 cut(s) 242, 331, 769, 1003, 1004
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 571, 793
AsuNHI GCTAGC 1 cut(s) 1021
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 3 cut(s) 242, 331, 769
AxyI CCTNAGG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 1007
BanII GRGCYC 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 2 cut(s) 45, 1200
BbvI GCAGC 3 cut(s) 414, 696, 943
BccI CCATC 2 cut(s) 614, 706
BceAI ACGGC 3 cut(s) 496, 1250, 1291
BciT130I CCWGG 2 cut(s) 88, 1202
BclI TGATCA 2 cut(s) 186, 250
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 260, 719
BfaI CTAG 3 cut(s) 726, 1022, 1244
BfmI CTRYAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 8 cut(s) 26, 29, 32, 53, 78, 428, 685, 957
BlpI GCTNAGC 1 cut(s) 484
BlsI GCNGC 8 cut(s) 27, 30, 33, 54, 79, 429, 686, 958
Bme1390I CCNGG 3 cut(s) 88, 422, 1202
Bme18I GGWCC 3 cut(s) 242, 331, 769
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 5 cut(s) 242, 331, 769, 1003, 1004
BmiI GGNNCC 3 cut(s) 24, 505, 1005
BmrFI CCNGG 3 cut(s) 88, 422, 1202
BmsI GCATC 2 cut(s) 968, 1230
BmtI GCTAGC 1 cut(s) 1025
BpiI GAAGAC 1 cut(s) 409
Bpu1102I GCTNAGC 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 831
BsaI GGTCTC 2 cut(s) 260, 719
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 276, 395, 608, 778
Bse21I CCTNAGG 1 cut(s) 261
BseBI CCWGG 2 cut(s) 88, 1202
BseCI ATCGAT 1 cut(s) 831
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 5 cut(s) 217, 276, 395, 608, 778
BseMII CTCAG 5 cut(s) 252, 363, 441, 498, 1024
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 1007
BseX3I CGGCCG 1 cut(s) 1235
BseXI GCAGC 3 cut(s) 414, 696, 943
BseYI CCCAGC 1 cut(s) 1226
BsgI GTGCAG 1 cut(s) 611
Bsh1285I CGRYCG 1 cut(s) 1238
BshFI GGCC 2 cut(s) 1005, 1237
BshVI ATCGAT 1 cut(s) 831
BsiEI CGRYCG 1 cut(s) 1238
BsiHKAI GWGCWC 2 cut(s) 45, 1200
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 5 cut(s) 217, 276, 395, 608, 778
BsmAI GTCTC 2 cut(s) 260, 719
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 2 cut(s) 286, 1119
BsnI GGCC 2 cut(s) 1005, 1237
Bso31I GGTCTC 2 cut(s) 260, 719
BsoBI CYCGRG 1 cut(s) 716
Bsp120I GGGCCC 1 cut(s) 1003
Bsp1286I GDGCHC 3 cut(s) 45, 1007, 1200
Bsp143I GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
Bsp1720I GCTNAGC 1 cut(s) 484
BspACI CCGC 8 cut(s) 26, 29, 32, 50, 53, 68, 78, 292
BspANI GGCC 2 cut(s) 1005, 1237
BspCNI CTCAG 5 cut(s) 253, 362, 442, 497, 1023
BspDI ATCGAT 1 cut(s) 831
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 24, 505, 1005
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 575
BspOI GCTAGC 1 cut(s) 1025
BspPI GGATC 4 cut(s) 308, 347, 914, 1157
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 2 cut(s) 260, 719
BsrBI CCGCTC 2 cut(s) 55, 80
BssMI GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
Bst2UI CCWGG 2 cut(s) 88, 1202
Bst4CI ACNGT 2 cut(s) 511, 1112
Bst6I CTCTTC 2 cut(s) 62, 341
BstC8I GCNNGC 7 cut(s) 82, 129, 296, 969, 1023, 1147, 1224
BstDEI CTNAG 6 cut(s) 261, 349, 450, 484, 924, 1010
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 7 cut(s) 189, 253, 316, 355, 922, 1087, 1165
BstMAI GTCTC 2 cut(s) 260, 719
BstMBI GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
BstMCI CGRYCG 1 cut(s) 1238
BstMWI GCNNNNNNNGC 5 cut(s) 31, 40, 49, 598, 1011
BstNI CCWGG 2 cut(s) 88, 1202
BstNSI RCATGY 2 cut(s) 378, 764
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 3 cut(s) 86, 420, 1200
BstSFI CTRYAG 1 cut(s) 582
BstSLI GKGCMC 1 cut(s) 1007
BstV1I GCAGC 3 cut(s) 414, 696, 943
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 352, 919
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 2 cut(s) 352, 919
BstZI CGGCCG 1 cut(s) 1235
Bsu15I ATCGAT 1 cut(s) 831
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 2 cut(s) 1005, 1237
BsuTUI ATCGAT 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 1002
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 741
BtsIMutI CAGTG 1 cut(s) 741
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 7 cut(s) 82, 129, 296, 969, 1023, 1147, 1224
CciI TCATGA 1 cut(s) 310
Cfr13I GGNCC 5 cut(s) 242, 331, 769, 1003, 1004
ClaI ATCGAT 1 cut(s) 831
Csp6I GTAC 2 cut(s) 914, 1280
CviAII CATG 7 cut(s) 190, 215, 311, 375, 514, 761, 1041
CviQI GTAC 2 cut(s) 914, 1280
DdeI CTNAG 6 cut(s) 261, 349, 450, 484, 924, 1010
DpnI GATC 7 cut(s) 188, 252, 315, 354, 921, 1086, 1164
DpnII GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
DraI TTTAAA 1 cut(s) 1036
EaeI YGGCCR 1 cut(s) 1235
EagI CGGCCG 1 cut(s) 1235
Eam1104I CTCTTC 2 cut(s) 62, 341
EarI CTCTTC 2 cut(s) 62, 341
EciI GGCGGA 1 cut(s) 57
EclXI CGGCCG 1 cut(s) 1235
Eco24I GRGCYC 1 cut(s) 1007
Eco31I GGTCTC 2 cut(s) 260, 719
Eco47I GGWCC 3 cut(s) 242, 331, 769
Eco52I CGGCCG 1 cut(s) 1235
Eco57I CTGAAG 1 cut(s) 1010
Eco81I CCTNAGG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 716
Eco91I GGTNACC 1 cut(s) 559
EcoO109I RGGNCCY 1 cut(s) 1004
EcoO65I GGTNACC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 86, 1200
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 1007
FaeI CATG 7 cut(s) 193, 218, 314, 378, 517, 764, 1044
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 1 cut(s) 32
FatI CATG 7 cut(s) 189, 214, 310, 374, 513, 760, 1040
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 2 cut(s) 186, 250
Fnu4HI GCNGC 8 cut(s) 26, 29, 32, 53, 78, 428, 685, 957
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 1007
Fsp4HI GCNGC 8 cut(s) 26, 29, 32, 53, 78, 428, 685, 957
FspBI CTAG 3 cut(s) 726, 1022, 1244
GluI GCNGC 8 cut(s) 26, 29, 32, 53, 78, 428, 685, 957
GsaI CCCAGC 1 cut(s) 1230
HaeIII GGCC 2 cut(s) 1005, 1237
HapII CCGG 1 cut(s) 422
Hin1II CATG 7 cut(s) 193, 218, 314, 378, 517, 764, 1044
HincII GTYRAC 1 cut(s) 1182
HindII GTYRAC 1 cut(s) 1182
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 5 cut(s) 98, 694, 896, 938, 1247
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 571, 793
Hpy166II GTNNAC 4 cut(s) 245, 331, 741, 1182
Hpy188I TCNGA 6 cut(s) 352, 357, 451, 889, 1082, 1139
Hpy188III TCNNGA 4 cut(s) 149, 311, 716, 726
Hpy8I GTNNAC 4 cut(s) 245, 331, 741, 1182
HpyAV CCTTC 3 cut(s) 985, 1062, 1202
HpyCH4III ACNGT 2 cut(s) 511, 1112
HpyCH4V TGCA 6 cut(s) 230, 284, 364, 584, 592, 959
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 40, 49, 598, 1011
HpyF3I CTNAG 6 cut(s) 261, 349, 450, 484, 924, 1010
Hsp92II CATG 7 cut(s) 193, 218, 314, 378, 517, 764, 1044
Ksp22I TGATCA 2 cut(s) 186, 250
Kzo9I GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 4 cut(s) 22, 404, 503, 1195
Lsp1109I GCAGC 3 cut(s) 414, 696, 943
LweI GCATC 2 cut(s) 968, 1230
MaeI CTAG 3 cut(s) 726, 1022, 1244
MaeIII GTNAC 1 cut(s) 559
MalI GATC 7 cut(s) 188, 252, 315, 354, 921, 1086, 1164
MbiI CCGCTC 2 cut(s) 55, 80
MboI GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
MboII GAAGA 4 cut(s) 49, 328, 409, 809
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 352, 919
MhlI GDGCHC 3 cut(s) 45, 1007, 1200
MlyI GAGTC 3 cut(s) 107, 703, 1256
MmeI TCCRAC 1 cut(s) 75
Mph1103I ATGCAT 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 2 cut(s) 641, 1035
MslI CAYNNNNRTG 3 cut(s) 89, 326, 512
MspA1I CMGCKG 2 cut(s) 294, 1076
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 88, 422, 1202
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 2 cut(s) 286, 1119
MvaI CCWGG 2 cut(s) 88, 1202
MwoI GCNNNNNNNGC 5 cut(s) 31, 40, 49, 598, 1011
NciI CCSGG 1 cut(s) 422
NdeI CATATG 1 cut(s) 106
NdeII GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
NheI GCTAGC 1 cut(s) 1021
NlaIII CATG 7 cut(s) 193, 218, 314, 378, 517, 764, 1044
NlaIV GGNNCC 3 cut(s) 24, 505, 1005
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 2 cut(s) 378, 764
OliI CACNNNNGTG 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 716
PagI TCATGA 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 575
PciI ACATGT 1 cut(s) 760
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 2 cut(s) 286, 1119
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 2 cut(s) 896, 938
PflMI CCANNNNNTGG 2 cut(s) 395, 608
PkrI GCNGC 8 cut(s) 27, 30, 33, 54, 79, 429, 686, 958
PleI GAGTC 3 cut(s) 106, 702, 1255
PpsI GAGTC 3 cut(s) 106, 702, 1255
PscI ACATGT 1 cut(s) 760
Psp6I CCWGG 2 cut(s) 86, 1200
PspEI GGTNACC 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 1226
PspGI CCWGG 2 cut(s) 86, 1200
PspN4I GGNNCC 3 cut(s) 24, 505, 1005
PspOMI GGGCCC 1 cut(s) 1003
PspPI GGNCC 5 cut(s) 242, 331, 769, 1003, 1004
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 2 cut(s) 352, 919
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 2 cut(s) 915, 1281
RsaNI GTAC 2 cut(s) 914, 1280
RseI CAYNNNNRTG 3 cut(s) 89, 326, 512
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 641, 1035
SatI GCNGC 8 cut(s) 26, 29, 32, 53, 78, 428, 685, 957
Sau3AI GATC 7 cut(s) 186, 250, 313, 352, 919, 1084, 1162
Sau96I GGNCC 5 cut(s) 242, 331, 769, 1003, 1004
SchI GAGTC 3 cut(s) 107, 703, 1256
ScrFI CCNGG 3 cut(s) 88, 422, 1202
SduI GDGCHC 3 cut(s) 45, 1007, 1200
SfaNI GCATC 2 cut(s) 968, 1230
SfcI CTRYAG 1 cut(s) 582
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 3 cut(s) 242, 331, 769
SlaI CTCGAG 1 cut(s) 716
SmiI ATTTAAAT 1 cut(s) 1036
SmiMI CAYNNNNRTG 3 cut(s) 89, 326, 512
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SsiI CCGC 8 cut(s) 26, 29, 32, 50, 53, 68, 78, 292
SspMI CTAG 3 cut(s) 726, 1022, 1244
StyD4I CCNGG 3 cut(s) 86, 420, 1200
SwaI ATTTAAAT 1 cut(s) 1036
TaaI ACNGT 2 cut(s) 511, 1112
TaqI TCGA 5 cut(s) 15, 60, 717, 795, 831
TauI GCSGC 5 cut(s) 28, 31, 34, 55, 80
TfiI GAWTC 2 cut(s) 896, 938
Tru1I TTAA 2 cut(s) 641, 1035
Tru9I TTAA 2 cut(s) 641, 1035
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 3 cut(s) 427, 684, 956
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 2 cut(s) 299, 909
TspRI CASTG 1 cut(s) 748
Van91I CCANNNNNTGG 2 cut(s) 395, 608
VpaK11BI GGWCC 3 cut(s) 242, 331, 769
XapI RAATTY 6 cut(s) 7, 392, 605, 1168, 1267, 1308
XbaI TCTAGA 1 cut(s) 725
XceI RCATGY 2 cut(s) 378, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 3 cut(s) 726, 1022, 1244
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.