FvH4_6g50760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012020
Physical Location & Seq
Forward (+)
37719994 .. 37724477
4484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50760.t1

Sequence Viewer

Length: 1332 bp
ATGGGGAACGTATTGGGGGATTTCTTCGGCAAGCAGCCGCCGCCGCCTATGGTGCTCGTCCCGCCGCTCTTCGATTATCCTCCTCTCGCCGCTCGCACCAGGATGTTGGAGTCGTCATATGACTTGTTGTTTGGGAAGCTTGCTTTGGAAGGTCTGTTTCAGGATTACTTTGAACAAGCAAGGCATTTCAACACAATGATCATGTTAAAGCCGATTGATGACCCTCATGTGGATTTAGTTGCAACGCTCTCTGGTCCGCTTGATCACAAACCTGAGGAGACCATTAATGGGAATGCATTTTTCCGCTGGCAAAGTGATGTTCATGATCCTCACACATTCGTGGACCTCTTCGTATCAAACTCAGATCCGGTTTTGCAGATGAGGGCATGTGCTTACTACCCAAAATATGGATTTGGAGCATTTGGTGTTTTCCCACTGCTGCTCAAACAAAGTAGAATAACATCTGAGGACTTTGGTGTTATGGGATTGAGATACGGGTCAGCAAACTTATCTATTGGAGCCACAGTCATGCCTTTCTCTGTGAAAGATGATTTGCCAAGAAAGGCGTGGTTGGTGATGAAGATGGGTAGTCTAACTGCAGGTGTGCAGTATGAGCCAGAATTTGGGAGCAAAGATGGACAAAAATACAAAGACGTGAAGAATTGGAGTGGTGCAATTGGGTATGGAGTGGGATCAGATAGTCCTTTGAGTCCATCGTTCAATTTTGGTCTCGAGCTTTCGAGAAGTAATCAGTTCATTGCCTCATTCTATCAACATGTGGTGGTCCAAAGACGGGTGAAAAATCCCCTCGAAGAGAATCAAATTGTTGGGATTACGAATTATATCGATTTTGGCTTTGAATTACAATCAAGGCTTGATAGGTTTGATGATACCAAATCATCAGACGATGAATCAAACTCAAACAGAGTACCAGATCCTAAGAATATACCAGATTCCACCTTTCAAGTAGCTGCATCTTGGCAAGCCAATAAGAACTGTTTGCTGAAGGGAAAGGTGGGCCCTCTCAGCTCATCGCTAGCATTCGCATTCAAATCATGGTGGAAACCTTCTTTCACGTTCAGCATTTCAGCTGTCCGAGATCACGTTTTTGGAAATACAGCTTATGGTTTTGGCATTCGTGTTGAGAATATCAGACAAGCCAGCTACGAAAGAGCCGATCCAAATTTTGTAATGTTGACACCAACTAAGGAGCACCTGGCACAAGGTATTGCATGGGAAGCTGGGAAACGACCGATGCTAGAGTCAAATATAAATGCTGGAAACTTTGATGGCGTACCAATGGAATTAAGACCCTTGCGAAAGATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

49.62

Weight (kDa)

6.27

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27930 AT3G27930 AT3G27930
fragaria_vesca FvH4_6g50760
malus_domestica MD09G1032600.v1.1 MD17G1034200.v1.1
prunus_persica Prupe.3G285400_v2.0.a1
pyrus_communis pycom17g03160
rosa_chinensis RchiOBHm_Chr2g0171701
rosa_laevigata RLG00000022030
rosa_multiflora Rmu_ssc0000252.1_g000012
rosa_roxburghii Rroxscaffold_2G00080510
rosa_rugosa Rorug02G0555400
rosa_samantha Rh2BG641000 Rh2BG643500 Rh2CG609200 Rh2DG651900 Rh2DG657200
rosa_wichuraiana Rw2G052180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 590
Acc36I ACCTGC 1 cut(s) 590
AccB7I CCANNNNNTGG 2 cut(s) 407, 623
AccBSI CCGCTC 2 cut(s) 67, 92
AciI CCGC 8 cut(s) 38, 41, 44, 62, 65, 90, 257, 304
AclWI GGATC 5 cut(s) 320, 359, 700, 929, 1172
AcsI RAATTY 2 cut(s) 620, 1183
AcuI CTGAAG 1 cut(s) 1025
AfaI GTAC 2 cut(s) 930, 1296
AfiI CCNNNNNNNGG 5 cut(s) 229, 288, 407, 623, 793
AflIII ACRYGT 1 cut(s) 775
AgsI TTSAA 6 cut(s) 173, 190, 721, 860, 965, 1051
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 2 cut(s) 98, 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 8 cut(s) 139, 736, 971, 1029, 1091, 1121, 1164, 1241
AluI AGCT 8 cut(s) 139, 736, 971, 1029, 1091, 1121, 1164, 1241
Alw21I GWGCWC 2 cut(s) 57, 1215
Alw26I GTCTC 2 cut(s) 272, 734
AlwI GGATC 5 cut(s) 320, 359, 700, 929, 1172
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 1 cut(s) 1018
ApaI GGGCCC 1 cut(s) 1022
ApeKI GCWGC 3 cut(s) 34, 439, 971
ApoI RAATTY 2 cut(s) 620, 1183
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AseI ATTAAT 1 cut(s) 285
AspS9I GGNCC 5 cut(s) 254, 343, 784, 1018, 1019
AsuHPI GGTGA 2 cut(s) 586, 808
AsuNHI GCTAGC 1 cut(s) 1036
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 3 cut(s) 254, 343, 784
AxyI CCTNAGG 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 1022
BanII GRGCYC 1 cut(s) 1022
Bbv12I GWGCWC 2 cut(s) 57, 1215
BbvI GCAGC 3 cut(s) 46, 426, 958
BccI CCATC 4 cut(s) 577, 629, 721, 1283
BciT130I CCWGG 2 cut(s) 100, 1217
BclI TGATCA 2 cut(s) 198, 262
BcoDI GTCTC 2 cut(s) 272, 734
BfaI CTAG 2 cut(s) 1037, 1259
BfmI CTRYAG 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 590
BisI GCNGC 8 cut(s) 35, 38, 41, 44, 65, 90, 440, 972
BlsI GCNGC 8 cut(s) 36, 39, 42, 45, 66, 91, 441, 973
Bme1390I CCNGG 2 cut(s) 100, 1217
Bme18I GGWCC 3 cut(s) 254, 343, 784
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 5 cut(s) 254, 343, 784, 1018, 1019
BmiI GGNNCC 2 cut(s) 520, 1020
BmrFI CCNGG 2 cut(s) 100, 1217
BmsI GCATC 2 cut(s) 983, 1245
BmtI GCTAGC 1 cut(s) 1040
Bsa29I ATCGAT 1 cut(s) 846
BsaI GGTCTC 2 cut(s) 272, 734
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 288, 407, 623, 793
Bse21I CCTNAGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 2 cut(s) 100, 1217
BseCI ATCGAT 1 cut(s) 846
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 5 cut(s) 229, 288, 407, 623, 793
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 4 cut(s) 264, 375, 456, 1039
BseRI GAGGAG 2 cut(s) 72, 290
BseSI GKGCMC 1 cut(s) 1022
BseXI GCAGC 3 cut(s) 46, 426, 958
BseYI CCCAGC 1 cut(s) 1241
BsgI GTGCAG 1 cut(s) 626
Bsh1285I CGRYCG 1 cut(s) 1253
BshFI GGCC 1 cut(s) 1020
BshVI ATCGAT 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 1253
BsiHKAI GWGCWC 2 cut(s) 57, 1215
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 5 cut(s) 229, 288, 407, 623, 793
BsmAI GTCTC 2 cut(s) 272, 734
BsmFI GGGAC 1 cut(s) 44
BsmI GAATGC 4 cut(s) 298, 1040, 1046, 1134
BsnI GGCC 1 cut(s) 1020
Bso31I GGTCTC 2 cut(s) 272, 734
BsoBI CYCGRG 1 cut(s) 731
Bsp120I GGGCCC 1 cut(s) 1018
Bsp1286I GDGCHC 3 cut(s) 57, 1022, 1215
Bsp143I GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
BspACI CCGC 8 cut(s) 38, 41, 44, 62, 65, 90, 257, 304
BspANI GGCC 1 cut(s) 1020
BspCNI CTCAG 4 cut(s) 265, 374, 457, 1038
BspDI ATCGAT 1 cut(s) 846
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 520, 1020
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 590
BspOI GCTAGC 1 cut(s) 1040
BspPI GGATC 5 cut(s) 320, 359, 700, 929, 1172
BspQI GCTCTTC 1 cut(s) 74
BspTNI GGTCTC 2 cut(s) 272, 734
BsrBI CCGCTC 2 cut(s) 67, 92
BsrDI GCAATG 1 cut(s) 756
BssMI GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
Bst2UI CCWGG 2 cut(s) 100, 1217
Bst4CI ACNGT 2 cut(s) 526, 998
Bst6I CTCTTC 3 cut(s) 74, 353, 807
BstC8I GCNNGC 7 cut(s) 32, 94, 141, 308, 984, 1038, 1162
BstDEI CTNAG 6 cut(s) 273, 361, 465, 939, 1025, 1206
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 8 cut(s) 201, 265, 328, 367, 695, 937, 1102, 1180
BstMAI GTCTC 2 cut(s) 272, 734
BstMBI GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
BstMCI CGRYCG 1 cut(s) 1253
BstMWI GCNNNNNNNGC 7 cut(s) 40, 43, 52, 61, 613, 1026, 1238
BstNI CCWGG 2 cut(s) 100, 1217
BstNSI RCATGY 2 cut(s) 390, 779
BstSCI CCNGG 2 cut(s) 98, 1215
BstSFI CTRYAG 1 cut(s) 597
BstSLI GKGCMC 1 cut(s) 1022
BstV1I GCAGC 3 cut(s) 46, 426, 958
BstX2I RGATCY 2 cut(s) 364, 934
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 2 cut(s) 364, 934
Bsu15I ATCGAT 1 cut(s) 846
Bsu36I CCTNAGG 1 cut(s) 273
BsuRI GGCC 1 cut(s) 1020
BsuTUI ATCGAT 1 cut(s) 846
BtgZI GCGATG 1 cut(s) 1017
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 7 cut(s) 32, 94, 141, 308, 984, 1038, 1162
CciI TCATGA 1 cut(s) 322
Cfr13I GGNCC 5 cut(s) 254, 343, 784, 1018, 1019
ClaI ATCGAT 1 cut(s) 846
Csp6I GTAC 2 cut(s) 929, 1295
CviAII CATG 8 cut(s) 202, 227, 323, 387, 529, 776, 1056, 1233
CviQI GTAC 2 cut(s) 929, 1295
DdeI CTNAG 6 cut(s) 273, 361, 465, 939, 1025, 1206
DpnI GATC 8 cut(s) 200, 264, 327, 366, 694, 936, 1101, 1179
DpnII GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
Eam1104I CTCTTC 3 cut(s) 74, 353, 807
EarI CTCTTC 3 cut(s) 74, 353, 807
Eco24I GRGCYC 1 cut(s) 1022
Eco31I GGTCTC 2 cut(s) 272, 734
Eco47I GGWCC 3 cut(s) 254, 343, 784
Eco57I CTGAAG 1 cut(s) 1025
Eco81I CCTNAGG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 731
EcoO109I RGGNCCY 1 cut(s) 1019
EcoRII CCWGG 2 cut(s) 98, 1215
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 1022
FaeI CATG 8 cut(s) 205, 230, 326, 390, 532, 779, 1059, 1236
FaqI GGGAC 1 cut(s) 44
FatI CATG 8 cut(s) 201, 226, 322, 386, 528, 775, 1055, 1232
FauI CCCGC 1 cut(s) 69
FauNDI CATATG 1 cut(s) 118
FbaI TGATCA 2 cut(s) 198, 262
Fnu4HI GCNGC 8 cut(s) 35, 38, 41, 44, 65, 90, 440, 972
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 1022
Fsp4HI GCNGC 8 cut(s) 35, 38, 41, 44, 65, 90, 440, 972
FspBI CTAG 2 cut(s) 1037, 1259
GluI GCNGC 8 cut(s) 35, 38, 41, 44, 65, 90, 440, 972
GsaI CCCAGC 1 cut(s) 1245
HaeIII GGCC 1 cut(s) 1020
HapII CCGG 1 cut(s) 368
Hin1II CATG 8 cut(s) 205, 230, 326, 390, 532, 779, 1059, 1236
HincII GTYRAC 1 cut(s) 1197
HindII GTYRAC 1 cut(s) 1197
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 7 cut(s) 110, 709, 817, 911, 953, 1262, 1324
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 586, 808
Hpy166II GTNNAC 2 cut(s) 343, 1197
Hpy188I TCNGA 6 cut(s) 364, 466, 697, 904, 1097, 1154
Hpy188III TCNNGA 4 cut(s) 161, 323, 731, 741
Hpy8I GTNNAC 2 cut(s) 343, 1197
HpyAV CCTTC 3 cut(s) 143, 1000, 1077
HpyCH4III ACNGT 2 cut(s) 526, 998
HpyCH4IV ACGT 4 cut(s) 9, 654, 1076, 1104
HpyCH4V TGCA 8 cut(s) 242, 296, 376, 599, 607, 674, 974, 1232
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 43, 52, 61, 613, 1026, 1238
HpyF3I CTNAG 6 cut(s) 273, 361, 465, 939, 1025, 1206
HpySE526I ACGT 4 cut(s) 9, 654, 1076, 1104
Hsp92II CATG 8 cut(s) 205, 230, 326, 390, 532, 779, 1059, 1236
Ksp22I TGATCA 2 cut(s) 198, 262
Kzo9I GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 4 cut(s) 416, 518, 627, 1210
Lsp1109I GCAGC 3 cut(s) 46, 426, 958
LweI GCATC 2 cut(s) 983, 1245
MaeI CTAG 2 cut(s) 1037, 1259
MaeII ACGT 4 cut(s) 9, 654, 1076, 1104
MalI GATC 8 cut(s) 200, 264, 327, 366, 694, 936, 1101, 1179
MbiI CCGCTC 2 cut(s) 67, 92
MboI GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
MboII GAAGA 6 cut(s) 16, 61, 340, 592, 670, 824
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 364, 934
MhlI GDGCHC 3 cut(s) 57, 1022, 1215
MluCI AATT 9 cut(s) 620, 661, 675, 721, 822, 838, 860, 1183, 1304
MlyI GAGTC 3 cut(s) 119, 718, 1271
MmeI TCCRAC 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 3 cut(s) 206, 285, 1307
MslI CAYNNNNRTG 3 cut(s) 101, 338, 527
MspA1I CMGCKG 2 cut(s) 306, 1091
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 100, 1217
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 4 cut(s) 298, 1040, 1046, 1134
MvaI CCWGG 2 cut(s) 100, 1217
MwoI GCNNNNNNNGC 7 cut(s) 40, 43, 52, 61, 613, 1026, 1238
NdeI CATATG 1 cut(s) 118
NdeII GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
NheI GCTAGC 1 cut(s) 1036
NlaIII CATG 8 cut(s) 205, 230, 326, 390, 532, 779, 1059, 1236
NlaIV GGNNCC 2 cut(s) 520, 1020
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 2 cut(s) 390, 779
OliI CACNNNNGTG 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 731
PagI TCATGA 1 cut(s) 322
PaqCI CACCTGC 1 cut(s) 590
PciI ACATGT 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 1173
PctI GAATGC 4 cut(s) 298, 1040, 1046, 1134
PfeI GAWTC 4 cut(s) 817, 911, 953, 1324
PflMI CCANNNNNTGG 2 cut(s) 407, 623
PkrI GCNGC 8 cut(s) 36, 39, 42, 45, 66, 91, 441, 973
PleI GAGTC 3 cut(s) 118, 717, 1270
PpsI GAGTC 3 cut(s) 118, 717, 1270
PscI ACATGT 1 cut(s) 775
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 98, 1215
PspFI CCCAGC 1 cut(s) 1241
PspGI CCWGG 2 cut(s) 98, 1215
PspN4I GGNNCC 2 cut(s) 520, 1020
PspOMI GGGCCC 1 cut(s) 1018
PspPI GGNCC 5 cut(s) 254, 343, 784, 1018, 1019
PstI CTGCAG 1 cut(s) 601
PsuI RGATCY 2 cut(s) 364, 934
PvuII CAGCTG 1 cut(s) 1091
RsaI GTAC 2 cut(s) 930, 1296
RsaNI GTAC 2 cut(s) 929, 1295
RseI CAYNNNNRTG 3 cut(s) 101, 338, 527
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 3 cut(s) 206, 285, 1307
SatI GCNGC 8 cut(s) 35, 38, 41, 44, 65, 90, 440, 972
Sau3AI GATC 8 cut(s) 198, 262, 325, 364, 692, 934, 1099, 1177
Sau96I GGNCC 5 cut(s) 254, 343, 784, 1018, 1019
SchI GAGTC 3 cut(s) 119, 718, 1271
ScrFI CCNGG 2 cut(s) 100, 1217
SduI GDGCHC 3 cut(s) 57, 1022, 1215
SfaNI GCATC 2 cut(s) 983, 1245
SfcI CTRYAG 1 cut(s) 597
Sfr274I CTCGAG 1 cut(s) 731
SinI GGWCC 3 cut(s) 254, 343, 784
SlaI CTCGAG 1 cut(s) 731
SmiMI CAYNNNNRTG 3 cut(s) 101, 338, 527
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 9 cut(s) 620, 661, 675, 721, 822, 838, 860, 1183, 1304
SsiI CCGC 8 cut(s) 38, 41, 44, 62, 65, 90, 257, 304
SspMI CTAG 2 cut(s) 1037, 1259
StyD4I CCNGG 2 cut(s) 98, 1215
TaaI ACNGT 2 cut(s) 526, 998
TaiI ACGT 4 cut(s) 12, 657, 1079, 1107
TaqI TCGA 5 cut(s) 72, 732, 740, 810, 846
TaqII GACCGA 1 cut(s) 1267
TasI AATT 9 cut(s) 620, 661, 675, 721, 822, 838, 860, 1183, 1304
TauI GCSGC 5 cut(s) 40, 43, 46, 67, 92
TfiI GAWTC 4 cut(s) 817, 911, 953, 1324
Tru1I TTAA 3 cut(s) 206, 285, 1307
Tru9I TTAA 3 cut(s) 206, 285, 1307
TscAI CASTG 1 cut(s) 441
TseI GCWGC 3 cut(s) 34, 439, 971
TspDTI ATGAA 4 cut(s) 311, 593, 745, 924
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 2 cut(s) 407, 623
VpaK11BI GGWCC 3 cut(s) 254, 343, 784
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 2 cut(s) 620, 1183
XceI RCATGY 2 cut(s) 390, 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XhoI CTCGAG 1 cut(s) 731
XspI CTAG 2 cut(s) 1037, 1259
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.