Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015023

Physical Location & Seq

Genomic Coordinates Reverse (-)

10588947 .. 10590685

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGATGTCTGGTTCAAGATTAGCCTCTAGACTAATAATAATCTTCTCAATAATCTCCACATCTTTCTTCACCGTTGAATCGATTCGACTATTCCCTGATTCATTCGACGATGCATCTTCAGATTTAATGGAAGCTCCAGCATATCAAAACGGTCTTGATTGCTCTGTTTTAGCCAAAAACAGACTCTTGTTAGCTTGTGATCCATCAGCTGTTCATATAGCTATGACTCTAGATCCAGCTTACTTGCGTGGCACGGTATCTGCAGTACATTCCATCCTCAAACACACTTCTTGCCCTGAAAACATCTTCTTCCACTTCATTGCTTCGGGTACAAGTCAGGGTTCCCTCGCCAAGACCCTATCCTCTGTTTTTCCTTCTTTGAGTTTCAAAGTCTATACCTTTGAAGAAACCACGGTCAAGAATCTAATCTCTTCTTCTATAAGACAAGCTCTTGATAGTCCTTTGAATTACGCAAGAAGCTACTTATCCGAGATTCTTTCTTCGTGTGTTAGTCGAGTGATTTATCTCGATTCGGATGTGATTGTGGTCGATGATATTCAGAAACTATGGAAGATTTCTTTATCCGGGTCAAGAACAATCGGTGCACCAGAGTATTGCCACGCAAATTTCACCAAATACTTCACAGATAGTTTCTGGTCCGATCAAAAACTCTCGAGTGTCTTCGATTCCAAGACTCCTTGTTATTTCAACACAGGAGTGATGGTTATCGATTTAGAGCGATGGAGAGAAGGAGATTACACGAGAAAGATCGAAAACTGGATGAAGATTCAGAAAGAAGATAAGAGAATCTACGAATTGGGTTCTTTACCACCGTTTCTTCTAGTGTTTGGTGGTGATATTGAAGCTATTGATCATCAATGGAACCAACACGGTCTCGGTGGAGACAACATTGTGAGTAGTTGTAGATCTTTGCATCCTGGTCCGGTTAGTTTGATACATTGGAGTGGTAAAGGGAAGCCATGGGTTAGGCTTGATGATGGTAAGCCTTGTCCAATTGATTATCTTTGGGCTCCTTATGATCTTCACAAGTCACAGAGGCAGTATCTTCAATACAATCAAGAGTTAGAAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0050896 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

365

Amino Acids

41.18

Weight (kDa)

5.93

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	72 - 330	6.4e-54	Glycosyl transferase family 8
Glyco_transf_24	PF18404	157 - 257	1.4e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28340
fragaria_vesca	FvH4_6g49810
malus_domestica	MD17G1042500.v1.1
prunus_persica	Prupe.3G276500_v2.0.a1
pyrus_communis	pycom111g03210 pycom17g03810
rosa_chinensis	RchiOBHm_Chr2g0169951
rosa_laevigata	RLG00000021913
rosa_multiflora	Rmu_co8421609.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081720
rosa_rugosa	Rorug02G0544600
rosa_samantha	Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana	Rw2G051080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	194, 227
AcsI	RAATTY	2 cut(s)	625, 1089
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	2 cut(s)	267, 331
AgsI	TTSAA	8 cut(s)	15, 77, 388, 404, 466, 709, 863, 1070
AjnI	CCWGG	1 cut(s)	937
AleI	CACNNNNGTG	1 cut(s)	716
AluBI	AGCT	8 cut(s)	134, 194, 209, 221, 239, 449, 480, 866
AluI	AGCT	8 cut(s)	134, 194, 209, 221, 239, 449, 480, 866
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	2 cut(s)	897, 899
Alw44I	GTGCAC	1 cut(s)	603
AlwI	GGATC	2 cut(s)	194, 227
Ama87I	CYCGRG	1 cut(s)	673
ApaLI	GTGCAC	1 cut(s)	603
ApoI	RAATTY	2 cut(s)	625, 1089
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	657, 941
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	3 cut(s)	61, 622, 866
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	2 cut(s)	657, 941
BaeGI	GKGCMC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	1033
BauI	CACGAG	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	607
BccI	CCATC	5 cut(s)	211, 281, 715, 735, 992
BciT130I	CCWGG	1 cut(s)	939
BclI	TGATCA	1 cut(s)	871
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	897, 899
BfaI	CTAG	3 cut(s)	27, 230, 842
BfmI	CTRYAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	926
Bme1390I	CCNGG	2 cut(s)	586, 939
Bme18I	GGWCC	2 cut(s)	657, 941
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	2 cut(s)	657, 941
BmiI	GGNNCC	3 cut(s)	343, 884, 1032
BmrFI	CCNGG	2 cut(s)	586, 939
BmsI	GCATC	3 cut(s)	100, 122, 943
BpiI	GAAGAC	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	586
Bsa29I	ATCGAT	2 cut(s)	80, 729
BsaBI	GATNNNNATC	1 cut(s)	725
BsaI	GGTCTC	1 cut(s)	899
BsaJI	CCNNGG	2 cut(s)	411, 980
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bse1I	ACTGG	1 cut(s)	782
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	939
BseCI	ATCGAT	2 cut(s)	80, 729
BseDI	CCNNGG	2 cut(s)	411, 980
BseGI	GGATG	4 cut(s)	273, 541, 786, 934
BseJI	GATNNNNATC	1 cut(s)	725
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	607
BshVI	ATCGAT	2 cut(s)	80, 729
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	2 cut(s)	585, 944
BsmAI	GTCTC	2 cut(s)	897, 899
Bso31I	GGTCTC	1 cut(s)	899
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	2 cut(s)	607, 1033
Bsp143I	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
Bsp19I	CCATGG	1 cut(s)	980
BspDI	ATCGAT	2 cut(s)	80, 729
BspLI	GGNNCC	3 cut(s)	343, 884, 1032
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	2 cut(s)	194, 227
BspTNI	GGTCTC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	782
BssECI	CCNNGG	2 cut(s)	411, 980
BssMI	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
BssSI	CACGAG	1 cut(s)	760
BssT1I	CCWWGG	1 cut(s)	980
Bst2BI	CACGAG	1 cut(s)	760
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	6 cut(s)	73, 152, 256, 415, 834, 893
Bst6I	CTCTTC	1 cut(s)	436
BstDSI	CCRYGG	2 cut(s)	411, 980
BstF5I	GGATG	4 cut(s)	273, 541, 786, 934
BstKTI	GATC	7 cut(s)	202, 235, 664, 771, 874, 929, 1042
BstMAI	GTCTC	2 cut(s)	897, 899
BstMBI	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
BstNI	CCWGG	1 cut(s)	939
BstSCI	CCNGG	2 cut(s)	584, 937
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	607
BstV2I	GAAGAC	1 cut(s)	673
BstX2I	RGATCY	2 cut(s)	232, 926
BstYI	RGATCY	2 cut(s)	232, 926
Bsu15I	ATCGAT	2 cut(s)	80, 729
BsuTUI	ATCGAT	2 cut(s)	80, 729
BtgI	CCRYGG	2 cut(s)	411, 980
BtgZI	GCGATG	1 cut(s)	754
BtsCI	GGATG	4 cut(s)	273, 541, 786, 934
Cfr13I	GGNCC	2 cut(s)	657, 941
ClaI	ATCGAT	2 cut(s)	80, 729
Csp6I	GTAC	2 cut(s)	266, 330
CviAII	CATG	1 cut(s)	981
CviQI	GTAC	2 cut(s)	266, 330
DpnI	GATC	7 cut(s)	201, 234, 663, 770, 873, 928, 1041
DpnII	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	980
Eco24I	GRGCYC	1 cut(s)	1033
Eco31I	GGTCTC	1 cut(s)	899
Eco47I	GGWCC	2 cut(s)	657, 941
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	673
EcoRII	CCWGG	1 cut(s)	937
EcoT14I	CCWWGG	1 cut(s)	980
EcoT22I	ATGCAT	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	1033
ErhI	CCWWGG	1 cut(s)	980
FaeI	CATG	1 cut(s)	984
FaiI	YATR	9 cut(s)	142, 216, 218, 224, 396, 440, 568, 982, 1038
FatI	CATG	1 cut(s)	980
FbaI	TGATCA	1 cut(s)	871
FokI	GGATG	4 cut(s)	260, 548, 793, 921
FriOI	GRGCYC	1 cut(s)	1033
FspBI	CTAG	3 cut(s)	27, 230, 842
GsuI	CTGGAG	1 cut(s)	120
HapII	CCGG	2 cut(s)	585, 944
Hin1II	CATG	1 cut(s)	984
HpaII	CCGG	2 cut(s)	585, 944
HphI	GGTGA	3 cut(s)	61, 622, 866
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	6 cut(s)	121, 490, 535, 561, 661, 792
Hpy8I	GTNNAC	1 cut(s)	605
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	384, 743
HpyCH4III	ACNGT	6 cut(s)	73, 152, 256, 415, 834, 893
HpyCH4V	TGCA	4 cut(s)	113, 263, 605, 934
Hsp92II	CATG	1 cut(s)	984
Ksp22I	TGATCA	1 cut(s)	871
Kzo9I	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
LmnI	GCTCC	2 cut(s)	139, 1036
LweI	GCATC	3 cut(s)	100, 122, 943
MaeI	CTAG	3 cut(s)	27, 230, 842
MaeIII	GTNAC	1 cut(s)	1050
MalI	GATC	7 cut(s)	201, 234, 663, 770, 873, 928, 1041
MboI	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	2 cut(s)	232, 926
MhlI	GDGCHC	2 cut(s)	607, 1033
MluCI	AATT	5 cut(s)	466, 625, 815, 1014, 1089
MlyI	GAGTC	3 cut(s)	177, 220, 688
MnlI	CCTC	5 cut(s)	34, 287, 356, 373, 1050
Mph1103I	ATGCAT	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	2 cut(s)	716, 963
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	2 cut(s)	585, 944
MspR9I	CCNGG	2 cut(s)	586, 939
MunI	CAATTG	1 cut(s)	1014
MvaI	CCWGG	1 cut(s)	939
NciI	CCSGG	1 cut(s)	586
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
NlaIII	CATG	1 cut(s)	984
NlaIV	GGNNCC	3 cut(s)	343, 884, 1032
NmuCI	GTSAC	1 cut(s)	1050
NsiI	ATGCAT	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	716
PaeR7I	CTCGAG	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	9 cut(s)	77, 82, 98, 421, 493, 530, 686, 787, 807
PleI	GAGTC	3 cut(s)	177, 220, 688
PpsI	GAGTC	3 cut(s)	177, 220, 688
Psp6I	CCWGG	1 cut(s)	937
PspGI	CCWGG	1 cut(s)	937
PspN4I	GGNNCC	3 cut(s)	343, 884, 1032
PspPI	GGNCC	2 cut(s)	657, 941
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	232, 926
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	267, 331
RsaNI	GTAC	2 cut(s)	266, 330
RseI	CAYNNNNRTG	2 cut(s)	716, 963
SaqAI	TTAA	1 cut(s)	125
Sau3AI	GATC	7 cut(s)	199, 232, 661, 768, 871, 926, 1039
Sau96I	GGNCC	2 cut(s)	657, 941
SchI	GAGTC	3 cut(s)	177, 220, 688
ScrFI	CCNGG	2 cut(s)	586, 939
SduI	GDGCHC	2 cut(s)	607, 1033
SetI	ASST	9 cut(s)	136, 196, 211, 223, 241, 401, 451, 482, 868
SfaNI	GCATC	3 cut(s)	100, 122, 943
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	673
SinI	GGWCC	2 cut(s)	657, 941
SlaI	CTCGAG	1 cut(s)	673
SmiMI	CAYNNNNRTG	2 cut(s)	716, 963
SmlI	CTYRAG	1 cut(s)	673
SmoI	CTYRAG	1 cut(s)	673
Sse9I	AATT	5 cut(s)	466, 625, 815, 1014, 1089
SspMI	CTAG	3 cut(s)	27, 230, 842
StyD4I	CCNGG	2 cut(s)	584, 937
StyI	CCWWGG	1 cut(s)	980
TaaI	ACNGT	6 cut(s)	73, 152, 256, 415, 834, 893
TasI	AATT	5 cut(s)	466, 625, 815, 1014, 1089
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	9 cut(s)	77, 82, 98, 421, 493, 530, 686, 787, 807
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	1050
Tsp45I	GTSAC	1 cut(s)	1050
TspDTI	ATGAA	4 cut(s)	90, 203, 307, 797
VneI	GTGCAC	1 cut(s)	603
VpaK11BI	GGWCC	2 cut(s)	657, 941
XapI	RAATTY	2 cut(s)	625, 1089
XbaI	TCTAGA	2 cut(s)	26, 229
XhoI	CTCGAG	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	3 cut(s)	27, 230, 842
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.